VHD838
Library VH
(Link to library)
Clone ID VHD838
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11159-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VHD838 (VHD838Q) /CSM/VH/VHD8-B/VHD838Q.Seq.d/
ATTATTTTATTTTATAAGCTTTGAAGAAAATGAGAGAATTTTTAAAAGATGATTATGATG
TAATAGTTTGTGGTGGTGGTCCAGTTGGTTTGGCTACTGCATACAGATGTGCCAAAGCTG
GAAAGAAAGTACTTTGTCTCGAAAAATCAGTATTCTTTAATGGAGGTGGTAGTAGTGGTG
ATGTTGTTAGAATGTTACGTACAATGTACACTGAAGATTATATGGCCGATTTAGCACATG
AAACCCTTGGACTCTGGAAAGAACTTGGTGATGATGCTGGTGAAGGTGATTTAGTTTGGA
TGACAGGTCTCCTAAATTTTGGTGATCCAAATTATGGTGCAGGTGGTCCAGAAGGTACTT
TATTAGGACCAATTCCAAATTTAGAGAGATTGGGTATGCAATACAAAGTGTTAACTGCTC
AAGAAATTATGGAAGAGTATCCATTTAGAAACATTCCATCCAATCACCAAGGTGTTTTTG
CTCCAGACAATGGTGTTATCAATTTACCATTGGTATTACGTTCTCTTTACAAGTTATGTT
TACAATATGGTTGTAAAATGGTAAGCCAXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence
yfil*ALKKMREFLKDDYDVIVCGGGPVGLATAYRCAKAGKKVLCLEKSVFFNGGGSSGD
VVRMLRTMYTEDYMADLAHETLGLWKELGDDAGEGDLVWMTGLLNFGDPNYGAGGPEGTL
LGPIPNLERLGMQYKVLTAQEIMEEYPFRNIPSNHQGVFAPDNGVINLPLVLRSLYKLCL
QYGCKMVS---


Translated Amino Acid sequence (All Frames)
Frame A:
iilfykl*rk*enf*kmimm**fvvvvqlvwllhtdvpklerkyfvsknqyslmevvvvv
mllecyvqctlkiiwpi*hmkpldsgknlvmmlvkvi*fg*qvs*ilviqimvqvvqkvl
y*dqfqi*rdwvcntkc*llkklwksihletfhpitkvfllqtmvlsiyhwyyvlftsyv
ynmvvkw*a---


Frame B:
lfyfisfeenerifkr*l*cnslwwwsswfgyciqmcqswkestlsrkisil*wrw**w*
cc*nvtynvh*rlygrfst*npwtlertw**cw*r*fslddrspkfw*sklwcrwsrryf
irtnskfreigyaiqsvncsrnygrvsi*khsiqsprcfcsrqwcyqftigitfslqvmf
tiwl*ngk---


Frame C:
yfil*ALKKMREFLKDDYDVIVCGGGPVGLATAYRCAKAGKKVLCLEKSVFFNGGGSSGD
VVRMLRTMYTEDYMADLAHETLGLWKELGDDAGEGDLVWMTGLLNFGDPNYGAGGPEGTL
LGPIPNLERLGMQYKVLTAQEIMEEYPFRNIPSNHQGVFAPDNGVINLPLVLRSLYKLCL
QYGCKMVS---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHQ418 (VHQ418Q) /CSM/VH/VHQ4-A/VHQ418Q.Seq.d/ 1126 0.0
VHL890 (VHL890Q) /CSM/VH/VHL8-D/VHL890Q.Seq.d/ 1126 0.0
VHK762 (VHK762Q) /CSM/VH/VHK7-C/VHK762Q.Seq.d/ 1126 0.0
VHK414 (VHK414Q) /CSM/VH/VHK4-A/VHK414Q.Seq.d/ 1126 0.0
VHI858 (VHI858Q) /CSM/VH/VHI8-C/VHI858Q.Seq.d/ 1126 0.0
VHD838 (VHD838Q) /CSM/VH/VHD8-B/VHD838Q.Seq.d/ 1126 0.0
VHB454 (VHB454Q) /CSM/VH/VHB4-C/VHB454Q.Seq.d/ 1126 0.0
VHB252 (VHB252Q) /CSM/VH/VHB2-C/VHB252Q.Seq.d/ 1126 0.0
VHA135 (VHA135Q) /CSM/VH/VHA1-B/VHA135Q.Seq.d/ 1126 0.0
SHL131 (SHL131Q) /CSM/SH/SHL1-B/SHL131Q.Seq.d/ 1126 0.0

own update 2003.10.16
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC009598|AC009598.3 Homo sapiens chromosome 8 clone RP11-223O12 map 8, WORKING DRAFTSEQUENCE, 9 unordered pieces. 40 0.009 4
CQ344998|CQ344998.1 Sequence 19092 from Patent WO0157275. 38 0.12 2
CQ308193|CQ308193.1 Sequence 19298 from Patent WO0186003. 38 0.12 2
CQ270885|CQ270885.1 Sequence 19146 from Patent WO0157277. 38 0.12 2
CQ232880|CQ232880.1 Sequence 19719 from Patent WO0157273. 38 0.12 2
CQ184373|CQ184373.1 Sequence 15769 from Patent WO0157274. 38 0.12 2
CQ149594|CQ149594.1 Sequence 19616 from Patent WO0157276. 38 0.12 2
CQ110849|CQ110849.1 Sequence 19708 from Patent WO0157272. 38 0.12 2
EJ261209|EJ261209.1 1095349040450 Global-Ocean-Sampling_GS-27-01-01-1P8-2P0KB marine metagenome genomic clone 1061005495618 3', genomic survey sequence. 48 0.28 1
EJ150489|EJ150489.1 1092343756363 Global-Ocean-Sampling_GS-27-01-01-1P8-2P0KB marine metagenome genomic clone 1061001453166 5', genomic survey sequence. 48 0.28 1
dna update 2007. 6.26
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CU638744_413(CU638744|pid:none) Podospora anserina genomic DNA c... 204 2e-51
Y18574_4(Y18574|pid:none) Streptomyces tendae strain Tue901, nik... 109 5e-23
AM286415_1545(AM286415|pid:none) Yersinia enterocolitica subsp. ... 80 5e-14
CP001291_5186(CP001291|pid:none) Cyanothece sp. PCC 7424, comple... 78 2e-13
(Q29RU9) RecName: Full=Peroxisomal sarcosine oxidase; S... 77 3e-13
AY892312_1(AY892312|pid:none) Synthetic construct Homo sapiens c... 76 6e-13
CR457155_1(CR457155|pid:none) Homo sapiens full open reading fra... 76 6e-13
AF134593_1(AF134593|pid:none) Homo sapiens L-pipecolic acid oxid... 76 6e-13
AX882278_1(AX882278|pid:none) Sequence 17183 from Patent EP10746... 76 6e-13
BC114006_1(BC114006|pid:none) Bos taurus L-pipecolic acid oxidas... 76 7e-13
protein update 2009. 6.29
PSORT

psg: 0.67 gvh: 0.49 alm: 0.40 top: 0.53 tms: 0.00 mit: 0.26 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
40.0 %: nuclear
4.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for VHD838 is cyt

5' end seq. ID VHD838F
5' end seq.
>VHD838F.Seq
ATTATTTTATTTTATAAGCTTTGAAGAAAATGAGAGAATTTTTAAAAGATGATTATGATG
TAATAGTTTGTGGTGGTGGTCCAGTTGGTTTGGCTACTGCATACAGATGTGCCAAAGCTG
GAAAGAAAGTACTTTGTCTCGAAAAATCAGTATTCTTTAATGGAGGTGGTAGTAGTGGTG
ATGTTGTTAGAATGTTACGTACAATGTACACTGAAGATTATATGGCCGATTTAGCACATG
AAACCCTTGGACTCTGGAAAGAACTTGGTGATGATGCTGGTGAAGGTGATTTAGTTTGGA
TGACAGGTCTCCTAAATTTTGGTGATCCAAATTATGGTGCAGGTGGTCCAGAAGGTACTT
TATTAGGACCAATTCCAAATTTAGAGAGATTGGGTATGCAATACAAAGTGTTAACTGCTC
AAGAAATTATGGAAGAGTATCCATTTAGAAACATTCCATCCAATCACCAAGGTGTTTTTG
CTCCAGACAATGGTGTTATCAATTTACCATTGGTATTACGTTCTCTTTACAAGTTATGTT
TACAATATGGTTGTAAAATGGTAAGCCANNNNNNNNNN
Length of 5' end seq. 578
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -