>VHD771 (VHD771Q) /CSM/VH/VHD7-C/VHD771Q.Seq.d/
AATCAAATAATAGTTCTTATAATGCTAAAGATGATGATGATGATGAACCAGGTTCAAGTG
GTAATGATATTCAAAAGATTTTAGGTAAAGAAAGATTAGGTCGTATTCTTTCATCATTGT
ATATGATGAGATTTGATAATAATTCATCAGTTCGTCAAAAGGTATTATTAATTTGGAAAT
ATATTGTTAGTAATACACCAAAGACACTTCGTGAGATTTTACCAACTCTTATTGAAATGA
TTATTAGTTCCATTGGTTCAAATAATGTTGAAAAGAGACAAATTTCCGCTAAAACTTTGG
GTGATATTGTTAGTAAACTTAGTGATCGTATTTTACCAGAGATTTTACCAATTCTTGAAC
GTGGTCTTAGATCAGAACTCGAAGAAACTAGACAAGGTGTTTGTATTGGTCTTAGTGAAG
TTATTTCCTCTGCAAAGACTCAATTACTTCCATACCTTTCAAGTGTTGTAACTTGTATCA
CCAAAGCATTATGTGATCCACTCATTGATGTTAGAGAGGCAGCCCGCTAAAGCTTTCGAT
CATCTCTATCATACXXXXXXXXXX

SNNSSYNAKDDDDDEPGSSGNDIQKILGKERLGRILSSLYMMRFDNNSSVRQKVLLIWKY
IVSNTPKTLREILPTLIEMIISSIGSNNVEKRQISAKTLGDIVSKLSDRILPEILPILER
GLRSELEETRQGVCIGLSEVISSAKTQLLPYLSSVVTCITKALCDPLIDVREAAR*sfrs
sls---

Frame A:
nqiivlimlkmmmmmnqvqvvmifkrf*vkkd*vvffhhci**dliiihqfvkryy*fgn
illvihqrhfvrfyqlllk*llvplvqimlkrdkfplklwvillvnlvivfyqrfyqfln
vvldqnskkldkvfvlvlvklfplqrlnyfhtfqvl*lvspkhyvihslmlerqpakafd
hlyh---


Frame B:
ik**fl*c*r*****trfkw**yskdfr*rkirsysfiivydei***fissskgiinlei
yc**ytkdts*dftnsy*ndy*fhwfk*c*ketnfr*nfg*yc**t**syftrdftns*t
ws*irtrrn*trclyws**syflckdsitsipfkccnlyhqsim*sth*c*rgsplklsi
isii---


Frame C:
SNNSSYNAKDDDDDEPGSSGNDIQKILGKERLGRILSSLYMMRFDNNSSVRQKVLLIWKY
IVSNTPKTLREILPTLIEMIISSIGSNNVEKRQISAKTLGDIVSKLSDRILPEILPILER
GLRSELEETRQGVCIGLSEVISSAKTQLLPYLSSVVTCITKALCDPLIDVREAAR*sfrs
sls---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHD771 (VHD771Q) /CSM/VH/VHD7-C/VHD771Q.Seq.d/                       1007   0.0
VHF215 (VHF215Q) /CSM/VH/VHF2-A/VHF215Q.Seq.d/                        942   0.0
VHA755 (VHA755Q) /CSM/VH/VHA7-C/VHA755Q.Seq.d/                        720   0.0
VHK689 (VHK689Q) /CSM/VH/VHK6-D/VHK689Q.Seq.d/                        626   e-179
VHO589 (VHO589Q) /CSM/VH/VHO5-D/VHO589Q.Seq.d/                        394   e-109
VHC675 (VHC675Q) /CSM/VH/VHC6-D/VHC675Q.Seq.d/                        333   2e-90
VHA441 (VHA441Q) /CSM/VH/VHA4-B/VHA441Q.Seq.d/                        305   4e-82
VHB245 (VHB245Q) /CSM/VH/VHB2-B/VHB245Q.Seq.d/                        266   3e-70
VHL277 (VHL277Q) /CSM/VH/VHL2-D/VHL277Q.Seq.d/                        196   3e-49
CHJ427 (CHJ427Q) /CSM/CH/CHJ4-B/CHJ427Q.Seq.d/                         42   0.009

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

ED460729|ED460729.1 AUAC-aao05g05.g1 Ascaris suum whole genome shotgun library (PMAJ_4GSS) Ascaris suum genomic, genomic survey sequence.    50   0.069  1
ED450392|ED450392.1 AUAC-aan56c12.g1 Ascaris suum whole genome shotgun library (PMAJ_4 GSS) Ascaris suum genomic, genomic survey sequence.    50   0.069  1
ED393242|ED393242.1 AUAC-aai25f10.g1 Ascaris suum whole genome shotgun library (PMAJ_4 GSS) Ascaris suum genomic, genomic survey sequence.    50   0.069  1
ED186094|ED186094.1 AUAC-aah66a04.g1 Ascaris suum whole genome shotgun library (PMAJ_4 GSS) Ascaris suum genomic, genomic survey sequence.    50   0.069  1
CI555036|CI555036.1 Oryza sativa (japonica cultivar-group) cDNA, clone: J10B0063H17M3, 3'end of J100063H17.    36   1.1    2
DV445909|DV445909.1 CV01017A2F05.f1 CV01-normalized library Manihot esculenta cDNA clone CV01017A2F05.f1, mRNA sequence.    46   1.1    1
DN316509|DN316509.1 PL06023B2H02 cDNA from juvenile hermaphodites Schmidtea mediterranea cDNA 5', mRNA sequence.    46   1.1    1
DN316491|DN316491.1 PL06023B2F07 cDNA from juvenile hermaphodites Schmidtea mediterranea cDNA 5', mRNA sequence.    46   1.1    1
DN316412|DN316412.1 PL06023B1G09 cDNA from juvenile hermaphodites Schmidtea mediterranea cDNA 5', mRNA sequence.    46   1.1    1
DN315518|DN315518.1 PL06021A2A05 cDNA from juvenile hermaphodites Schmidtea mediterranea cDNA 5', mRNA sequence.    46   1.1    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54WR2) RecName: Full=Translational activator gcn1; AltName: Fu...   337   1e-92
AL954693_2(AL954693|pid:none) Zebrafish DNA sequence from clone ...   169   6e-41
BC168513_1(BC168513|pid:none) Danio rerio cDNA clone IMAGE:69620...   167   2e-40
AC004812_3(AC004812|pid:none) Homo sapiens PAC clone 267D11 from...   166   5e-40
U77700_1(U77700|pid:none) Homo sapiens HsGCN1 mRNA, partial cds.      166   5e-40
(Q99736) RecName: Full=Translational activator GCN1; AltName: Fu...   166   5e-40
D86973_1(D86973|pid:none) Homo sapiens mRNA for KIAA0219 gene, p...   166   5e-40
BC169100_1(BC169100|pid:none) Rattus norvegicus GCN1 general con...   164   1e-39
BC135787_1(BC135787|pid:none) Xenopus tropicalis GCN1 general co...   164   2e-39
AB093217_1(AB093217|pid:none) Mus musculus mRNA for mKIAA0219 pr...   163   3e-39

 psg: 0.75  gvh: 0.24  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for VHD771 is cyt

>VHD771F.Seq
AATCAAATAATAGTTCTTATAATGCTAAAGATGATGATGATGATGAACCAGGTTCAAGTG
GTAATGATATTCAAAAGATTTTAGGTAAAGAAAGATTAGGTCGTATTCTTTCATCATTGT
ATATGATGAGATTTGATAATAATTCATCAGTTCGTCAAAAGGTATTATTAATTTGGAAAT
ATATTGTTAGTAATACACCAAAGACACTTCGTGAGATTTTACCAACTCTTATTGAAATGA
TTATTAGTTCCATTGGTTCAAATAATGTTGAAAAGAGACAAATTTCCGCTAAAACTTTGG
GTGATATTGTTAGTAAACTTAGTGATCGTATTTTACCAGAGATTTTACCAATTCTTGAAC
GTGGTCTTAGATCAGAACTCGAAGAAACTAGACAAGGTGTTTGTATTGGTCTTAGTGAAG
TTATTTCCTCTGCAAAGACTCAATTACTTCCATACCTTTCAAGTGTTGTAACTTGTATCA
CCAAAGCATTATGTGATCCACTCATTGATGTTAGAGAGGCAGCCCGCTAAAGCTTTCGAT
CATCTCTATCATACNNNNNNNNNN