>VHD644 (VHD644Q) /CSM/VH/VHD6-B/VHD644Q.Seq.d/
AATCTCTACCATACCTTTCAATCGTTTATTCATCCCTTATCAAAAACACACACACACACA
TATATATATAAAATTAATTTATTACTTTTTATTTGTCATAAAAAAAAAAXXXXXXXXXXT
TTCATTTTCATCNCCGATAGAAAGAAAGAGTTAATCATTNCAGCAGGTGGTGAAAATATT
TCACCAACCTTGATNGAAGGTTTCATTCGTCAAATCATTGGTGTTGAACAAGCCGTAGTA
ATTGGTGATCGTCAAAAATATTTAGTTGCTTTGGTCACTGTCAATGCTGATTTATTCAAG
TTATTACCAGGTCAAGGTTACACTCATCCATTACCAAAATCAATGGAAGAAGCTTCAACA
GATAAACATTTCATTGCCTATATTGATTCTCAAATGAAAGATATTAATTCAAAACTTCCA
AATGTTTCAACAATTAAAAAAGTTAAAATTTTACCAGTTGAATTCCAAGAAACTGGTGAA
ACTTCTGAATTAACTCCAACTAAAAAATTAT

NLYHTFQSFIHPLSKTHTHTYIYKINLLLFICHKKK---

---FIFIXDRKKELIIXAGGENISPTLXEGFIRQIIGVEQAVVIGDRQKYLVALVTVNAD
LFKLLPGQGYTHPLPKSMEEASTDKHFIAYIDSQMKDINSKLPNVSTIKKVKILPVEFQE
TGETSELTPTKKL

Frame A:
NLYHTFQSFIHPLSKTHTHTYIYKINLLLFICHKKK---

---fhfhxr*kervnhxsrw*kyftnldxrfhssnhwc*tsrsnw*sskifscfghcqc*
fiqvitrsrlhssitkingrsfnr*tfhcly*fsnery*fktskcfnn*ks*nfts*ipr
nw*nf*insn*ki

Frame B:
istipfnrlfipyqkhththiyikliyyflfvikkk---

---FIFIXDRKKELIIXAGGENISPTLXEGFIRQIIGVEQAVVIGDRQKYLVALVTVNAD
LFKLLPGQGYTHPLPKSMEEASTDKHFIAYIDSQMKDINSKLPNVSTIKKVKILPVEFQE
TGETSELTPTKKL

Frame C:
slpylsivyssliknththiyi*n*fitfyls*kk---

---sfsspierks*sxqqvvkifhqp*xkvsfvkslvlnkp**lvivkni*llwslsmli
yssyyqvkvtlihyqnqwkklqqinislpililk*kiliqnfqmfqqlkklkfyqlnskk
lvklln*lqlkny

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHD644 (VHD644Q) /CSM/VH/VHD6-B/VHD644Q.Seq.d/                        759   0.0
CHP847 (CHP847Q) /CSM/CH/CHP8-B/CHP847Q.Seq.d/                        759   0.0
VHQ345 (VHQ345Q) /CSM/VH/VHQ3-B/VHQ345Q.Seq.d/                        757   0.0
VHE260 (VHE260Q) /CSM/VH/VHE2-C/VHE260Q.Seq.d/                        757   0.0
VHA335 (VHA335Q) /CSM/VH/VHA3-B/VHA335Q.Seq.d/                        757   0.0
CHR348 (CHR348Q) /CSM/CH/CHR3-B/CHR348Q.Seq.d/                        757   0.0
CHQ796 (CHQ796Q) /CSM/CH/CHQ7-D/CHQ796Q.Seq.d/                        757   0.0
CHN456 (CHN456Q) /CSM/CH/CHN4-C/CHN456Q.Seq.d/                        757   0.0
CHF547 (CHF547Q) /CSM/CH/CHF5-B/CHF547Q.Seq.d/                        757   0.0
AHM812 (AHM812Q) /CSM/AH/AHM8-A/AHM812Q.Seq.d/                        757   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AM458057|AM458057.2 Vitis vinifera contig VV78X226249.7, whole genome shotgun sequence.    56   0.001  1
BX548045|BX548045.6 Zebrafish DNA sequence from clone DKEY-224A6 in linkage group 17.    46   0.002  2
BX927226|BX927226.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone  DKEY-6J23.    46   0.002  2
DV182098|DV182098.1 EST-161-5 Young leaves inoculated with powdery mildew pathogen (Uncinula necator) cDNA library of Chinese wild grape Vitis pseudoreticulata cDNA 5', mRNA sequence.    52   0.016  1
EJ970719|EJ970719.1 1093022079894 Global-Ocean-Sampling_GS-30-02-01-1P0-1P3KB marine metagenome genomic clone 1061002920862 5', genomic survey sequence.    52   0.016  1
EJ277446|EJ277446.1 1095366029905 Global-Ocean-Sampling_GS-27-01-01-1P8-2P0KB marine metagenome genomic clone 1061005468816 5', genomic survey sequence.    52   0.016  1
CT518011|CT518011.1 A BAC library has been constructed from cultivar Cabernet Sauvignon  using two different restriction enzymes : HindIII (clone prefix :  VCS1H) and EcoRI (clone prefix : VCS1E).    50   0.062  1
CT497858|CT497858.1 A BAC library has been constructed from cultivar Cabernet Sauvignon  using two different restriction enzymes : HindIII (clone prefix :  VCS1H) and EcoRI (clone prefix : VCS1E).    50   0.062  1
AM488596|AM488596.2 Vitis vinifera contig VV78X275768.5, whole genome shotgun sequence.    50   0.062  1
AM464424|AM464424.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X163662.5, clone ENTAV 115.    50   0.062  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AP011115_849(AP011115|pid:none) Rhodococcus opacus B4 DNA, compl...    89   8e-17
AE000516_2307(AE000516|pid:none) Mycobacterium tuberculosis CDC1...    87   2e-16
AM408590_2207(AM408590|pid:none) Mycobacterium bovis BCG Pasteur...    87   2e-16
BX842579_25(BX842579|pid:none) Mycobacterium tuberculosis H37Rv ...    87   2e-16
CP000480_4107(CP000480|pid:none) Mycobacterium smegmatis str. MC...    87   2e-16
AL022602_30(AL022602|pid:none) Mycobacterium leprae cosmid B268.       86   5e-16
A87020(A87020) probable long-chain-fatty-acid-CoA ligase [import...    86   5e-16
CP000656_2943(CP000656|pid:none) Mycobacterium gilvum PYR-GCK, c...    86   5e-16
CP000580_3258(CP000580|pid:none) Mycobacterium sp. JLS, complete...    82   8e-15
CP000431_5975(CP000431|pid:none) Rhodococcus jostii RHA1, comple...    82   1e-14

 psg: 0.82  gvh: 0.39  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.33  mip: 0.00
 nuc: 0.02  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 36.0 %: nuclear
	 24.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for VHD644 is cyt

>VHD644F.Seq
AATCTCTACCATACCTTTCAATCGTTTATTCATCCCTTATCAAAAACACACACACACACA
TATATATATAAAATTAATTTATTACTTTTTATTTGTCATAAAAAAAAAANNNNNNNNNN

>VHD644Z.Seq
NNNNNNNNNNTTTCATTTTCATCNCCGATAGAAAGAAAGAGTTAATCATTNCAGCAGGTG
GTGAAAATATTTCACCAACCTTGATNGAAGGTTTCATTCGTCAAATCATTGGTGTTGAAC
AAGCCGTAGTAATTGGTGATCGTCAAAAATATTTAGTTGCTTTGGTCACTGTCAATGCTG
ATTTATTCAAGTTATTACCAGGTCAAGGTTACACTCATCCATTACCAAAATCAATGGAAG
AAGCTTCAACAGATAAACATTTCATTGCCTATATTGATTCTCAAATGAAAGATATTAATT
CAAAACTTCCAAATGTTTCAACAATTAAAAAAGTTAAAATTTTACCAGTTGAATTCCAAG
AAACTGGTGAAACTTCTGAATTAACTCCAACTAAAAAATTAT

>VHD644P.Seq
AATCTCTACCATACCTTTCAATCGTTTATTCATCCCTTATCAAAAACACACACACACACA
TATATATATAAAATTAATTTATTACTTTTTATTTGTCATAAAAAAAAAA----------T
TTCATTTTCATCNCCGATAGAAAGAAAGAGTTAATCATTNCAGCAGGTGGTGAAAATATT
TCACCAACCTTGATNGAAGGTTTCATTCGTCAAATCATTGGTGTTGAACAAGCCGTAGTA
ATTGGTGATCGTCAAAAATATTTAGTTGCTTTGGTCACTGTCAATGCTGATTTATTCAAG
TTATTACCAGGTCAAGGTTACACTCATCCATTACCAAAATCAATGGAAGAAGCTTCAACA
GATAAACATTTCATTGCCTATATTGATTCTCAAATGAAAGATATTAATTCAAAACTTCCA
AATGTTTCAACAATTAAAAAAGTTAAAATTTTACCAGTTGAATTCCAAGAAACTGGTGAA
ACTTCTGAATTAACTCCAACTAAAAAATTAT