VHD652
Library VH
(Link to library)
Clone ID VHD652
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15722-1
Original site URL
Representative seq. ID VHD652P
(Link to Original site)
Representative DNA sequence
>VHD652 (VHD652Q) /CSM/VH/VHD6-C/VHD652Q.Seq.d/
ATCGCTTCCGACTTCGGTTCAATAACGAAAAAGATTTTCGCCTTTTACTAAAATACTTCC
GTGAACCGAAGTCATAAAGGCAGCTTTCATTATTTTTTTGAATAGGTCTTCCTATTCCTA
AAAATTTCAATTTAAAAAAAATAAAGGAAAAAACACACCAAAATTAAATAAGTAAGAATA
AAAATGAAATATTTATTAGTATATTTACACATATTACTATTTTGTTTATTAAAGATCAAT
AGCCAAAAGTATTGCACTTATAGTGGTGTTGGAGAAGATTATAATATCAAATTTGATGTC
TTACAAACAAATGGTGGTATTGGTTTTCTATACTCATATTTAAGTGTTATTTTTACAACT
TGTAATTATACTATTCCTTGTGGTAGTAATAGTAATAATGTATTGTGTGGATCATATCAT
TCAACTGTTCCACGCAAGTATCTTTCATTGGGATTTGTTAATGGCAGTACACATAGTTAT
AGCAAAGACGGACTAATGATAACATATATATCACAGGATACAACAAATGATAATGATTGC
AAAAGATATACAACAAATGTGATXXXXXXXXXXACTTGTGATAATAATACTGGTAATTGT
ACATGCCATAATGAACATTTTGGTAATGGTTGTGAATTCACTCAATGCCCACTCTATTGT
TCAACCCCCAAATGGTACTTGTGATATTAATAGTGGTATTTGTACATGTGATAATGAACA
TATTGGTAATGGTTGNGAAATTAAATTTATTGAATGTAAACATAAATGTTCAACCAAACA
TGGAATATGTGATAATGATAGTGGTAATTGTAAATGTGATACTCAAACAAAAGGATTAAC
GTGTGAAGAATCAAGATTATTAATTGAATCATTAGACTCAATCAATTCAAAAGGTGGTAC
AATAAATATAATTGGTTATTTTGGAAATACAACATCATTATTAACAATTAAAATTGGTGA
ATCACAATGTAAAAATATCAAAGTATTCAATGAAACAACATTAAAATGTGATATTGGTGA
AGGTAAAGGTATTCATAATATTACAATCATTGATGATGACCTTTCGTTCACAGCAATCAA
TAAGTTCCAATATCTCGATGAAAAAACAAAAATCTCAAAAATATCGAGAGGTGCAATTGC
TGGTATTGTTGTTGGTTGTGNTGTTGCTGTTTCATTAATTGGTTCTATTGCTTTTTATTA
TCATCACAAAAATAAAAAGGTTAATCTTTTCTTCTAAAAACTAAAATAAAATTTAACCAT
TANGTTTTTT
sequence update 2002.10.25
Translated Amino Acid sequence
iasdfgsitkkifafy*ntsvnrshkgsfhyffe*vflflkisi*kk*rkkhtkik*VRI
KMKYLLVYLHILLFCLLKINSQKYCTYSGVGEDYNIKFDVLQTNGGIGFLYSYLSVIFTT
CNYTIPCGSNSNNVLCGSYHSTVPRKYLSLGFVNGSTHSYSKDGLMITYISQDTTNDNDC
KRYTTNV---

---LVIIILVIVHAIMNILVMVVNSLNAHSIVQPPNGTCDINSGICTCDNEHIGNGXEIK
FIECKHKCSTKHGICDNDSGNCKCDTQTKGLTCEESRLLIESLDSINSKGGTINIIGYFG
NTTSLLTIKIGESQCKNIKVFNETTLKCDIGEGKGIHNITIIDDDLSFTAINKFQYLDEK
TKISKISRGAIAGIVVGCXVAVSLIGSIAFYYHHKNKKVNLFF*klk*nltixff


Translated Amino Acid sequence (All Frames)
Frame A:
iasdfgsitkkifafy*ntsvnrshkgsfhyffe*vflflkisi*kk*rkkhtkik*VRI
KMKYLLVYLHILLFCLLKINSQKYCTYSGVGEDYNIKFDVLQTNGGIGFLYSYLSVIFTT
CNYTIPCGSNSNNVLCGSYHSTVPRKYLSLGFVNGSTHSYSKDGLMITYISQDTTNDNDC
KRYTTNV---

---tcdnntgnctchnehfgngceftqcplycstpkwyl*y**wylym***tyw*wlxn*
iy*m*t*mfnqtwnm****w*l*m*ysnkrinv*rikiin*iirlnqfkrwynkynwlfw
kyniiinn*nw*itm*kyqsiq*nnikm*yw*r*rys*yynh***pfvhsnq*vpisr*k
nknlkniercncwyccwlxcccfinwfycfllssqk*kg*sfllktkikfnhxvf

Frame B:
slptsvq*rkrfspftkilp*tevikaafiiflnrssys*kfqfkknkgkntpklnk*e*
k*niy*yiytyyyfvy*rsiaksialivvlekiiisnlmsykqmvvlvfythi*vlflql
viilflvvvivimycvdhiiqlfhasifhwdllmavhiviaktd***hiyhriqqmimia
kdiqqm*---

---LVIIILVIVHAIMNILVMVVNSLNAHSIVQPPNGTCDINSGICTCDNEHIGNGXEIK
FIECKHKCSTKHGICDNDSGNCKCDTQTKGLTCEESRLLIESLDSINSKGGTINIIGYFG
NTTSLLTIKIGESQCKNIKVFNETTLKCDIGEGKGIHNITIIDDDLSFTAINKFQYLDEK
TKISKISRGAIAGIVVGCXVAVSLIGSIAFYYHHKNKKVNLFF*klk*nltixff

Frame C:
rfrlrfnnekdfrlllkyfrepks*rqlslff*iglpipknfnlkkikekthqn*isknk
neifisifthitilfikdq*pkvlhl*wcwrrl*yqi*cltnkwwywfsilifkcyfynl
*lyyslw*****civwiisfncstqvsfigic*wqyt*l*qrrtndniyitgynk***lq
kiynkcd---

---l***yw*lymp**tfw*wl*ihsmptllfnpqmvlvilivvfvhvimnilvmvxkln
llnvninvqpnmeyvimivvivnvilkqkd*rvknqdy*lnh*tqsiqkvvq*i*lvile
iqhhy*qlklvnhnvkiskysmkqh*nvilvkvkvfiilqslmmtfrsqqsissnismkk
qksqkyrevqllvlllvvxllfh*lvlllfiiitkikrlifsskn*nki*plxf

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHD652 (VHD652Q) /CSM/VH/VHD6-C/VHD652Q.Seq.d/ 1740 0.0
VHQ484 (VHQ484Q) /CSM/VH/VHQ4-D/VHQ484Q.Seq.d/ 1015 0.0
VHQ244 (VHQ244Q) /CSM/VH/VHQ2-B/VHQ244Q.Seq.d/ 1015 0.0
VHQ143 (VHQ143Q) /CSM/VH/VHQ1-B/VHQ143Q.Seq.d/ 1015 0.0
VHP829 (VHP829Q) /CSM/VH/VHP8-B/VHP829Q.Seq.d/ 1015 0.0
VHP763 (VHP763Q) /CSM/VH/VHP7-C/VHP763Q.Seq.d/ 1015 0.0
VHP673 (VHP673Q) /CSM/VH/VHP6-D/VHP673Q.Seq.d/ 1015 0.0
VHP548 (VHP548Q) /CSM/VH/VHP5-B/VHP548Q.Seq.d/ 1015 0.0
VHP522 (VHP522Q) /CSM/VH/VHP5-A/VHP522Q.Seq.d/ 1015 0.0
VHP265 (VHP265Q) /CSM/VH/VHP2-C/VHP265Q.Seq.d/ 1015 0.0

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

DQ001174|DQ001174.1 Dictyostelium discoideum U5B snRNA, complete sequence. 182 7e-47 2
DQ001173|DQ001173.1 Dictyostelium discoideum U5A snRNA, complete sequence. 176 4e-45 2
AC115592|AC115592.2 Dictyostelium discoideum chromosome 2 map 1-125959 strain AX4, complete sequence. 92 3e-33 2
AC116924|AC116924.3 Dictyostelium discoideum chromosome 2 map 6357117-6445670 strain AX4, complete sequence. 90 2e-22 7
AY392441|AY392441.1 Dictyostelium discoideum possible blackjack gene, complete cds. 80 2e-10 1
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 54 6e-07 2
AC115683|AC115683.2 Dictyostelium discoideum chromosome 2 map complement(6135149-6105997) strain AX4, complete sequence. 54 5e-06 6
AC117076|AC117076.3 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence. 62 4e-05 1
AP007175|AP007175.1 Aspergillus oryzae RIB40 genomic DNA, SC010. 60 2e-04 1
AP006628|AP006628.1 Onion yellows phytoplasma OY-M DNA, complete genome. 34 0.019 18
dna update 2007. 6.23
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC117075_64(AC117075|pid:none) Dictyostelium discoideum chromoso... 125 2e-27
AC116100_9(AC116100|pid:none) Dictyostelium discoideum chromosom... 108 3e-22
AC116963_42(AC116963|pid:none) Dictyostelium discoideum chromoso... 86 4e-15
AC116967_7(AC116967|pid:none) Dictyostelium discoideum chromosom... 86 4e-15
AC117081_39(AC117081|pid:none) Dictyostelium discoideum chromoso... 81 9e-14
AC117081_43(AC117081|pid:none) Dictyostelium discoideum chromoso... 81 9e-14
AC116920_24(AC116920|pid:none) Dictyostelium discoideum chromoso... 80 2e-13
AC116920_20(AC116920|pid:none) Dictyostelium discoideum chromoso... 80 2e-13
AC116920_25(AC116920|pid:none) Dictyostelium discoideum chromoso... 79 3e-13
AC116967_8(AC116967|pid:none) Dictyostelium discoideum chromosom... 77 2e-12
protein update 2009. 6.29
PSORT

psg: 0.93 gvh: 0.70 alm: 0.12 top: 0.40 tms: 0.13 mit: 0.32 mip: 0.02
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

40.0 %: endoplasmic reticulum
20.0 %: mitochondrial
12.0 %: plasma membrane
8.0 %: extracellular, including cell wall
4.0 %: Golgi
4.0 %: nuclear
4.0 %: cytoplasmic
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for VHD652 is end

5' end seq. ID VHD652F
5' end seq.
>VHD652F.Seq
ATCGCTTCCGACTTCGGTTCAATAACGAAAAAGATTTTCGCCTTTTACTAAAATACTTCC
GTGAACCGAAGTCATAAAGGCAGCTTTCATTATTTTTTTGAATAGGTCTTCCTATTCCTA
AAAATTTCAATTTAAAAAAAATAAAGGAAAAAACACACCAAAATTAAATAAGTAAGAATA
AAAATGAAATATTTATTAGTATATTTACACATATTACTATTTTGTTTATTAAAGATCAAT
AGCCAAAAGTATTGCACTTATAGTGGTGTTGGAGAAGATTATAATATCAAATTTGATGTC
TTACAAACAAATGGTGGTATTGGTTTTCTATACTCATATTTAAGTGTTATTTTTACAACT
TGTAATTATACTATTCCTTGTGGTAGTAATAGTAATAATGTATTGTGTGGATCATATCAT
TCAACTGTTCCACGCAAGTATCTTTCATTGGGATTTGTTAATGGCAGTACACATAGTTAT
AGCAAAGACGGACTAATGATAACATATATATCACAGGATACAACAAATGATAATGATTGC
AAAAGATATACAACAAATGTGATNNNNNNNNNN
Length of 5' end seq. 573
3' end seq. ID VHD652Z
3' end seq.
>VHD652Z.Seq
NNNNNNNNNNACTTGTGATAATAATACTGGTAATTGTACATGCCATAATGAACATTTTGG
TAATGGTTGTGAATTCACTCAATGCCCACTCTATTGTTCAACCCCCAAATGGTACTTGTG
ATATTAATAGTGGTATTTGTACATGTGATAATGAACATATTGGTAATGGTTGNGAAATTA
AATTTATTGAATGTAAACATAAATGTTCAACCAAACATGGAATATGTGATAATGATAGTG
GTAATTGTAAATGTGATACTCAAACAAAAGGATTAACGTGTGAAGAATCAAGATTATTAA
TTGAATCATTAGACTCAATCAATTCAAAAGGTGGTACAATAAATATAATTGGTTATTTTG
GAAATACAACATCATTATTAACAATTAAAATTGGTGAATCACAATGTAAAAATATCAAAG
TATTCAATGAAACAACATTAAAATGTGATATTGGTGAAGGTAAAGGTATTCATAATATTA
CAATCATTGATGATGACCTTTCGTTCACAGCAATCAATAAGTTCCAATATCTCGATGAAA
AAACAAAAATCTCAAAAATATCGAGAGGTGCAATTGCTGGTATTGTTGTTGGTTGTGNTG
TTGCTGTTTCATTAATTGGTTCTATTGCTTTTTATTATCATCACAAAAATAAAAAGGTTA
ATCTTTTCTTCTAAAAACTAAAATAAAATTTAACCATTANGTTTTTT
Length of 3' end seq. 707
Connected seq. ID VHD652P
Connected seq.
>VHD652P.Seq
ATCGCTTCCGACTTCGGTTCAATAACGAAAAAGATTTTCGCCTTTTACTAAAATACTTCC
GTGAACCGAAGTCATAAAGGCAGCTTTCATTATTTTTTTGAATAGGTCTTCCTATTCCTA
AAAATTTCAATTTAAAAAAAATAAAGGAAAAAACACACCAAAATTAAATAAGTAAGAATA
AAAATGAAATATTTATTAGTATATTTACACATATTACTATTTTGTTTATTAAAGATCAAT
AGCCAAAAGTATTGCACTTATAGTGGTGTTGGAGAAGATTATAATATCAAATTTGATGTC
TTACAAACAAATGGTGGTATTGGTTTTCTATACTCATATTTAAGTGTTATTTTTACAACT
TGTAATTATACTATTCCTTGTGGTAGTAATAGTAATAATGTATTGTGTGGATCATATCAT
TCAACTGTTCCACGCAAGTATCTTTCATTGGGATTTGTTAATGGCAGTACACATAGTTAT
AGCAAAGACGGACTAATGATAACATATATATCACAGGATACAACAAATGATAATGATTGC
AAAAGATATACAACAAATGTGAT----------ACTTGTGATAATAATACTGGTAATTGT
ACATGCCATAATGAACATTTTGGTAATGGTTGTGAATTCACTCAATGCCCACTCTATTGT
TCAACCCCCAAATGGTACTTGTGATATTAATAGTGGTATTTGTACATGTGATAATGAACA
TATTGGTAATGGTTGNGAAATTAAATTTATTGAATGTAAACATAAATGTTCAACCAAACA
TGGAATATGTGATAATGATAGTGGTAATTGTAAATGTGATACTCAAACAAAAGGATTAAC
GTGTGAAGAATCAAGATTATTAATTGAATCATTAGACTCAATCAATTCAAAAGGTGGTAC
AATAAATATAATTGGTTATTTTGGAAATACAACATCATTATTAACAATTAAAATTGGTGA
ATCACAATGTAAAAATATCAAAGTATTCAATGAAACAACATTAAAATGTGATATTGGTGA
AGGTAAAGGTATTCATAATATTACAATCATTGATGATGACCTTTCGTTCACAGCAATCAA
TAAGTTCCAATATCTCGATGAAAAAACAAAAATCTCAAAAATATCGAGAGGTGCAATTGC
TGGTATTGTTGTTGGTTGTGNTGTTGCTGTTTCATTAATTGGTTCTATTGCTTTTTATTA
TCATCACAAAAATAAAAAGGTTAATCTTTTCTTCTAAAAACTAAAATAAAATTTAACCAT
TANGTTTTTT
Length of connected seq. 1260
Full length Seq ID -
Full length Seq. -
Length of full length seq. -