VHD812
Library VH
(Link to library)
Clone ID VHD812
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16507-1
Original site URL
Representative seq. ID VHD812P
(Link to Original site)
Representative DNA sequence
>VHD812 (VHD812Q) /CSM/VH/VHD8-A/VHD812Q.Seq.d/
AAAAATGGTAATAAAAAAATTATTTATATTAATTTTTTGTTTGTTTTTAATTATCAATGA
AATTAATGGAAAAAAAACAAAAATAAATGATATTAAAAAATCAAAACCAAAACTATCATC
AACATTATTAAATGTTCATATTGNTGCTCATACTCATGANGATGTTGGTTGGTTAAAAAC
AGTTGATGAATATTATTATGGATCAAATATGTCAATTGCATTTGCAGGNGTTCAATATAC
TTTGGATACAGCCCTTACCTGTTTATTGGCAAATCCANAAAGAAAGTTTATTTATGTTGA
AATTGCATTTTTCCAAAGATGGNGGGATGAACAAAGTACAACAATGCAAAATATTGTTAA
NGGTTTGGTTGAAAGTGGTCAATTGGAATTCATAAATGGTGGGTATTGTATGAATXXXXX
XXXXXCGTCCATCATGGAATTTACCCGTGGTTCAACCAACCAGTGGTAATTATGTACCTG
TGAATGCTATTGCATACATTCAAGATCNTAATCAATCATTACAATTCACCATTGTCANTG
ATAGAAGTCGTGGATGTGCATCGTTAAGAGATGGTCAATTGGATATGATGATGCATCGTC
GTACTTTGGAAGATGATGGTCGTGGTGTTGGTCAACCAATGAATGAGTCAACTCAAATCG
TTACAACTAGTAAATTGATTTTCCATGATATTTCAAGTTATGCTCAATCTCATTATCGTC
CTGCTGCACTCTCTNNATCACATCCATTACTCCCAATGTTTACAACCACTCAACAATCTT
CAAACGATTGGAATTCTCAATATCAAGGTGTTTACTCACCATTGACTTCAGCCTCACCTT
TACCAAATGGTTTAAAGATTCAAACTCTACAATGGTTAGATAATCAAGATAATACCATAC
TTTTACGTATTGAAAATATTTATCAAATTGATGGTCAAGATTCACAAGATCCACAAGGGT
ATCACTTTAGATCTTTCAACTATCTTTTCAACAATTACAATCACTTNGTGCAANTGAAAT
GAATTTAACTGGTGTTCAAAAATTATCAAAATTTATCAAGATTAAAATGGAAAACTGTTG
ATGGTAAAAACTATGATCATAAATCATCATCATCAACTAAAGAAGAATAAAACAAAANNA
AAANAAAAAACAATTTTCACACAAGTA
sequence update 2002.10.25
Translated Amino Acid sequence
KMVIKKLFILIFCLFLIINEINGKKTKINDIKKSKPKLSSTLLNVHIXAHTHXDVGWLKT
VDEYYYGSNMSIAFAGVQYTLDTALTCLLANPXRKFIYVEIAFFQRWXDEQSTTMQNIVX
GLVESGQLEFINGGYCMN---

---RPSWNLPVVQPTSGNYVPVNAIAYIQDXNQSLQFTIVXDRSRGCASLRDGQLDMMMH
RRTLEDDGRGVGQPMNESTQIVTTSKLIFHDISSYAQSHYRPAALSXSHPLLPMFTTTQQ
SSNDWNSQYQGVYSPLTSASPLPNGLKIQTLQWLDNQDNTILLRIENIYQIDGQDSQDPQ
GYHFRSFNYLFNNYNHXVQXK*i*lvfknyqnlsrlkwktvdgknydhksssstkee*nk
xkxknnfhts


Translated Amino Acid sequence (All Frames)
Frame A:
kngnkkiiyinflfvfnyq*n*wkknknk*y*kiktktiiniikcsyxcsys*xcwlvkn
s**illwikyvncicrxsiyfgyspylfigksxkkvylc*ncifpkmxg*tkynnakyc*
xfg*kwsigihkwwvlye---

---RPSWNLPVVQPTSGNYVPVNAIAYIQDXNQSLQFTIVXDRSRGCASLRDGQLDMMMH
RRTLEDDGRGVGQPMNESTQIVTTSKLIFHDISSYAQSHYRPAALSXSHPLLPMFTTTQQ
SSNDWNSQYQGVYSPLTSASPLPNGLKIQTLQWLDNQDNTILLRIENIYQIDGQDSQDPQ
GYHFRSFNYLFNNYNHXVQXK*i*lvfknyqnlsrlkwktvdgknydhksssstkee*nk
xkxknnfhts

Frame B:
KMVIKKLFILIFCLFLIINEINGKKTKINDIKKSKPKLSSTLLNVHIXAHTHXDVGWLKT
VDEYYYGSNMSIAFAGVQYTLDTALTCLLANPXRKFIYVEIAFFQRWXDEQSTTMQNIVX
GLVESGQLEFINGGYCMN---

---vhhgiypwfnqpvvimyl*mllhtfkixinhynsplsxievvdvhr*emvnwi**ci
vvlwkmmvvvlvnq*msqlkslqlvn*fsmifqvmlnliivllhslxhihysqclqplnn
lqtigilnikvfthh*lqphlyqmv*rfklyng*iikiipyfyvlkifiklmvkihkihk
gitldlstifstititxcx*nefnwcskiikiyqd*ngkllmvktmiinhhhqlkknktk
xkxktiftqv

Frame C:
kw**knyly*ffvcf*lsmklmekkqk*milknqnqnyhqhy*mfilxlilmxmlvg*kq
lmniimdqicqlhlqxfnilwiqplpvywqixkeslfmlklhfskdggmnkvqqckillx
vwlkvvnwns*mvgiv*---

---simeftrgstnqw*lctcecycihsrs*siitihhcx**kswmcivkrwsigyddas
syfgr*wswcwstne*vnsnryn**idfp*yfklcsislsscctlxitsitpnvynhsti
fkrlefsisrclltidfsltftkwfkdsnstmvr*sr*yhtfty*kylsn*wsrftrstr
vsl*ifqlsfqqlqslxaxemnltgvqklskfikikmenc*w*kl*s*iiiin*rrikqx
xxkkqfshk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHD812 (VHD812Q) /CSM/VH/VHD8-A/VHD812Q.Seq.d/ 1883 0.0
AHF160 (AHF160Q) /CSM/AH/AHF1-C/AHF160Q.Seq.d/ 1275 0.0
VHP767 (VHP767Q) /CSM/VH/VHP7-C/VHP767Q.Seq.d/ 1269 0.0
VHQ167 (VHQ167Q) /CSM/VH/VHQ1-C/VHQ167Q.Seq.d/ 1267 0.0
VHP443 (VHP443Q) /CSM/VH/VHP4-B/VHP443Q.Seq.d/ 1267 0.0
VHP436 (VHP436Q) /CSM/VH/VHP4-B/VHP436Q.Seq.d/ 1267 0.0
VHO880 (VHO880Q) /CSM/VH/VHO8-D/VHO880Q.Seq.d/ 1267 0.0
VHO643 (VHO643Q) /CSM/VH/VHO6-B/VHO643Q.Seq.d/ 1267 0.0
VHM790 (VHM790Q) /CSM/VH/VHM7-D/VHM790Q.Seq.d/ 1267 0.0
VHK686 (VHK686Q) /CSM/VH/VHK6-D/VHK686Q.Seq.d/ 1267 0.0

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

M82822|M82822.1 Dictyostelium discoideum alpha-mannosidase (manA) gene, complete cds. 1005 0.0 4
CK149800|CK149800.1 CsmgEST00336 Culicoides sonorensis female serum-fed midgut cDNA Library Culicoides sonorensis cDNA, mRNA sequence. 105 4e-19 2
CV682907|CV682907.1 service43_H06_sjs2-16-2B11-T3 SJS Schistosoma japonicum cDNA, mRNA sequence. 68 2e-10 2
CV688215|CV688215.1 sjs2-16-2_G01_sjs2-16-2G01-T3 SJS Schistosoma japonicum cDNA, mRNA sequence. 68 3e-10 2
CV682854|CV682854.1 service30_G09_sjs2-14-10C09-T3 SJS Schistosoma japonicum cDNA, mRNA sequence. 68 3e-10 2
BU798369|BU798369.1 SJF2ADB01 SJF Schistosoma japonicum cDNA, mRNA sequence. 68 3e-10 2
BU798139|BU798139.1 SJF2AAF09 SJF Schistosoma japonicum cDNA, mRNA sequence. 68 3e-10 2
BU804021|BU804021.1 SJFBFG06 SJF Schistosoma japonicum cDNA, mRNA sequence. 68 3e-10 2
CI772524|CI772524.1 Oryza sativa (japonica cultivar-group) cDNA, clone: J10B0068A21T3, 5'end of J100068A21. 76 3e-09 1
CI767734|CI767734.1 Oryza sativa (japonica cultivar-group) cDNA, clone: J10B0051A04T3, 5'end of J100051A04. 76 3e-09 1
dna update 2007. 6.26
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P34098) RecName: Full=Lysosomal alpha-mannosidase; Sho... 376 e-103
M82822_1(M82822|pid:none) Dictyostelium discoideum alpha-mannosi... 373 e-102
AK291572_1(AK291572|pid:none) Homo sapiens cDNA FLJ76867 complet... 125 4e-27
U05572_1(U05572|pid:none) Human lysosomal alpha-mannosidase (MAN... 125 4e-27
AB209921_1(AB209921|pid:none) Homo sapiens mRNA for mannosidase,... 125 4e-27
(Q29451) RecName: Full=Lysosomal alpha-mannosidase; Sho... 124 5e-27
JC2200(JC2200)alpha-mannosidase (EC 3.2.1.24) precursor - human 123 1e-26
AY036155_1(AY036155|pid:none) Cavia porcellus lysosomal alpha-ma... 122 2e-26
(Q8VHC8) RecName: Full=Lysosomal alpha-mannosidase; Sho... 122 2e-26
AY099704_1(AY099704|pid:none) Arabidopsis thaliana alpha-mannosi... 122 2e-26
protein update 2009. 6.29
PSORT

psg: 1.01 gvh: 0.62 alm: 0.17 top: 0.47 tms: 0.07 mit: 0.37 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

28.0 %: endoplasmic reticulum
16.0 %: cytoplasmic
16.0 %: mitochondrial
16.0 %: nuclear
12.0 %: Golgi
4.0 %: plasma membrane
4.0 %: vesicles of secretory system
4.0 %: extracellular, including cell wall

>> prediction for VHD812 is end

5' end seq. ID VHD812F
5' end seq.
>VHD812F.Seq
AAAAATGGTAATAAAAAAATTATTTATATTAATTTTTTGTTTGTTTTTAATTATCAATGA
AATTAATGGAAAAAAAACAAAAATAAATGATATTAAAAAATCAAAACCAAAACTATCATC
AACATTATTAAATGTTCATATTGNTGCTCATACTCATGANGATGTTGGTTGGTTAAAAAC
AGTTGATGAATATTATTATGGATCAAATATGTCAATTGCATTTGCAGGNGTTCAATATAC
TTTGGATACAGCCCTTACCTGTTTATTGGCAAATCCANAAAGAAAGTTTATTTATGTTGA
AATTGCATTTTTCCAAAGATGGNGGGATGAACAAAGTACAACAATGCAAAATATTGTTAA
NGGTTTGGTTGAAAGTGGTCAATTGGAATTCATAAATGGTGGGTATTGTATGAATNNNNN
NNNNN
Length of 5' end seq. 425
3' end seq. ID VHD812Z
3' end seq.
>VHD812Z.Seq
NNNNNNNNNNCGTCCATCATGGAATTTACCCGTGGTTCAACCAACCAGTGGTAATTATGT
ACCTGTGAATGCTATTGCATACATTCAAGATCNTAATCAATCATTACAATTCACCATTGT
CANTGATAGAAGTCGTGGATGTGCATCGTTAAGAGATGGTCAATTGGATATGATGATGCA
TCGTCGTACTTTGGAAGATGATGGTCGTGGTGTTGGTCAACCAATGAATGAGTCAACTCA
AATCGTTACAACTAGTAAATTGATTTTCCATGATATTTCAAGTTATGCTCAATCTCATTA
TCGTCCTGCTGCACTCTCTNNATCACATCCATTACTCCCAATGTTTACAACCACTCAACA
ATCTTCAAACGATTGGAATTCTCAATATCAAGGTGTTTACTCACCATTGACTTCAGCCTC
ACCTTTACCAAATGGTTTAAAGATTCAAACTCTACAATGGTTAGATAATCAAGATAATAC
CATACTTTTACGTATTGAAAATATTTATCAAATTGATGGTCAAGATTCACAAGATCCACA
AGGGTATCACTTTAGATCTTTCAACTATCTTTTCAACAATTACAATCACTTNGTGCAANT
GAAATGAATTTAACTGGTGTTCAAAAATTATCAAAATTTATCAAGATTAAAATGGAAAAC
TGTTGATGGTAAAAACTATGATCATAAATCATCATCATCAACTAAAGAAGAATAAAACAA
AANNAAAANAAAAAACAATTTTCACACAAGTA
Length of 3' end seq. 752
Connected seq. ID VHD812P
Connected seq.
>VHD812P.Seq
AAAAATGGTAATAAAAAAATTATTTATATTAATTTTTTGTTTGTTTTTAATTATCAATGA
AATTAATGGAAAAAAAACAAAAATAAATGATATTAAAAAATCAAAACCAAAACTATCATC
AACATTATTAAATGTTCATATTGNTGCTCATACTCATGANGATGTTGGTTGGTTAAAAAC
AGTTGATGAATATTATTATGGATCAAATATGTCAATTGCATTTGCAGGNGTTCAATATAC
TTTGGATACAGCCCTTACCTGTTTATTGGCAAATCCANAAAGAAAGTTTATTTATGTTGA
AATTGCATTTTTCCAAAGATGGNGGGATGAACAAAGTACAACAATGCAAAATATTGTTAA
NGGTTTGGTTGAAAGTGGTCAATTGGAATTCATAAATGGTGGGTATTGTATGAAT-----
-----CGTCCATCATGGAATTTACCCGTGGTTCAACCAACCAGTGGTAATTATGTACCTG
TGAATGCTATTGCATACATTCAAGATCNTAATCAATCATTACAATTCACCATTGTCANTG
ATAGAAGTCGTGGATGTGCATCGTTAAGAGATGGTCAATTGGATATGATGATGCATCGTC
GTACTTTGGAAGATGATGGTCGTGGTGTTGGTCAACCAATGAATGAGTCAACTCAAATCG
TTACAACTAGTAAATTGATTTTCCATGATATTTCAAGTTATGCTCAATCTCATTATCGTC
CTGCTGCACTCTCTNNATCACATCCATTACTCCCAATGTTTACAACCACTCAACAATCTT
CAAACGATTGGAATTCTCAATATCAAGGTGTTTACTCACCATTGACTTCAGCCTCACCTT
TACCAAATGGTTTAAAGATTCAAACTCTACAATGGTTAGATAATCAAGATAATACCATAC
TTTTACGTATTGAAAATATTTATCAAATTGATGGTCAAGATTCACAAGATCCACAAGGGT
ATCACTTTAGATCTTTCAACTATCTTTTCAACAATTACAATCACTTNGTGCAANTGAAAT
GAATTTAACTGGTGTTCAAAAATTATCAAAATTTATCAAGATTAAAATGGAAAACTGTTG
ATGGTAAAAACTATGATCATAAATCATCATCATCAACTAAAGAAGAATAAAACAAAANNA
AAANAAAAAACAATTTTCACACAAGTA
Length of connected seq. 1157
Full length Seq ID -
Full length Seq. -
Length of full length seq. -