NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHD683
Library VH
(Link to library)
Clone ID VHD683
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10797-1
Original site URL
Representative seq. ID VHD683P
(Link to Original site)
Representative DNA sequence 
>VHD683 (VHD683Q) /CSM/VH/VHD6-D/VHD683Q.Seq.d/
ATTTTTTATTTTATAATCACTGTATAAACAAAAATTTATATATATATATATAGAATTTAA
ATAAAGATATGTTCAAACAAACATTTAAAGTAAATATTATACCGACCCAACCATTTGAAG
GTCAAAAACCAGGTACATCTGGTTTAAGAAAAAAAGTAACTGAAGTAATGAAGACAAATT
ACCTTGGTAACTTTGTTCAATCAATTTTCAATGCTTTACCAGAAGATAAATTAAAAGGAT
CAACTATTGTTGTTGGTGGTGATGGTCGTTACTACAATAATGATGCTATTCAATTAATTT
TTCAAATTGCAGCAGCCAATGGAGTTGGAAAGATTTTAGTAGGAAGATATGGTTTACTTT
CAACACCAGCAATCTCTGCAATCGTTCGTGCTCGTTCAGCATTGGGTGCAATCATTTTAA
CAGCATCACATAATCCAGGTGGTCCAAATGGTGATTTTGGTATTAAATATAATATGTCCA
ATGGTGGTCCAGCTCCAGAATCAATCACCAATGCAATCTATAAACATACCACATCAATCA
CACAAATTAAGACTXXXXXXXXXXTCTTTGAAGTACCAACAGGTTGGAAATTCTTTGGTA
ACCTTATGGATGCTGGTACCCTCTCAATTTGTGGTGAGGAATCATTTGGTACTGGTTCTG
ATCATATTCGTGAAAAAGATGGTATTTGGGCTATCATTTGTTGGTTACAAATTTTAACTC
ATCATAATCAATCAACCAATGATAAGAACTTTGTTTCCATTGAAGAGATTGTCAAACAAC
ATTGGGCAAAATATGGTAGAAACTATTATTCTCGTTACGATTATGAAGAAATTGACACTG
CTCCAGCCGAAGCAATGATGAAACATGTTTCTCAACAAATTGAATCCAAACAATTGATTG
GTAAGAAATTCACTGGTATCTCTGATTCTTTGGAATATGAAATTGCATCTTGTGATGATT
TTGAATATAAAGATCCAATTGATAGTTCAGTTTCCTCTCATCAAGGTCTTCGTATCATTT
TCACTGATGGCTCAAGAATTATCTATCGTTTAAGTGGTACTGGTTCAACTGGTGCCACAG
TTCGTGTTTATTTCGATAAATATGAAACTCAACCTACTCAATTAAATAATGATGTTCAAA
CTCATCTTAAATCTTTAATTCATATTGCACTTGTTGAAATTTCAAAATTAAATCATTATA
CTGGTAGAAATGAACCAAATGTAATTACATAAATAAATAAAATTTTAATAAACAAATAAA
TAAATAAATAAAAAGTA
sequence update 2002.10.25
Translated Amino Acid sequence 
flfynhcinknlyiyi*NLNKDMFKQTFKVNIIPTQPFEGQKPGTSGLRKKVTEVMKTNY
LGNFVQSIFNALPEDKLKGSTIVVGGDGRYYNNDAIQLIFQIAAANGVGKILVGRYGLLS
TPAISAIVRARSALGAIILTASHNPGGPNGDFGIKYNMSNGGPAPESITNAIYKHTTSIT
QIKT---

---FEVPTGWKFFGNLMDAGTLSICGEESFGTGSDHIREKDGIWAIICWLQILTHHNQST
NDKNFVSIEEIVKQHWAKYGRNYYSRYDYEEIDTAPAEAMMKHVSQQIESKQLIGKKFTG
ISDSLEYEIASCDDFEYKDPIDSSVSSHQGLRIIFTDGSRIIYRLSGTGSTGATVRVYFD
KYETQPTQLNNDVQTHLKSLIHIALVEISKLNHYTGRNEPNVIT*inkilink*ink*kv
Translated Amino Acid sequence (All Frames) 
Frame A:
ifyfiitv*tkiyiyiyri*ikicsnkhlk*ilyrpnhlkvknqvhlv*ekk*lk**rqi
tlvtlfnqfsmlyqkin*kdqllllvvmvvttimmlfn*ffklqqpmelerf**edmvyf
qhqqslqsfvlvqhwvqsf*qhhiiqvvqmvilvlniicpmvvqlqnqspmqsiniphqs
hklr---

---slkyqqvgnslvtlwmlvpsqfvvrnhlvlvliifvkkmvfglsfvgykf*liiinq
pmirtlfplkrlsnnigqnmvetiilvtimkkltllqpkq**nmflnklnpnn*lvrnsl
vslilwnmklhlvmilnikiqlivqfplikvfvsfslmaqelsiv*vvlvqlvpqfvfis
inmklnlln*immfklilnl*filhllkfqn*iiilvemnqm*lhk*ikf**tnk*inkk

Frame B:
ffil*slykqkfiyiyiefk*ryvqtni*skyytdpti*rsktryiwfkkksn*snedkl
pw*lcsinfqcftrr*ikrinyccww*wsllq**cysinfsncssqwswkdfsrkiwftf
ntsnlcnrscsfsigcnhfnsit*srwskw*fwy*i*yvqwwsssrinhqcnl*tyhinh
tn*d---

---l*stnrleilw*pygcwyplnlw*giiwywf*sys*krwylgyhllvtnfnss*sin
q**elcfh*rdcqttlgkiw*kllfslrl*rn*hcssrsndetcfstn*iqtidw*eihw
yl*ffgi*ncil**f*i*rsn**fsflssrssyhfh*wlknylsfkwywfnwchssclfr
*i*nstysik**csnss*ifnsyctc*nfkikslyw*k*tkcnyink*nfnkqink*iks

Frame C:
flfynhcinknlyiyi*NLNKDMFKQTFKVNIIPTQPFEGQKPGTSGLRKKVTEVMKTNY
LGNFVQSIFNALPEDKLKGSTIVVGGDGRYYNNDAIQLIFQIAAANGVGKILVGRYGLLS
TPAISAIVRARSALGAIILTASHNPGGPNGDFGIKYNMSNGGPAPESITNAIYKHTTSIT
QIKT---

---FEVPTGWKFFGNLMDAGTLSICGEESFGTGSDHIREKDGIWAIICWLQILTHHNQST
NDKNFVSIEEIVKQHWAKYGRNYYSRYDYEEIDTAPAEAMMKHVSQQIESKQLIGKKFTG
ISDSLEYEIASCDDFEYKDPIDSSVSSHQGLRIIFTDGSRIIYRLSGTGSTGATVRVYFD
KYETQPTQLNNDVQTHLKSLIHIALVEISKLNHYTGRNEPNVIT*inkilink*ink*kv
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHD683 (VHD683Q) /CSM/VH/VHD6-D/VHD683Q.Seq.d/                       2206   0.0
AFI424 (AFI424Q) /CSM/AF/AFI4-A/AFI424Q.Seq.d/                       1292   0.0
VHK768 (VHK768Q) /CSM/VH/VHK7-C/VHK768Q.Seq.d/                       1287   0.0
AFO149 (AFO149Q) /CSM/AF/AFO1-C/AFO149Q.Seq.d/                       1287   0.0
VHL451 (VHL451Q) /CSM/VH/VHL4-C/VHL451Q.Seq.d/                       1267   0.0
AFM194 (AFM194Q) /CSM/AF/AFM1-D/AFM194Q.Seq.d/                       1267   0.0
CHB413 (CHB413Q) /CSM/CH/CHB4-A/CHB413Q.Seq.d/                       1259   0.0
VFL815 (VFL815Q) /CSM/VF/VFL8-A/VFL815Q.Seq.d/                       1243   0.0
AFM220 (AFM220Q) /CSM/AF/AFM2-A/AFM220Q.Seq.d/                       1239   0.0
AFF233 (AFF233Q) /CSM/AF/AFF2-B/AFF233Q.Seq.d/                       1233   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U61984|U61984.1 Dictyostelium discoideum phosphoglucomutase A (pgmA) mRNA, complete cds.  1292   0.0    1
DY891304|DY891304.1 CeleSEQ8023 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ8023, mRNA sequence.   109   2e-27  3
DQ681648|DQ681648.1 Synthetic construct Francisella tularensis clone FLH204712.01X pgm gene, complete sequence.    72   8e-27  5
AY871860|AY871860.1 Synthetic construct hypothetical protein (FTT0414) gene, complete cds.    72   1e-26  5
AF020726|AF020726.1 Tetrahymena thermophila phosphoglucomutase (PGM1) gene, complete cds.    42   1e-22  9
CN758374|CN758374.1 ID0AAA22AC02RM1 ApMS Acyrthosiphon pisum cDNA clone ID0AAA22AC02 5', mRNA sequence.    80   3e-22  4
CN760220|CN760220.1 ID0AAA27DC07RM1 ApMS Acyrthosiphon pisum cDNA clone ID0AAA27DC07 5', mRNA sequence.    80   1e-20  4
EE007002|EE007002.1 ROE00006339 Rhizopus oryzae Company Rhizopus oryzae cDNA, mRNA sequence.    82   4e-20  3
ES219849|ES219849.1 MpGnorm_ag4_O01 Myzus persicae, tobacco lineage, aphid digestive tract normalized library Myzus persicae cDNA clone MpGnorm_ag4_O01, mRNA sequence.    80   7e-20  4
DY886146|DY886146.1 CeleSEQ1683 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ1683, mRNA sequence.   109   2e-19  1
dna update 2007. 6.24
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q23919) RecName: Full=Phosphoglucomutase-1;          Short=PGM ...   457   e-127
AE017356_43(AE017356|pid:none) Cryptococcus neoformans var. neof...   268   3e-70
AY059926_1(AY059926|pid:none) Arabidopsis thaliana phosphoglucom...   265   2e-69
BT043631_1(BT043631|pid:none) Salmo salar clone HM5_0587 phospho...   264   6e-69
(Q9SGC1) RecName: Full=Probable phosphoglucomutase, cytoplasmic ...   263   8e-69
AK064893_1(AK064893|pid:none) Oryza sativa Japonica Group cDNA c...   259   1e-67
(Q9M4G4) RecName: Full=Phosphoglucomutase, cytoplasmic;         ...   258   4e-67
(P93262) RecName: Full=Phosphoglucomutase, cytoplasmic;         ...   257   5e-67
AK293298_1(AK293298|pid:none) Homo sapiens cDNA FLJ50439 complet...   256   9e-67
BC090856_1(BC090856|pid:none) Homo sapiens phosphoglucomutase 1,...   256   9e-67
protein update 2009. 6.29
PSORT 

 psg: 0.71  gvh: 0.44  alm: 0.35  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.06
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 32.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for VHD683 is cyt
5' end seq. ID VHD683F
5' end seq. 
>VHD683F.Seq
ATTTTTTATTTTATAATCACTGTATAAACAAAAATTTATATATATATATATAGAATTTAA
ATAAAGATATGTTCAAACAAACATTTAAAGTAAATATTATACCGACCCAACCATTTGAAG
GTCAAAAACCAGGTACATCTGGTTTAAGAAAAAAAGTAACTGAAGTAATGAAGACAAATT
ACCTTGGTAACTTTGTTCAATCAATTTTCAATGCTTTACCAGAAGATAAATTAAAAGGAT
CAACTATTGTTGTTGGTGGTGATGGTCGTTACTACAATAATGATGCTATTCAATTAATTT
TTCAAATTGCAGCAGCCAATGGAGTTGGAAAGATTTTAGTAGGAAGATATGGTTTACTTT
CAACACCAGCAATCTCTGCAATCGTTCGTGCTCGTTCAGCATTGGGTGCAATCATTTTAA
CAGCATCACATAATCCAGGTGGTCCAAATGGTGATTTTGGTATTAAATATAATATGTCCA
ATGGTGGTCCAGCTCCAGAATCAATCACCAATGCAATCTATAAACATACCACATCAATCA
CACAAATTAAGACTNNNNNNNNNN
Length of 5' end seq. 564
3' end seq. ID VHD683Z
3' end seq. 
>VHD683Z.Seq
NNNNNNNNNNTCTTTGAAGTACCAACAGGTTGGAAATTCTTTGGTAACCTTATGGATGCT
GGTACCCTCTCAATTTGTGGTGAGGAATCATTTGGTACTGGTTCTGATCATATTCGTGAA
AAAGATGGTATTTGGGCTATCATTTGTTGGTTACAAATTTTAACTCATCATAATCAATCA
ACCAATGATAAGAACTTTGTTTCCATTGAAGAGATTGTCAAACAACATTGGGCAAAATAT
GGTAGAAACTATTATTCTCGTTACGATTATGAAGAAATTGACACTGCTCCAGCCGAAGCA
ATGATGAAACATGTTTCTCAACAAATTGAATCCAAACAATTGATTGGTAAGAAATTCACT
GGTATCTCTGATTCTTTGGAATATGAAATTGCATCTTGTGATGATTTTGAATATAAAGAT
CCAATTGATAGTTCAGTTTCCTCTCATCAAGGTCTTCGTATCATTTTCACTGATGGCTCA
AGAATTATCTATCGTTTAAGTGGTACTGGTTCAACTGGTGCCACAGTTCGTGTTTATTTC
GATAAATATGAAACTCAACCTACTCAATTAAATAATGATGTTCAAACTCATCTTAAATCT
TTAATTCATATTGCACTTGTTGAAATTTCAAAATTAAATCATTATACTGGTAGAAATGAA
CCAAATGTAATTACATAAATAAATAAAATTTTAATAAACAAATAAATAAATAAATAAAAA
GTA
Length of 3' end seq. 723
Connected seq. ID VHD683P
Connected seq. 
>VHD683P.Seq
ATTTTTTATTTTATAATCACTGTATAAACAAAAATTTATATATATATATATAGAATTTAA
ATAAAGATATGTTCAAACAAACATTTAAAGTAAATATTATACCGACCCAACCATTTGAAG
GTCAAAAACCAGGTACATCTGGTTTAAGAAAAAAAGTAACTGAAGTAATGAAGACAAATT
ACCTTGGTAACTTTGTTCAATCAATTTTCAATGCTTTACCAGAAGATAAATTAAAAGGAT
CAACTATTGTTGTTGGTGGTGATGGTCGTTACTACAATAATGATGCTATTCAATTAATTT
TTCAAATTGCAGCAGCCAATGGAGTTGGAAAGATTTTAGTAGGAAGATATGGTTTACTTT
CAACACCAGCAATCTCTGCAATCGTTCGTGCTCGTTCAGCATTGGGTGCAATCATTTTAA
CAGCATCACATAATCCAGGTGGTCCAAATGGTGATTTTGGTATTAAATATAATATGTCCA
ATGGTGGTCCAGCTCCAGAATCAATCACCAATGCAATCTATAAACATACCACATCAATCA
CACAAATTAAGACT----------TCTTTGAAGTACCAACAGGTTGGAAATTCTTTGGTA
ACCTTATGGATGCTGGTACCCTCTCAATTTGTGGTGAGGAATCATTTGGTACTGGTTCTG
ATCATATTCGTGAAAAAGATGGTATTTGGGCTATCATTTGTTGGTTACAAATTTTAACTC
ATCATAATCAATCAACCAATGATAAGAACTTTGTTTCCATTGAAGAGATTGTCAAACAAC
ATTGGGCAAAATATGGTAGAAACTATTATTCTCGTTACGATTATGAAGAAATTGACACTG
CTCCAGCCGAAGCAATGATGAAACATGTTTCTCAACAAATTGAATCCAAACAATTGATTG
GTAAGAAATTCACTGGTATCTCTGATTCTTTGGAATATGAAATTGCATCTTGTGATGATT
TTGAATATAAAGATCCAATTGATAGTTCAGTTTCCTCTCATCAAGGTCTTCGTATCATTT
TCACTGATGGCTCAAGAATTATCTATCGTTTAAGTGGTACTGGTTCAACTGGTGCCACAG
TTCGTGTTTATTTCGATAAATATGAAACTCAACCTACTCAATTAAATAATGATGTTCAAA
CTCATCTTAAATCTTTAATTCATATTGCACTTGTTGAAATTTCAAAATTAAATCATTATA
CTGGTAGAAATGAACCAAATGTAATTACATAAATAAATAAAATTTTAATAAACAAATAAA
TAAATAAATAAAAAGTA
Length of connected seq. 1267
Full length Seq ID -
Full length Seq. -
Length of full length seq. -