VHD628
Library VH
(Link to library)
Clone ID VHD628
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13028-1
Original site URL
Representative seq. ID VHD628P
(Link to Original site)
Representative DNA sequence
>VHD628 (VHD628Q) /CSM/VH/VHD6-B/VHD628Q.Seq.d/
AGCAAATCCAAAAGAATGACAACTACTAATTGGAGTTTAAAAGTTGATAGAGGCAGACAA
ACTTGGGAGTACTCTCAAGAGAAAAAAGAAGCAACAGATGTTGATATTCATTTATTAAGA
TTAAAAGAACCAGGAACACATTGTCCAGAAGGATGTGATTTAAATAGAGCAAAAACACCA
CAACAAGCAATTAAAAAAGCATTCCAATATTTCTCAAAAGTTCAAACTGAGGATGGTCAT
TGGGCAGGTGATTATGGTGGTCCAATGTTTTTATTACCAGGTTTAGTCATTACATGTTAT
GTAACAGGTTATCAATTACCAGAATCAACTCAAAGAGAAATCATTAGATATTTATTCAAT
AGACAAAATCCAGTTGATGGTGGTTGGGGTCTTCACATTGAGGCACATTCAGATATTTTT
GGAACAACATTACAATATGTTTCATTAAGATTATTAGGAGTACCAGCAGATCATCCATCA
GTAGTAAAAGCAAGAACATTTTTATTACAAAATGGTGGTGCAACAGGTATTCCATCATGG
GGTAAATTTTGGTTAGCAACATTAAATGCTTATGATTGGAATGGXXXXXXXXXXAATATT
ATGATCGATTATTCCTATGTCGAATGTAGTGCAGCATGTATTCAAGCAATGTCAGCATTC
CGTAAACATGCACCAAATCATCCACGTATTAAAGAAATCAATCGTTCAATTGCTCGTGGT
GTTAAATTCATTAAATCCATTCAAAGACAAGATGGTAGTTGGTTAGGTAGTTGGGGTATT
TGTTTTACCTATGGTACTTGGTTTGGTATTGAAGGTTTGGTAGCCTCTGGTGAACCATTG
ACTTCGCCATCAATCGTTAAAGCTTGCAAATTCCTTGCCTCAAAACAAAGAGCAGATGGT
GGTTGGGGCGAATCTTTCAAATCAAATGTTACCAAAGAATACGTTCAACATGAAACTTCA
CAAGTTGTAAACACTGGTTGGGCTTTACTCTCACTCATGTCTGCTAAATATCCAGATAGA
GAATGCATTGAAAGAGGTATTAAATTCCTCATACAAAGACAATATCCAAATGGTGATTTC
CCACAAGAATCTATTATTGGTGTTTTCAATTTCAATTGTATGATCAGTTATTCAAATTAT
AAAAATATTTTCCCATTATGGGCTTTATCTAGATA
sequence update 2002.10.25
Translated Amino Acid sequence
SKSKRMTTTNWSLKVDRGRQTWEYSQEKKEATDVDIHLLRLKEPGTHCPEGCDLNRAKTP
QQAIKKAFQYFSKVQTEDGHWAGDYGGPMFLLPGLVITCYVTGYQLPESTQREIIRYLFN
RQNPVDGGWGLHIEAHSDIFGTTLQYVSLRLLGVPADHPSVVKARTFLLQNGGATGIPSW
GKFWLATLNAYDWN---

---NIMIDYSYVECSAACIQAMSAFRKHAPNHPRIKEINRSIARGVKFIKSIQRQDGSWL
GSWGICFTYGTWFGIEGLVASGEPLTSPSIVKACKFLASKQRADGGWGESFKSNVTKEYV
QHETSQVVNTGWALLSLMSAKYPDRECIERGIKFLIQRQYPNGDFPQESIIGVFNFNCMI
SYSNYKNIFPLWALSR


Translated Amino Acid sequence (All Frames)
Frame A:
SKSKRMTTTNWSLKVDRGRQTWEYSQEKKEATDVDIHLLRLKEPGTHCPEGCDLNRAKTP
QQAIKKAFQYFSKVQTEDGHWAGDYGGPMFLLPGLVITCYVTGYQLPESTQREIIRYLFN
RQNPVDGGWGLHIEAHSDIFGTTLQYVSLRLLGVPADHPSVVKARTFLLQNGGATGIPSW
GKFWLATLNAYDWN---

---NIMIDYSYVECSAACIQAMSAFRKHAPNHPRIKEINRSIARGVKFIKSIQRQDGSWL
GSWGICFTYGTWFGIEGLVASGEPLTSPSIVKACKFLASKQRADGGWGESFKSNVTKEYV
QHETSQVVNTGWALLSLMSAKYPDRECIERGIKFLIQRQYPNGDFPQESIIGVFNFNCMI
SYSNYKNIFPLWALSR

Frame B:
anpke*qlligv*klieadklgstlkrkkkqqmlifiy*d*knqehivqkdvi*ieqkhh
nkqlkkhsnisqkfklrmvigqvimvvqcfyyqv*slhvm*qvinyqnqlkeksldiysi
dkiqlmvvgvftlrhiqifleqhynmfh*dy*eyqqiihq**kqehfyykmvvqqvfhhg
vnfg*qh*mlmigm---

---il*siipmsnvvqhvfkqcqhsvnmhqiihvlkksivqllvvlnslnpfkdkmvvg*
vvgvfvlpmvlglvlkvw*plvnh*lrhqslklanslpqnkeqmvvganlsnqmlpkntf
nmklhkl*tlvglyshscllniqienalkevlnssykdniqmvishknlllvfsisiv*s
viqiikifshyglyld

Frame C:
qiqkndny*lefks**rqtnlgvlsrekrsnrc*ysfikikrtrntlsrrm*fk*skntt
tsn*ksipiflkssn*gwslgr*lwwsnvfitrfshymlcnrlsitrinskrnh*ifiq*
tkss*wwlgssh*gtfryfwnniticfikiirstsrssissksknifitkwwcnrysimg
*ilvsnikcl*lew---

---yydrlflcrm*csmyssnvsip*tctkssty*rnqsfncswc*ih*ihsktrw*lvr
*lgylfylwylvwy*rfgslw*tidfainr*slqipclktksrwwlgrifqikcyqrirs
t*nftsckhwlgftlthvc*isr*rmh*kry*iphtktiskw*fptriyywcfqfqlydq
lfkl*kyfpimgfi*i

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHQ353 (VHQ353Q) /CSM/VH/VHQ3-C/VHQ353Q.Seq.d/ 1158 0.0
VHQ132 (VHQ132Q) /CSM/VH/VHQ1-B/VHQ132Q.Seq.d/ 1158 0.0
VHP391 (VHP391Q) /CSM/VH/VHP3-D/VHP391Q.Seq.d/ 1158 0.0
VHP346 (VHP346Q) /CSM/VH/VHP3-B/VHP346Q.Seq.d/ 1158 0.0
VHP151 (VHP151Q) /CSM/VH/VHP1-C/VHP151Q.Seq.d/ 1158 0.0
VHM690 (VHM690Q) /CSM/VH/VHM6-D/VHM690Q.Seq.d/ 1158 0.0
VHM553 (VHM553Q) /CSM/VH/VHM5-C/VHM553Q.Seq.d/ 1158 0.0
VHM391 (VHM391Q) /CSM/VH/VHM3-D/VHM391Q.Seq.d/ 1158 0.0
VHL721 (VHL721Q) /CSM/VH/VHL7-A/VHL721Q.Seq.d/ 1158 0.0
VHL446 (VHL446Q) /CSM/VH/VHL4-B/VHL446Q.Seq.d/ 1158 0.0

own update 2004. 8. 2
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF159949|AF159949.1 Dictyostelium discoideum cycloartenol synthase (CAS1) mRNA, partial cds. 1152 0.0 1
EC757725|EC757725.1 PPE00000938 Agencourt Biosciences Agen-0020 Non-normalized library cloned into Not I - Eco RV sites of pAGEN-1 Physarum polycephalum cDNA, mRNA sequence. 58 8e-10 3
AY520819|AY520819.1 Centella asiatica cycloartenol synthase (OSCCCS) mRNA, complete cds. 60 4e-08 3
AB009029|AB009029.1 Panax ginseng OSCPNX1 mRNA for Cycloartenol Synthase, complete cds. 46 7e-06 3
DQ268870|DQ268870.1 Ricinus communis cycloartenol synthase mRNA, complete cds. 44 4e-05 2
EB329833|EB329833.1 CNSN01-F-109865-501 Normalized CNS library (juvenile 1) Aplysia californica cDNA clone CNSN01-F-109865 5', mRNA sequence. 58 6e-04 1
EB303482|EB303482.1 CNSN01-F-062558-501 Normalized CNS library (juvenile 1) Aplysia californica cDNA clone CNSN01-F-062558 5', mRNA sequence. 58 6e-04 1
AB055509|AB055509.1 Betula platyphylla CASBPX1 mRNA for cycloartenol synthase, complete cds. 38 0.001 4
CF604686|CF604686.1 RADIC01_000182 Grape Root pSPORT1 Library Vitis vinifera cDNA 5', mRNA sequence. 56 0.002 1
BY180927|BY180927.1 Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630043C20, 5' end partial sequence. 56 0.002 1
dna update 2007. 6.23
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q55D85) RecName: Full=Cycloartenol synthase; EC=5.4.99... 407 e-112
AB009029_1(AB009029|pid:none) Panax ginseng OSCPNX1 mRNA for Cyc... 225 3e-57
CP001141_109(CP001141|pid:none) Phaeodactylum tricornutum CCAP 1... 224 5e-57
A49398(A49398)cycloartenol synthase (EC 5.4.99.8) - Arabidopsis ... 224 5e-57
AK312489_1(AK312489|pid:none) Homo sapiens cDNA, FLJ92849, highl... 223 8e-57
BC035638_1(BC035638|pid:none) Homo sapiens lanosterol synthase (... 223 8e-57
AK296313_1(AK296313|pid:none) Homo sapiens cDNA FLJ58192 complet... 223 8e-57
BC134214_1(BC134214|pid:none) Danio rerio lanosterol synthase (2... 223 1e-56
BX255930_10(BX255930|pid:none) Zebrafish DNA sequence from clone... 223 1e-56
GN121451_1(GN121451|pid:none) Sequence 4347 from Patent WO200903... 222 2e-56
protein update 2009. 6.29
PSORT

psg: 0.83 gvh: 0.44 alm: 0.38 top: 0.53 tms: 0.00 mit: 0.40 mip: 0.02
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: mitochondrial
28.0 %: cytoplasmic
24.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: peroxisomal

>> prediction for VHD628 is mit

5' end seq. ID VHD628F
5' end seq.
>VHD628F.Seq
AGCAAATCCAAAAGAATGACAACTACTAATTGGAGTTTAAAAGTTGATAGAGGCAGACAA
ACTTGGGAGTACTCTCAAGAGAAAAAAGAAGCAACAGATGTTGATATTCATTTATTAAGA
TTAAAAGAACCAGGAACACATTGTCCAGAAGGATGTGATTTAAATAGAGCAAAAACACCA
CAACAAGCAATTAAAAAAGCATTCCAATATTTCTCAAAAGTTCAAACTGAGGATGGTCAT
TGGGCAGGTGATTATGGTGGTCCAATGTTTTTATTACCAGGTTTAGTCATTACATGTTAT
GTAACAGGTTATCAATTACCAGAATCAACTCAAAGAGAAATCATTAGATATTTATTCAAT
AGACAAAATCCAGTTGATGGTGGTTGGGGTCTTCACATTGAGGCACATTCAGATATTTTT
GGAACAACATTACAATATGTTTCATTAAGATTATTAGGAGTACCAGCAGATCATCCATCA
GTAGTAAAAGCAAGAACATTTTTATTACAAAATGGTGGTGCAACAGGTATTCCATCATGG
GGTAAATTTTGGTTAGCAACATTAAATGCTTATGATTGGAATGGNNNNNNNNNN
Length of 5' end seq. 594
3' end seq. ID VHD628Z
3' end seq.
>VHD628Z.Seq
NNNNNNNNNNAATATTATGATCGATTATTCCTATGTCGAATGTAGTGCAGCATGTATTCA
AGCAATGTCAGCATTCCGTAAACATGCACCAAATCATCCACGTATTAAAGAAATCAATCG
TTCAATTGCTCGTGGTGTTAAATTCATTAAATCCATTCAAAGACAAGATGGTAGTTGGTT
AGGTAGTTGGGGTATTTGTTTTACCTATGGTACTTGGTTTGGTATTGAAGGTTTGGTAGC
CTCTGGTGAACCATTGACTTCGCCATCAATCGTTAAAGCTTGCAAATTCCTTGCCTCAAA
ACAAAGAGCAGATGGTGGTTGGGGCGAATCTTTCAAATCAAATGTTACCAAAGAATACGT
TCAACATGAAACTTCACAAGTTGTAAACACTGGTTGGGCTTTACTCTCACTCATGTCTGC
TAAATATCCAGATAGAGAATGCATTGAAAGAGGTATTAAATTCCTCATACAAAGACAATA
TCCAAATGGTGATTTCCCACAAGAATCTATTATTGGTGTTTTCAATTTCAATTGTATGAT
CAGTTATTCAAATTATAAAAATATTTTCCCATTATGGGCTTTATCTAGATA
Length of 3' end seq. 591
Connected seq. ID VHD628P
Connected seq.
>VHD628P.Seq
AGCAAATCCAAAAGAATGACAACTACTAATTGGAGTTTAAAAGTTGATAGAGGCAGACAA
ACTTGGGAGTACTCTCAAGAGAAAAAAGAAGCAACAGATGTTGATATTCATTTATTAAGA
TTAAAAGAACCAGGAACACATTGTCCAGAAGGATGTGATTTAAATAGAGCAAAAACACCA
CAACAAGCAATTAAAAAAGCATTCCAATATTTCTCAAAAGTTCAAACTGAGGATGGTCAT
TGGGCAGGTGATTATGGTGGTCCAATGTTTTTATTACCAGGTTTAGTCATTACATGTTAT
GTAACAGGTTATCAATTACCAGAATCAACTCAAAGAGAAATCATTAGATATTTATTCAAT
AGACAAAATCCAGTTGATGGTGGTTGGGGTCTTCACATTGAGGCACATTCAGATATTTTT
GGAACAACATTACAATATGTTTCATTAAGATTATTAGGAGTACCAGCAGATCATCCATCA
GTAGTAAAAGCAAGAACATTTTTATTACAAAATGGTGGTGCAACAGGTATTCCATCATGG
GGTAAATTTTGGTTAGCAACATTAAATGCTTATGATTGGAATGG----------AATATT
ATGATCGATTATTCCTATGTCGAATGTAGTGCAGCATGTATTCAAGCAATGTCAGCATTC
CGTAAACATGCACCAAATCATCCACGTATTAAAGAAATCAATCGTTCAATTGCTCGTGGT
GTTAAATTCATTAAATCCATTCAAAGACAAGATGGTAGTTGGTTAGGTAGTTGGGGTATT
TGTTTTACCTATGGTACTTGGTTTGGTATTGAAGGTTTGGTAGCCTCTGGTGAACCATTG
ACTTCGCCATCAATCGTTAAAGCTTGCAAATTCCTTGCCTCAAAACAAAGAGCAGATGGT
GGTTGGGGCGAATCTTTCAAATCAAATGTTACCAAAGAATACGTTCAACATGAAACTTCA
CAAGTTGTAAACACTGGTTGGGCTTTACTCTCACTCATGTCTGCTAAATATCCAGATAGA
GAATGCATTGAAAGAGGTATTAAATTCCTCATACAAAGACAATATCCAAATGGTGATTTC
CCACAAGAATCTATTATTGGTGTTTTCAATTTCAATTGTATGATCAGTTATTCAAATTAT
AAAAATATTTTCCCATTATGGGCTTTATCTAGATA
Length of connected seq. 1165
Full length Seq ID -
Full length Seq. -
Length of full length seq. -