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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHD773
Library VH
(Link to library)
Clone ID VHD773
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10794-1
Original site URL
Representative seq. ID VHD773P
(Link to Original site)
Representative DNA sequence 
>VHD773 (VHD773Q) /CSM/VH/VHD7-D/VHD773Q.Seq.d/
GTCATATCAATAATAAATATTATTACATATACAAAACAAAATTAATAAAACTTAAACTTT
ATTTTTCCCCTACATTGGCCAAACTTTAATTTGCCTTTGTACAATTATTCTCTTTAAACT
CTTATTATTAAAATTCATTTTAAAAACTCTCATTTCTAAAAAAACTAAAACAAAAAAAAA
TGGTCAATTTTACAATAGATCAAATTCGTTCAATTATGGATCGTCGTGAAAATATCAGAA
ATATGTCTGTTATTGCTCATGTTGATCATGGTAAAACTACTCTTACTGATTCATTAATTC
AAAGAGCTGGTATTATTGCANATAAGGTATCTGGTAATGCAGGATATATGTCATGTCGTC
CANATGAACAATTACGTGGTATTACCATAAAGTCATCATCTGTTTCACTTCACTTTGAAA
TGCCAAAAGXXXXXXXXXXGATAAGAATGATGCAGTTAACATTTGGTCATTTGGTCCAGA
ATATAAGGGTCCAAATGTTTTAGTTAACAAAACCAAAGGTGTTCAATATCTTCATGAAAT
TAAAGACTCTATGGTTTCAGCATTCCAATGGATCTCAAATGAAGGTGTATTATGTGGTGA
GAAAATGAGATCGATTCGTTTCAACGTTTATGATGTAATGCTTCATGCCGATGCAATTCA
TAGAGGTAGTGGTCAATTTATTCCAACAACTCGTCGTGTAATGTATGCCTCCCAACTATC
AGCTCAACCAACACTTTTGGAACCAATGTATTTGGTTGATATTAGTACTCCTGAAAGTGG
TATTAGTGGTATCTACTCTGTACTCAATCGTAGAAGAGGTGTTGTCATTGGTGAAGAACG
TCGTATTGGTACTCCATTATTCAATATCAAAGCTTATCTTCCTGTAATGGAATCATTTGG
TCTCACTGCTGATTTACGTTCAAGTACTGCTGGTCAAGCTTTCCCTCAATGTGTTTTTGA
TCATTGGAGTTCAATTGGTATCGTTGGTCAAGATAAAAGATCAACTGAAGTAGCTTCATC
AATTAGAAAGAGGAAAGGTTTAAATCCAAAATTACCAACTCTNAAGAATATAANAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
hinnkyyyiyktkliklklyfsptlakl*fafvqlfslnsyy*nsf*KLSFLKKLKQKKM
VNFTIDQIRSIMDRRENIRNMSVIAHVDHGKTTLTDSLIQRAGIIAXKVSGNAGYMSCRP
XEQLRGITIKSSSVSLHFEMPK---

---DKNDAVNIWSFGPEYKGPNVLVNKTKGVQYLHEIKDSMVSAFQWISNEGVLCGEKMR
SIRFNVYDVMLHADAIHRGSGQFIPTTRRVMYASQLSAQPTLLEPMYLVDISTPESGISG
IYSVLNRRRGVVIGEERRIGTPLFNIKAYLPVMESFGLTADLRSSTAGQAFPQCVFDHWS
SIGIVGQDKRSTEVASSIRKRKGLNPKLPTLKNIXK
Translated Amino Acid sequence (All Frames) 
Frame A:
visiiniitytkqn**nlnfifplhwpnfnlplynysl*tliikihfknshf*kn*nkkk
wsilq*ikfvqlwivvkiseicllllmlimvkllllih*fkelvllxirylvmqdichvv
xmnnyvvlp*shhlfhftlkcqk---

---DKNDAVNIWSFGPEYKGPNVLVNKTKGVQYLHEIKDSMVSAFQWISNEGVLCGEKMR
SIRFNVYDVMLHADAIHRGSGQFIPTTRRVMYASQLSAQPTLLEPMYLVDISTPESGISG
IYSVLNRRRGVVIGEERRIGTPLFNIKAYLPVMESFGLTADLRSSTAGQAFPQCVFDHWS
SIGIVGQDKRSTEVASSIRKRKGLNPKLPTLKNIXK

Frame B:
syq**illhiqnkinkt*tlffpyigqtliclctiilfkllllkfilktliskktktkkn
gqfynrsnsfnygss*kyqkyvcycsc*sw*nysy*finskswyycx*giw*criyvmss
x*titwyyhkviicftsl*nak---

---irmmqltfghlvqnirvqmf*ltkpkvfnifmklktlwfqhsngsqmkvyyvvrk*d
rfvstfmm*cfmpmqfievvvnlfqqlvv*cmppnyqlnqhfwnqciwlilvllkvvlvv
stlysiveevlslvknvvlvlhysisklifl*wnhlvslliyvqvllvklslnvfliigv
qlvslvkikdqlk*lhqlergkv*iqnyqlxri*xk

Frame C:
hinnkyyyiyktkliklklyfsptlakl*fafvqlfslnsyy*nsf*KLSFLKKLKQKKM
VNFTIDQIRSIMDRRENIRNMSVIAHVDHGKTTLTDSLIQRAGIIAXKVSGNAGYMSCRP
XEQLRGITIKSSSVSLHFEMPK---

---*e*cs*hlviwsri*gskcfs*qnqrcsiss*n*rlygfsipmdlk*rcimw*enei
dsfqrl*cnascrcns*r*wsiysnnsscnvclptisstntfgtnvfg*y*ys*kwy*wy
llctqs*krcchw*rtsywysiiqyqslsscngiiwshc*ftfkycwssfpsmcf*slef
nwyrwsr*kin*ssfin*keerfkskitnsxeyxk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHD773 (VHD773Q) /CSM/VH/VHD7-D/VHD773Q.Seq.d/                       1699   0.0
VHG843 (VHG843Q) /CSM/VH/VHG8-B/VHG843Q.Seq.d/                       1235   0.0
VHC477 (VHC477Q) /CSM/VH/VHC4-D/VHC477Q.Seq.d/                       1235   0.0
VHJ535 (VHJ535Q) /CSM/VH/VHJ5-B/VHJ535Q.Seq.d/                       1233   0.0
AHM404 (AHM404Q) /CSM/AH/AHM4-A/AHM404Q.Seq.d/                       1227   0.0
VHK348 (VHK348Q) /CSM/VH/VHK3-B/VHK348Q.Seq.d/                       1225   0.0
SHG365 (SHG365Q) /CSM/SH/SHG3-C/SHG365Q.Seq.d/                       1225   0.0
VHN741 (VHN741Q) /CSM/VH/VHN7-B/VHN741Q.Seq.d/                       1223   0.0
VHJ186 (VHJ186Q) /CSM/VH/VHJ1-D/VHJ186Q.Seq.d/                       1223   0.0
VHD358 (VHD358Q) /CSM/VH/VHD3-C/VHD358Q.Seq.d/                       1223   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M26017|M26017.1 D.discoideum elongation factor 2 mRNA, complete cds.   159   2e-91  8
BI863585|BI863585.1 kx46a06.y1 Parastrongyloides trichosuri FL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to SW:EF2_CAEEL P29691 ELONGATION FACTOR 2 ;, mRNA sequence.    66   2e-21  4
BI863575|BI863575.1 kx45h07.y1 Parastrongyloides trichosuri FL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to SW:EF2_CHICK Q90705 ELONGATION FACTOR 2 ;, mRNA sequence.    66   4e-18  3
BI451383|BI451383.1 kx23e09.y1 Parastrongyloides trichosuri FL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to SW:EF2_CAEEL P29691 ELONGATION FACTOR 2 ;, mRNA sequence.    66   4e-18  3
BM056853|BM056853.1 2154-85 hindgut and Malpighian tubule subtracted cDNA library Ctenocephalides felis cDNA clone 2154-85, mRNA sequence.    92   4e-14  1
DR447725|DR447725.1 AR1047E10 A. gomesiana hemocytes normalized library Acanthoscurria gomesiana cDNA clone AR1047E10 5', mRNA sequence.    88   7e-14  2
DR443579|DR443579.1 AR2018A03 A. gomesiana hemocytes library Acanthoscurria gomesiana cDNA clone AR2018A03 5', mRNA sequence.    88   7e-14  2
BM058578|BM058578.1 2193-94 hindgut and Malpighian tubule subtracted cDNA library Ctenocephalides felis cDNA clone 2193-94, mRNA sequence.    90   2e-13  1
BM058379|BM058379.1 2191-29 hindgut and Malpighian tubule subtracted cDNA library Ctenocephalides felis cDNA clone 2191-29, mRNA sequence.    90   2e-13  1
DR446795|DR446795.1 AR1036E10 A. gomesiana hemocytes normalized library Acanthoscurria gomesiana cDNA clone AR1036E10 5', mRNA sequence.    84   1e-12  2
dna update 2007. 6.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069933_1(AY069933|pid:none) Rana sylvatica eukaryotic translat...   248   3e-64
BT072304_1(BT072304|pid:none) Salmo salar clone ssal-rgf-520-280...   246   8e-64
BC089730_1(BC089730|pid:none) Xenopus tropicalis MGC108369 prote...   246   1e-63
BT071866_1(BT071866|pid:none) Salmo salar clone ssal-rgf-501-088...   246   1e-63
BT059038_1(BT059038|pid:none) Salmo salar clone ssal-rgf-521-328...   246   1e-63
BT045031_1(BT045031|pid:none) Salmo salar clone ssal-rgf-510-120...   245   2e-63
BC060707_1(BC060707|pid:none) Mus musculus eukaryotic translatio...   244   4e-63
AK161993_1(AK161993|pid:none) Mus musculus 12 days embryo male w...   244   4e-63
AK298498_1(AK298498|pid:none) Homo sapiens cDNA FLJ56548 complet...   244   4e-63
AK032997_1(AK032997|pid:none) Mus musculus 12 days embryo male w...   244   4e-63
protein update 2009. 6.29
PSORT 

 psg: 0.66  gvh: 0.43  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.34  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 32.0 %: nuclear
	 20.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: peroxisomal

>> prediction for VHD773 is cyt
5' end seq. ID VHD773F
5' end seq. 
>VHD773F.Seq
GTCATATCAATAATAAATATTATTACATATACAAAACAAAATTAATAAAACTTAAACTTT
ATTTTTCCCCTACATTGGCCAAACTTTAATTTGCCTTTGTACAATTATTCTCTTTAAACT
CTTATTATTAAAATTCATTTTAAAAACTCTCATTTCTAAAAAAACTAAAACAAAAAAAAA
TGGTCAATTTTACAATAGATCAAATTCGTTCAATTATGGATCGTCGTGAAAATATCAGAA
ATATGTCTGTTATTGCTCATGTTGATCATGGTAAAACTACTCTTACTGATTCATTAATTC
AAAGAGCTGGTATTATTGCANATAAGGTATCTGGTAATGCAGGATATATGTCATGTCGTC
CANATGAACAATTACGTGGTATTACCATAAAGTCATCATCTGTTTCACTTCACTTTGAAA
TGCCAAAAGNNNNNNNNNN
Length of 5' end seq. 439
3' end seq. ID VHD773Z
3' end seq. 
>VHD773Z.Seq
NNNNNNNNNNGATAAGAATGATGCAGTTAACATTTGGTCATTTGGTCCAGAATATAAGGG
TCCAAATGTTTTAGTTAACAAAACCAAAGGTGTTCAATATCTTCATGAAATTAAAGACTC
TATGGTTTCAGCATTCCAATGGATCTCAAATGAAGGTGTATTATGTGGTGAGAAAATGAG
ATCGATTCGTTTCAACGTTTATGATGTAATGCTTCATGCCGATGCAATTCATAGAGGTAG
TGGTCAATTTATTCCAACAACTCGTCGTGTAATGTATGCCTCCCAACTATCAGCTCAACC
AACACTTTTGGAACCAATGTATTTGGTTGATATTAGTACTCCTGAAAGTGGTATTAGTGG
TATCTACTCTGTACTCAATCGTAGAAGAGGTGTTGTCATTGGTGAAGAACGTCGTATTGG
TACTCCATTATTCAATATCAAAGCTTATCTTCCTGTAATGGAATCATTTGGTCTCACTGC
TGATTTACGTTCAAGTACTGCTGGTCAAGCTTTCCCTCAATGTGTTTTTGATCATTGGAG
TTCAATTGGTATCGTTGGTCAAGATAAAAGATCAACTGAAGTAGCTTCATCAATTAGAAA
GAGGAAAGGTTTAAATCCAAAATTACCAACTCTNAAGAATATAANAAAAA
Length of 3' end seq. 650
Connected seq. ID VHD773P
Connected seq. 
>VHD773P.Seq
GTCATATCAATAATAAATATTATTACATATACAAAACAAAATTAATAAAACTTAAACTTT
ATTTTTCCCCTACATTGGCCAAACTTTAATTTGCCTTTGTACAATTATTCTCTTTAAACT
CTTATTATTAAAATTCATTTTAAAAACTCTCATTTCTAAAAAAACTAAAACAAAAAAAAA
TGGTCAATTTTACAATAGATCAAATTCGTTCAATTATGGATCGTCGTGAAAATATCAGAA
ATATGTCTGTTATTGCTCATGTTGATCATGGTAAAACTACTCTTACTGATTCATTAATTC
AAAGAGCTGGTATTATTGCANATAAGGTATCTGGTAATGCAGGATATATGTCATGTCGTC
CANATGAACAATTACGTGGTATTACCATAAAGTCATCATCTGTTTCACTTCACTTTGAAA
TGCCAAAAG----------GATAAGAATGATGCAGTTAACATTTGGTCATTTGGTCCAGA
ATATAAGGGTCCAAATGTTTTAGTTAACAAAACCAAAGGTGTTCAATATCTTCATGAAAT
TAAAGACTCTATGGTTTCAGCATTCCAATGGATCTCAAATGAAGGTGTATTATGTGGTGA
GAAAATGAGATCGATTCGTTTCAACGTTTATGATGTAATGCTTCATGCCGATGCAATTCA
TAGAGGTAGTGGTCAATTTATTCCAACAACTCGTCGTGTAATGTATGCCTCCCAACTATC
AGCTCAACCAACACTTTTGGAACCAATGTATTTGGTTGATATTAGTACTCCTGAAAGTGG
TATTAGTGGTATCTACTCTGTACTCAATCGTAGAAGAGGTGTTGTCATTGGTGAAGAACG
TCGTATTGGTACTCCATTATTCAATATCAAAGCTTATCTTCCTGTAATGGAATCATTTGG
TCTCACTGCTGATTTACGTTCAAGTACTGCTGGTCAAGCTTTCCCTCAATGTGTTTTTGA
TCATTGGAGTTCAATTGGTATCGTTGGTCAAGATAAAAGATCAACTGAAGTAGCTTCATC
AATTAGAAAGAGGAAAGGTTTAAATCCAAAATTACCAACTCTNAAGAATATAANAAAAA
Length of connected seq. 1069
Full length Seq ID -
Full length Seq. -
Length of full length seq. -