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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHD658
Library VH
(Link to library)
Clone ID VHD658
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15040-1
Original site URL
Representative seq. ID VHD658P
(Link to Original site)
Representative DNA sequence 
>VHD658 (VHD658Q) /CSM/VH/VHD6-C/VHD658Q.Seq.d/
ACCATATTTATCAATTTAAACATATAAAATGCCTAAGAATAAGGGAAAAGGTGGTAAAAA
TCGTAGAAGAGGTAAGAACGAGAATGAACAAAAGAGAGAACTTCAATTCAAAGAAGAAGG
CCAAGAATATGCTCAAGTATTAAGAATGTTAGGTAATGGTCGTTTAGAAGCCTCTTGTTT
TGATGGTGAAAAACGTTTATGTCACATTAGTGGTAGATTAAGAAAGAAGGAATGGATCAA
CAATGGTGATATCATTTTAATTCAACTTAGAGACTACCAAAATGATAAAGCTGATGTTAT
CCTTCGTTACAATGTCGATGAAGCTCGTAATCTTAAAACTTATGGTGAATTACCAGAAAC
CGCTAGAATTAATGAAACTGATGCATTTGATGATGTTGAAGATATTCCATTCGAATTCGT
TGCTGAAGATGATATCGATATTGATACTCTTTAAACAAAGACATTATTTATATATAGAAA
TATTAAACAGTATTTAATGCTGTAGTATAATAGTAACAGAGCAAAATTATCCCCCCCAAA
AAAAAAAXXXXXXXXXXACCATATTTATCAATTTAAACATATAAAATGCCTAAGAATAAG
GGAAAAGGTGGTAAAAATCGTAGAAGAGGTAAGAACGAGAATGAACAAAAGAGAGAACTT
CAATTCAAAGAAGAAGGCCAAGAATATGCTCAAGTATTAAGAATGTTAGGTAATGGTCGT
TTAGAAGCCTCTTGTTTTGATGGTGAAAAACGTTTATGTCACATTAGTGGTAGATTAAGA
AAGAAGGAATGGATCAACAATGGTGATATCATTTTAATTCAACTTAGAGACTACCAAAAT
GATAAAGCTGATGTTATCCTTCGTTACAATGTCGATGAAGCTCGTAATCTTAAAACTTAT
GGTGAATTACCAGAAACCGCTAGAATTAATGAAACTGATGCATTTGATGATGTTGAAGAT
ATTCCATTCGAATTCGTTGCTGAAGATGATATCGATATTGATACTCTTTAAACAAAGACA
TTATTTATATATAGAAATATTAAACAGTATTTAATGCTGTAGTATAATAGTAACAGAGCA
AAATTATCCCCC
sequence update 2002.10.25
Translated Amino Acid sequence 
hiyqfkhikclrirekvvkiveevrtrmnkrenfnskkkaknmlky*ec*vmvv*kplvl
mvknvyvtlvvd*errngstmvisf*fnlettkmiklmlsfvtmsmklvilklmvnyqkp
lelmklmhlmmlkifhsnsllkmisililfkqrhylyieilnsi*CCSIIVTEQNYPPQK
K---

---HIYQFKHIKCLRIREKVVKIVEEVRTRMNKRENFNSKKKAKNMLKY*ec*vmvv*kp
lvlmvknvyvtlvvd*errngstmvisf*fnlettkmiklmlsfvtmsmklvilklmvny
qkplelmklmhlmmlkifhsnsllkmisililfkqrhylyieilnsi*ccsiivteqnyp
Translated Amino Acid sequence (All Frames) 
Frame A:
tifinlni*na*e*gkrw*ks*kr*ere*tkertsiqrrrpricssiknvr*wsfrsllf
*w*ktfmsh*w*ikkegmdqqw*yhfnst*rlpk**s*cypslqcr*ss*s*nlw*itrn
r*n**n*ci**c*rysirirc*r*yry*yslnkdiiyi*ky*tvfnavv***qskiippk
kk---

---tifinlni*na*e*gkrw*ks*kr*ere*tkertsiqrrrpricssiknvr*wsfrs
llf*w*ktfmsh*w*ikkegmdqqw*yhfnst*rlpk**s*cypslqcr*ss*s*nlw*i
trnr*n**n*ci**c*rysirirc*r*yry*yslnkdiiyi*ky*tvfnavv***qskii
p

Frame B:
pylsi*tykmpknkgkggknrrrgkneneqkrelqfkeegqeyaqvlrmlgngrleascf
dgekrlchisgrlrkkewinngdiiliqlrdyqndkadvilrynvdearnlktygelpet
arinetdafddvedipfefvaeddididtl*tktlfiyrnikqylml*ynsnraklsppk
kk---

---pylsi*tykmpknkgkggknrrrgkneneqkrelqfkeegqeyaqvlrmlgngrlea
scfdgekrlchisgrlrkkewinngdiiliqlrdyqndkadvilrynvdearnlktygel
petarinetdafddvedipfefvaeddididtl*tktlfiyrnikqylml*ynsnrakls
p

Frame C:
hiyqfkhikclrirekvvkiveevrtrmnkrenfnskkkaknmlky*ec*vmvv*kplvl
mvknvyvtlvvd*errngstmvisf*fnlettkmiklmlsfvtmsmklvilklmvnyqkp
lelmklmhlmmlkifhsnsllkmisililfkqrhylyieilnsi*CCSIIVTEQNYPPQK
K---

---HIYQFKHIKCLRIREKVVKIVEEVRTRMNKRENFNSKKKAKNMLKY*ec*vmvv*kp
lvlmvknvyvtlvvd*errngstmvisf*fnlettkmiklmlsfvtmsmklvilklmvny
qkplelmklmhlmmlkifhsnsllkmisililfkqrhylyieilnsi*ccsiivteqnyp
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHD658 (VHD658Q) /CSM/VH/VHD6-C/VHD658Q.Seq.d/                       1061   0.0
VSF521 (VSF521Q) /CSM/VS/VSF5-A/VSF521Q.Seq.d/                       1037   0.0
SSK711 (SSK711Q) /CSM/SS/SSK7-A/SSK711Q.Seq.d/                       1037   0.0
FC-AJ05 (FC-AJ05Q) /CSM/FC/FC-AJ/FC-AJ05Q.Seq.d/                     1037   0.0
AHL228 (AHL228Q) /CSM/AH/AHL2-B/AHL228Q.Seq.d/                        999   0.0
SSK248 (SSK248Q) /CSM/SS/SSK2-B/SSK248Q.Seq.d/                        930   0.0
SSF521 (SSF521Q) /CSM/SS/SSF5-A/SSF521Q.Seq.d/                        882   0.0
SSL769 (SSL769Q) /CSM/SS/SSL7-C/SSL769Q.Seq.d/                        646   0.0
VSC777 (VSC777Q) /CSM/VS/VSC7-D/VSC777Q.Seq.d/                        414   e-114
VSA233 (VSA233Q) /CSM/VS/VSA2-B/VSA233Q.Seq.d/                        385   e-105
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CB909835|CB909835.1 USDA-FP_101578 Adult Alate Brown Citrus Aphid Toxoptera citricidacDNA clone WHWTC-22_F01 5', mRNA sequence.    80   7e-27  4
DW013201|DW013201.1 w1h14_M13F Myzus persicae, tobacco lineage, whole aphid library Myzus persicae cDNA clone w1h14_M13F, mRNA sequence.    88   1e-24  4
DR391352|DR391352.1 USDA-FP_151284 Adult Alate Aphis gossypii (WHAGA) Aphis gossypii cDNA clone WHAGA028_B07 5', mRNA sequence.    72   2e-24  4
DR397070|DR397070.1 USDA-FP_157009 Adult Alate Aphis gossypii (WHAGA) Aphis gossypii cDNA clone WHAGA106_A10 5', mRNA sequence.    72   4e-24  4
BJ927505|BJ927505.1 Daphnia magna cDNA, clone:IGU001_0022_H01.f, 5' end, expressed in whole body.    72   8e-24  4
DR389507|DR389507.1 USDA-FP_149327 Adult Alate Aphis gossypii (WHAGA) Aphis gossypii cDNA clone WHAGA004_H12 5', mRNA sequence.    72   1e-22  4
EH218248|EH218248.1 USDA-FP_181049 WHMH (pink hibiscus mealybug) Maconellicoccus hirsutus cDNA clone WHMH091_H05 5', mRNA sequence.    72   1e-22  2
CV830752|CV830752.1 ID0ACC16BF03RM1 ID0ACC Acyrthosiphon pisum cDNA clone ID0ACC16BF03 5', mRNA sequence.    72   3e-20  4
CN587670|CN587670.1 USDA-FP_130745 Acyrthosiphon pisum, Pea Aphid Acyrthosiphon pisum cDNA clone WHAP100_G09, mRNA sequence.    72   4e-20  4
CF546508|CF546508.1 DS0059 Pea aphid, whole body Acyrthosiphon pisum cDNA, mRNA sequence.    72   5e-20  4
dna update 2007. 6.23
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT047385_1(BT047385|pid:none) Salmo salar clone ssal-evd-517-113...   163   9e-39
BT046728_1(BT046728|pid:none) Salmo salar clone ssal-evd-566-043...   163   1e-38
BT046786_1(BT046786|pid:none) Salmo salar clone ssal-evf-567-357...   162   2e-38
AY911362_1(AY911362|pid:none) Bos taurus clone IMAGE:7961501 X-l...   162   2e-38
BT049466_1(BT049466|pid:none) Salmo salar clone ssal-evd-532-334...   161   3e-38
BT050065_1(BT050065|pid:none) Salmo salar clone ssal-evd-558-268...   161   3e-38
AK030774_1(AK030774|pid:none) Mus musculus 8 days embryo whole b...   161   3e-38
BT049173_1(BT049173|pid:none) Salmo salar clone ssal-eve-526-175...   161   3e-38
AM910991_409(AM910991|pid:none) Plasmodium knowlesi strain H chr...   161   4e-38
(P47813) RecName: Full=Eukaryotic translation initiation factor ...   160   6e-38
protein update 2009. 6.29
PSORT 

 psg: 0.75  gvh: 0.17  alm: 0.55  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.06
 nuc: 0.12  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for VHD658 is nuc
5' end seq. ID VHD658F
5' end seq. 
>VHD658F.Seq
ACCATATTTATCAATTTAAACATATAAAATGCCTAAGAATAAGGGAAAAGGTGGTAAAAA
TCGTAGAAGAGGTAAGAACGAGAATGAACAAAAGAGAGAACTTCAATTCAAAGAAGAAGG
CCAAGAATATGCTCAAGTATTAAGAATGTTAGGTAATGGTCGTTTAGAAGCCTCTTGTTT
TGATGGTGAAAAACGTTTATGTCACATTAGTGGTAGATTAAGAAAGAAGGAATGGATCAA
CAATGGTGATATCATTTTAATTCAACTTAGAGACTACCAAAATGATAAAGCTGATGTTAT
CCTTCGTTACAATGTCGATGAAGCTCGTAATCTTAAAACTTATGGTGAATTACCAGAAAC
CGCTAGAATTAATGAAACTGATGCATTTGATGATGTTGAAGATATTCCATTCGAATTCGT
TGCTGAAGATGATATCGATATTGATACTCTTTAAACAAAGACATTATTTATATATAGAAA
TATTAAACAGTATTTAATGCTGTAGTATAATAGTAACAGAGCAAAATTATCCCCCCCAAA
AAAAAAANNNNNNNNNN
Length of 5' end seq. 557
3' end seq. ID VHD658Z
3' end seq. 
>VHD658Z.Seq
NNNNNNNNNNACCATATTTATCAATTTAAACATATAAAATGCCTAAGAATAAGGGAAAAG
GTGGTAAAAATCGTAGAAGAGGTAAGAACGAGAATGAACAAAAGAGAGAACTTCAATTCA
AAGAAGAAGGCCAAGAATATGCTCAAGTATTAAGAATGTTAGGTAATGGTCGTTTAGAAG
CCTCTTGTTTTGATGGTGAAAAACGTTTATGTCACATTAGTGGTAGATTAAGAAAGAAGG
AATGGATCAACAATGGTGATATCATTTTAATTCAACTTAGAGACTACCAAAATGATAAAG
CTGATGTTATCCTTCGTTACAATGTCGATGAAGCTCGTAATCTTAAAACTTATGGTGAAT
TACCAGAAACCGCTAGAATTAATGAAACTGATGCATTTGATGATGTTGAAGATATTCCAT
TCGAATTCGTTGCTGAAGATGATATCGATATTGATACTCTTTAAACAAAGACATTATTTA
TATATAGAAATATTAAACAGTATTTAATGCTGTAGTATAATAGTAACAGAGCAAAATTAT
CCCCC
Length of 3' end seq. 545
Connected seq. ID VHD658P
Connected seq. 
>VHD658P.Seq
ACCATATTTATCAATTTAAACATATAAAATGCCTAAGAATAAGGGAAAAGGTGGTAAAAA
TCGTAGAAGAGGTAAGAACGAGAATGAACAAAAGAGAGAACTTCAATTCAAAGAAGAAGG
CCAAGAATATGCTCAAGTATTAAGAATGTTAGGTAATGGTCGTTTAGAAGCCTCTTGTTT
TGATGGTGAAAAACGTTTATGTCACATTAGTGGTAGATTAAGAAAGAAGGAATGGATCAA
CAATGGTGATATCATTTTAATTCAACTTAGAGACTACCAAAATGATAAAGCTGATGTTAT
CCTTCGTTACAATGTCGATGAAGCTCGTAATCTTAAAACTTATGGTGAATTACCAGAAAC
CGCTAGAATTAATGAAACTGATGCATTTGATGATGTTGAAGATATTCCATTCGAATTCGT
TGCTGAAGATGATATCGATATTGATACTCTTTAAACAAAGACATTATTTATATATAGAAA
TATTAAACAGTATTTAATGCTGTAGTATAATAGTAACAGAGCAAAATTATCCCCCCCAAA
AAAAAAA----------ACCATATTTATCAATTTAAACATATAAAATGCCTAAGAATAAG
GGAAAAGGTGGTAAAAATCGTAGAAGAGGTAAGAACGAGAATGAACAAAAGAGAGAACTT
CAATTCAAAGAAGAAGGCCAAGAATATGCTCAAGTATTAAGAATGTTAGGTAATGGTCGT
TTAGAAGCCTCTTGTTTTGATGGTGAAAAACGTTTATGTCACATTAGTGGTAGATTAAGA
AAGAAGGAATGGATCAACAATGGTGATATCATTTTAATTCAACTTAGAGACTACCAAAAT
GATAAAGCTGATGTTATCCTTCGTTACAATGTCGATGAAGCTCGTAATCTTAAAACTTAT
GGTGAATTACCAGAAACCGCTAGAATTAATGAAACTGATGCATTTGATGATGTTGAAGAT
ATTCCATTCGAATTCGTTGCTGAAGATGATATCGATATTGATACTCTTTAAACAAAGACA
TTATTTATATATAGAAATATTAAACAGTATTTAATGCTGTAGTATAATAGTAACAGAGCA
AAATTATCCCCC
Length of connected seq. 1082
Full length Seq ID -
Full length Seq. -
Length of full length seq. -