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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHD679
Library VH
(Link to library)
Clone ID VHD679
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16586-1
Original site URL
Representative seq. ID VHD679P
(Link to Original site)
Representative DNA sequence 
>VHD679 (VHD679Q) /CSM/VH/VHD6-D/VHD679Q.Seq.d/
AATCTCTACCATACCTTTCAATCGTTTATTCATCCCTTATCAAAAACACACACACACACA
TATATATATAAAATTAATTTATTACTTTTTATTTGTCATAAAAAAAAAAAAAATANCAAT
AATAATAATAATTTTTTAAAAATAAAAAAATAAAAAANTAAAANCAAATTAAAAAATAAT
TTAATAATAATAATTTTTCNTTTNTAAAGAANACAANCAANTAAAAAAAATAAAATANTA
AATAAANTTTAAAAAAAAAAXXXXXXXXXXTTGATTGAAGGTTTCATTCGTCAAATCATT
GGTGTTGAACAAGCCGTAGTAATTGGTGATCGTCAAAAATATTTAGTTGCTTTGGTCACT
GTCAATGCTGATTTATTCAAGTTATTACCAGGTCAAGGTTACACTCATCCATTACCAAAA
TCAATGGAAGAAGCTTCAACAGATAAACATTTCATTGCCTATATTGATTCTCAAATGAAA
GATATTAATTCAAAACTTCCAAATGTTTCAACAATTAAAAAAGTTAAAATTTTACCAGTT
GAATTCCAAGAAACTGGTGAAACTTCTGAATTAACTCCAACTAAAAAATTAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
istipfnrlfipyqkhththiyikliyyflfvikkkkixiiiiif*k*knkkxkxn*kii
****ffxxkexxqxkkikx*IXFKKK---

---LIEGFIRQIIGVEQAVVIGDRQKYLVALVTVNADLFKLLPGQGYTHPLPKSMEEAST
DKHFIAYIDSQMKDINSKLPNVSTIKKVKILPVEFQETGETSELTPTKKLK
Translated Amino Acid sequence (All Frames) 
Frame A:
nlyhtfqsfihplskththtyiykinlllfichkkkknxnnnnnflkikk*kxkxklknn
liiiifxx*rxqxxkknkixnkx*kk---

---LIEGFIRQIIGVEQAVVIGDRQKYLVALVTVNADLFKLLPGQGYTHPLPKSMEEAST
DKHFIAYIDSQMKDINSKLPNVSTIKKVKILPVEFQETGETSELTPTKKLK

Frame B:
istipfnrlfipyqkhththiyikliyyflfvikkkkixiiiiif*k*knkkxkxn*kii
****ffxxkexxqxkkikx*IXFKKK---

---*lkvsfvkslvlnkp**lvivkni*llwslsmliyssyyqvkvtlihyqnqwkklqq
inislpililk*kiliqnfqmfqqlkklkfyqlnskklvklln*lqlkn*k

Frame C:
slpylsivyssliknththiyi*n*fitfyls*kkkkxq****ffknkkikx*xqikk*f
nnnnfsfxkxtxx*kk*nxk*xlkkk---

---d*rfhssnhwc*tsrsnw*sskifscfghcqc*fiqvitrsrlhssitkingrsfnr
*tfhcly*fsnery*fktskcfnn*ks*nfts*iprnw*nf*insn*kik
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHQ345 (VHQ345Q) /CSM/VH/VHQ3-B/VHQ345Q.Seq.d/                        618   e-176
VHM850 (VHM850Q) /CSM/VH/VHM8-C/VHM850Q.Seq.d/                        618   e-176
VHE260 (VHE260Q) /CSM/VH/VHE2-C/VHE260Q.Seq.d/                        618   e-176
VHD679 (VHD679Q) /CSM/VH/VHD6-D/VHD679Q.Seq.d/                        618   e-176
VHB722 (VHB722Q) /CSM/VH/VHB7-A/VHB722Q.Seq.d/                        618   e-176
VHA335 (VHA335Q) /CSM/VH/VHA3-B/VHA335Q.Seq.d/                        618   e-176
SHA336 (SHA336Q) /CSM/SH/SHA3-B/SHA336Q.Seq.d/                        618   e-176
CHR348 (CHR348Q) /CSM/CH/CHR3-B/CHR348Q.Seq.d/                        618   e-176
CHQ796 (CHQ796Q) /CSM/CH/CHQ7-D/CHQ796Q.Seq.d/                        618   e-176
CHP847 (CHP847Q) /CSM/CH/CHP8-B/CHP847Q.Seq.d/                        618   e-176
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AM458057|AM458057.2 Vitis vinifera contig VV78X226249.7, whole genome shotgun sequence.    56   0.001  1
BX548045|BX548045.6 Zebrafish DNA sequence from clone DKEY-224A6 in linkage group 17.    46   0.002  2
BX927226|BX927226.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone  DKEY-6J23.    46   0.003  2
DV182098|DV182098.1 EST-161-5 Young leaves inoculated with powdery mildew pathogen (Uncinula necator) cDNA library of Chinese wild grape Vitis pseudoreticulata cDNA 5', mRNA sequence.    52   0.018  1
EJ970719|EJ970719.1 1093022079894 Global-Ocean-Sampling_GS-30-02-01-1P0-1P3KB marine metagenome genomic clone 1061002920862 5', genomic survey sequence.    52   0.018  1
EJ277446|EJ277446.1 1095366029905 Global-Ocean-Sampling_GS-27-01-01-1P8-2P0KB marine metagenome genomic clone 1061005468816 5', genomic survey sequence.    52   0.018  1
CT518011|CT518011.1 A BAC library has been constructed from cultivar Cabernet Sauvignon  using two different restriction enzymes : HindIII (clone prefix :  VCS1H) and EcoRI (clone prefix : VCS1E).    50   0.073  1
CT497858|CT497858.1 A BAC library has been constructed from cultivar Cabernet Sauvignon  using two different restriction enzymes : HindIII (clone prefix :  VCS1H) and EcoRI (clone prefix : VCS1E).    50   0.073  1
AM488596|AM488596.2 Vitis vinifera contig VV78X275768.5, whole genome shotgun sequence.    50   0.073  1
AM464424|AM464424.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X163662.5, clone ENTAV 115.    50   0.073  1
dna update 2007. 6.24
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AP011115_849(AP011115|pid:none) Rhodococcus opacus B4 DNA, compl...    66   8e-10
AE000516_2307(AE000516|pid:none) Mycobacterium tuberculosis CDC1...    65   1e-09
AM408590_2207(AM408590|pid:none) Mycobacterium bovis BCG Pasteur...    65   1e-09
BX842579_25(BX842579|pid:none) Mycobacterium tuberculosis H37Rv ...    65   1e-09
CP000480_4107(CP000480|pid:none) Mycobacterium smegmatis str. MC...    65   1e-09
AL022602_30(AL022602|pid:none) Mycobacterium leprae cosmid B268.       64   3e-09
A87020(A87020) probable long-chain-fatty-acid-CoA ligase [import...    64   3e-09
CP000656_2943(CP000656|pid:none) Mycobacterium gilvum PYR-GCK, c...    64   3e-09
CP000431_5975(CP000431|pid:none) Rhodococcus jostii RHA1, comple...    60   5e-08
CP000580_3258(CP000580|pid:none) Mycobacterium sp. JLS, complete...    60   6e-08
protein update 2009. 6.29
PSORT 

 psg: 0.74  gvh: 0.50  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 32.0 %: nuclear
	 20.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for VHD679 is cyt
5' end seq. ID VHD679F
5' end seq. 
>VHD679F.Seq
AATCTCTACCATACCTTTCAATCGTTTATTCATCCCTTATCAAAAACACACACACACACA
TATATATATAAAATTAATTTATTACTTTTTATTTGTCATAAAAAAAAAAAAAATANCAAT
AATAATAATAATTTTTTAAAAATAAAAAAATAAAAAANTAAAANCAAATTAAAAAATAAT
TTAATAATAATAATTTTTCNTTTNTAAAGAANACAANCAANTAAAAAAAATAAAATANTA
AATAAANTTTAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 270
3' end seq. ID VHD679Z
3' end seq. 
>VHD679Z.Seq
NNNNNNNNNNTTGATTGAAGGTTTCATTCGTCAAATCATTGGTGTTGAACAAGCCGTAGT
AATTGGTGATCGTCAAAAATATTTAGTTGCTTTGGTCACTGTCAATGCTGATTTATTCAA
GTTATTACCAGGTCAAGGTTACACTCATCCATTACCAAAATCAATGGAAGAAGCTTCAAC
AGATAAACATTTCATTGCCTATATTGATTCTCAAATGAAAGATATTAATTCAAAACTTCC
AAATGTTTCAACAATTAAAAAAGTTAAAATTTTACCAGTTGAATTCCAAGAAACTGGTGA
AACTTCTGAATTAACTCCAACTAAAAAATTAAAAA
Length of 3' end seq. 335
Connected seq. ID VHD679P
Connected seq. 
>VHD679P.Seq
AATCTCTACCATACCTTTCAATCGTTTATTCATCCCTTATCAAAAACACACACACACACA
TATATATATAAAATTAATTTATTACTTTTTATTTGTCATAAAAAAAAAAAAAATANCAAT
AATAATAATAATTTTTTAAAAATAAAAAAATAAAAAANTAAAANCAAATTAAAAAATAAT
TTAATAATAATAATTTTTCNTTTNTAAAGAANACAANCAANTAAAAAAAATAAAATANTA
AATAAANTTTAAAAAAAAAA----------TTGATTGAAGGTTTCATTCGTCAAATCATT
GGTGTTGAACAAGCCGTAGTAATTGGTGATCGTCAAAAATATTTAGTTGCTTTGGTCACT
GTCAATGCTGATTTATTCAAGTTATTACCAGGTCAAGGTTACACTCATCCATTACCAAAA
TCAATGGAAGAAGCTTCAACAGATAAACATTTCATTGCCTATATTGATTCTCAAATGAAA
GATATTAATTCAAAACTTCCAAATGTTTCAACAATTAAAAAAGTTAAAATTTTACCAGTT
GAATTCCAAGAAACTGGTGAAACTTCTGAATTAACTCCAACTAAAAAATTAAAAA
Length of connected seq. 585
Full length Seq ID -
Full length Seq. -
Length of full length seq. -