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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHD604
Library VH
(Link to library)
Clone ID VHD604
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11371-1
Original site URL
Representative seq. ID VHD604P
(Link to Original site)
Representative DNA sequence 
>VHD604 (VHD604Q) /CSM/VH/VHD6-A/VHD604Q.Seq.d/
AGTTCCCCTTTTCTCAATCATCAACTAAATCAATAATAAACAATTAATCAAAAATGACAA
TCTTTGATAGCGACGAAGAAGAGTTAGTTACTACTCTCAGTGATTTCGAACCACCAGTTC
AAATTGATACTTNATTCAATAAATTTATTGTAGTTGATAATATTCCAGTTGCACCAGAGG
CAAAACACGAGAAATTGAAATCTATTTTAGTTAAAATCTATCAAAATAGACCAGGTGCTG
AAGTTGTTGGTATTCATTTAGCATTAGATGCTCAAAGAAATACTAAAGGTTTTGCATTTA
TTGAATATTCAAAAAAAGAATCAGCAATTGATGCAGCAACTTCATTAAATAATTATCCAT
TAGATAAATCACATACATTAAAAGTTAATTTATTAGATGATTTTAGCAAATTTGCCAATT
TTGAAGAAACTTATAAACCACCAACTAGAGAAGATTTTAAACCAAAACCAAATTACAATC
AATGGTTATCAGATCCAAAAGCATTGAAAGGTTATGACCAATTTGTAACACGTTATGGTG
ATTATACAGATATTTGTTGGAATGAGATGCATGTTGGTAAAXXXXXXXXXXCTCATTAGT
AAATTAGAGAATCGTAAATTGAATACCATCTTTTGGTCACCACGTGGTACTTTGGTATTA
TTGGCCAATTTGGGTGACACTGGTGAATTGGAATTCTACAACACTCAAGACTGTGAATCC
TATGGCACTCAAGAACATCTCCAATGTACTGGTGTCGATTGGAATCCATCTGGTCGTTAT
GTTACCACCTTTGTTAGTCATTGGAAGGTTCAAACCGATACTGGTTTCAACATTTGGTCA
TTCAATGGTGATCTCGTCTACTCTGTACTCAAGGATCGTTTCTTCCAATTCAATTGGCGT
CCAAGACCAAAATTCATGCTCACCAATAAAGAAATCAATCAAATCAAACAAAACATCAAA
AAATATCAAGAGAAATTCGATAAACAAGATGAAGATGATAATAAAGCCATTCAACATATT
GAACAAACTCGTCTTGATAATTTAATGAAAGAATTTTTATCTTTCCTTCAAAAAGGTGAA
CAAGAATATCAAGCACTCGAACCAACTAGAAAACAACTTGGTTCTTATGAAGATATTGAT
CCAAATGATATCTATGAATCAATNAAACAATGAAGAACTTATNATATTAAAACTATGTTT
TAAAGAAAATAAATTAAATTTAAAATAAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
fpfsqsstksiinn*SKMTIFDSDEEELVTTLSDFEPPVQIDTXFNKFIVVDNIPVAPEA
KHEKLKSILVKIYQNRPGAEVVGIHLALDAQRNTKGFAFIEYSKKESAIDAATSLNNYPL
DKSHTLKVNLLDDFSKFANFEETYKPPTREDFKPKPNYNQWLSDPKALKGYDQFVTRYGD
YTDICWNEMHVGK---

---LISKLENRKLNTIFWSPRGTLVLLANLGDTGELEFYNTQDCESYGTQEHLQCTGVDW
NPSGRYVTTFVSHWKVQTDTGFNIWSFNGDLVYSVLKDRFFQFNWRPRPKFMLTNKEINQ
IKQNIKKYQEKFDKQDEDDNKAIQHIEQTRLDNLMKEFLSFLQKGEQEYQALEPTRKQLG
SYEDIDPNDIYESXKQ*rtyxiktmf*rk*ikfkik
Translated Amino Acid sequence (All Frames) 
Frame A:
sspflnhqlnq**tinqk*qsliatkks*lllsvisnhqfklilxsinll*liifqlhqr
qntrn*nlf*lksikidqvlkllvfi*h*mlkeilkvlhllniqkknqqlmqqlh*iiih
*inhih*kliy*milanlpilkklinhqlekilnqnqitingyqiqkh*kvmtnl*hvmv
iiqifvgmrcmlv---

---LISKLENRKLNTIFWSPRGTLVLLANLGDTGELEFYNTQDCESYGTQEHLQCTGVDW
NPSGRYVTTFVSHWKVQTDTGFNIWSFNGDLVYSVLKDRFFQFNWRPRPKFMLTNKEINQ
IKQNIKKYQEKFDKQDEDDNKAIQHIEQTRLDNLMKEFLSFLQKGEQEYQALEPTRKQLG
SYEDIDPNDIYESXKQ*rtyxiktmf*rk*ikfkik

Frame B:
vplfsiin*innkqlikndnl**rrrrvsyysq*frttssn*yxiq*iycs**yssctrg
ktreieiyfs*nlsk*trc*scwysfsircskky*rfciy*ifkkrisn*csnfik*lsi
r*ityiks*fir*f*qicqf*rnl*ttn*rrf*tktklqsmvirsksierl*picntlw*
lyrylle*dacw*---

---slvn*rivn*ipsfghhvvlwyywpiwvtlvnwnsttlktvnpmalknisnvlvsig
ihlvvmlppllvigrfkpilvstfghsmvisstlysrivssnsigvqdqnscspikksik
snktsknikrnsinkmkmiikpfnilnklvlii**knfylsfkkvnknikhsnqlennlv
lmkiliqmismnqxnneelxilklcfkenklnlk*

Frame C:
fpfsqsstksiinn*SKMTIFDSDEEELVTTLSDFEPPVQIDTXFNKFIVVDNIPVAPEA
KHEKLKSILVKIYQNRPGAEVVGIHLALDAQRNTKGFAFIEYSKKESAIDAATSLNNYPL
DKSHTLKVNLLDDFSKFANFEETYKPPTREDFKPKPNYNQWLSDPKALKGYDQFVTRYGD
YTDICWNEMHVGK---

---h**ires*ieyhllvttwyfgiigqfg*hw*igilqhsrl*ilwhsrtspmywcrle
siwslcyhlc*slegsnrywfqhlviqw*srllctqgsflpiqlasktkihahq*rnqsn
qtkhqkisreir*tr*r***shsty*tnss**fnerififpskr*trisstrtn*kttwf
l*ry*sk*yl*inxtmknlxy*nyvlkkin*i*nk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHD604 (VHD604Q) /CSM/VH/VHD6-A/VHD604Q.Seq.d/                       1725   0.0
VHE503 (VHE503Q) /CSM/VH/VHE5-A/VHE503Q.Seq.d/                       1104   0.0
SFJ772 (SFJ772Q) /CSM/SF/SFJ7-C/SFJ772Q.Seq.d/                       1104   0.0
CHE725 (CHE725Q) /CSM/CH/CHE7-B/CHE725Q.Seq.d/                       1104   0.0
SFE596 (SFE596Q) /CSM/SF/SFE5-D/SFE596Q.Seq.d/                       1098   0.0
VFG196 (VFG196Q) /CSM/VF/VFG1-D/VFG196Q.Seq.d/                       1094   0.0
VFK194 (VFK194Q) /CSM/VF/VFK1-D/VFK194Q.Seq.d/                       1068   0.0
VHG856 (VHG856Q) /CSM/VH/VHG8-C/VHG856Q.Seq.d/                       1059   0.0
SLC263 (SLC263Q) /CSM/SL/SLC2-C/SLC263Q.Seq.d/                       1057   0.0
VHF256 (VHF256Q) /CSM/VH/VHF2-C/VHF256Q.Seq.d/                       1053   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

DW105085|DW105085.1 CLRX2899.b1_E06.ab1 CLR(XYZ) lettuce serriola Lactuca serriola cDNAclone CLRX2899, mRNA sequence.    54   0.010  1
DW104649|DW104649.1 CLRX2456.b1_P13.ab1 CLR(XYZ) lettuce serriola Lactuca serriola cDNA clone CLRX2456, mRNA sequence.    54   0.010  1
EH767656|EH767656.1 CNSM1411.b1_E18.ab1 CNS(LMS) yellow starthistle Centaurea solstitialis cDNA clone CNSM1411, mRNA sequence.    54   0.010  1
EH763101|EH763101.1 CNSL9103.b1_M20.ab1 CNS(LMS) yellow starthistle Centaurea solstitialis cDNA clone CNSL9103, mRNA sequence.    54   0.010  1
EH727277|EH727277.1 CNMM13714.b1_C22.ab1 CNM(LMS) spotted knapweed Centaurea maculosa cDNA clone CNMM13714, mRNA sequence.    54   0.010  1
DY984193|DY984193.1 CLSS6772.b1_G14.ab1 CLS(LMS) lettuce sativa Lactuca sativa cDNA clone CLSS6772, mRNA sequence.    54   0.010  1
DY968175|DY968175.1 CLSM19261.b1_I15.ab1 CLS(LMS) lettuce sativa Lactuca sativa cDNA clone CLSM19261, mRNA sequence.    54   0.010  1
BX998037|BX998037.1 Reverse strand read from insert in 3'HPRT insertion targeting and chromosome engineering clone MHPP366d08.    48   0.61   1
AC192179|AC192179.4 Pan troglodytes BAC clone CH251-347B7 from chromosome 7, complete sequence.    42   1.3    7
CJ461626|CJ461626.1 Macaca fascicularis mRNA, clone: QmoA-14582, 5' end, expressed in medulla oblongata.    46   2.4    1
dna update 2007. 6.23
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF660343_1(EF660343|pid:none) Artemisia annua eukaryotic transla...   132   3e-29
(Q1HDZ5) RecName: Full=Eukaryotic translation initiation factor ...   128   5e-28
BT064159_1(BT064159|pid:none) Zea mays full-length cDNA clone ZM...   126   2e-27
BT002393_1(BT002393|pid:none) Arabidopsis thaliana eukaryotic tr...   122   3e-26
AC137830_32(AC137830|pid:none) Medicago truncatula clone mth2-33...   120   8e-26
(Q9C5Z1) RecName: Full=Eukaryotic translation initiation factor ...   120   1e-25
AF255680_1(AF255680|pid:none) Arabidopsis thaliana eIF3b mRNA, c...   113   1e-23
CR954215_188(CR954215|pid:none) Ostreococcus tauri strain OTTH05...   111   6e-23
BC001173_1(BC001173|pid:none) Homo sapiens eukaryotic translatio...   111   6e-23
BC007175_1(BC007175|pid:none) Mus musculus eukaryotic translatio...   111   6e-23
protein update 2009. 6.29
PSORT 

 psg: 0.75  gvh: 0.36  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.33
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	 20.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for VHD604 is cyt
5' end seq. ID VHD604F
5' end seq. 
>VHD604F.Seq
AGTTCCCCTTTTCTCAATCATCAACTAAATCAATAATAAACAATTAATCAAAAATGACAA
TCTTTGATAGCGACGAAGAAGAGTTAGTTACTACTCTCAGTGATTTCGAACCACCAGTTC
AAATTGATACTTNATTCAATAAATTTATTGTAGTTGATAATATTCCAGTTGCACCAGAGG
CAAAACACGAGAAATTGAAATCTATTTTAGTTAAAATCTATCAAAATAGACCAGGTGCTG
AAGTTGTTGGTATTCATTTAGCATTAGATGCTCAAAGAAATACTAAAGGTTTTGCATTTA
TTGAATATTCAAAAAAAGAATCAGCAATTGATGCAGCAACTTCATTAAATAATTATCCAT
TAGATAAATCACATACATTAAAAGTTAATTTATTAGATGATTTTAGCAAATTTGCCAATT
TTGAAGAAACTTATAAACCACCAACTAGAGAAGATTTTAAACCAAAACCAAATTACAATC
AATGGTTATCAGATCCAAAAGCATTGAAAGGTTATGACCAATTTGTAACACGTTATGGTG
ATTATACAGATATTTGTTGGAATGAGATGCATGTTGGTAAANNNNNNNNNN
Length of 5' end seq. 591
3' end seq. ID VHD604Z
3' end seq. 
>VHD604Z.Seq
NNNNNNNNNNCTCATTAGTAAATTAGAGAATCGTAAATTGAATACCATCTTTTGGTCACC
ACGTGGTACTTTGGTATTATTGGCCAATTTGGGTGACACTGGTGAATTGGAATTCTACAA
CACTCAAGACTGTGAATCCTATGGCACTCAAGAACATCTCCAATGTACTGGTGTCGATTG
GAATCCATCTGGTCGTTATGTTACCACCTTTGTTAGTCATTGGAAGGTTCAAACCGATAC
TGGTTTCAACATTTGGTCATTCAATGGTGATCTCGTCTACTCTGTACTCAAGGATCGTTT
CTTCCAATTCAATTGGCGTCCAAGACCAAAATTCATGCTCACCAATAAAGAAATCAATCA
AATCAAACAAAACATCAAAAAATATCAAGAGAAATTCGATAAACAAGATGAAGATGATAA
TAAAGCCATTCAACATATTGAACAAACTCGTCTTGATAATTTAATGAAAGAATTTTTATC
TTTCCTTCAAAAAGGTGAACAAGAATATCAAGCACTCGAACCAACTAGAAAACAACTTGG
TTCTTATGAAGATATTGATCCAAATGATATCTATGAATCAATNAAACAATGAAGAACTTA
TNATATTAAAACTATGTTTTAAAGAAAATAAATTAAATTTAAAATAAAA
Length of 3' end seq. 649
Connected seq. ID VHD604P
Connected seq. 
>VHD604P.Seq
AGTTCCCCTTTTCTCAATCATCAACTAAATCAATAATAAACAATTAATCAAAAATGACAA
TCTTTGATAGCGACGAAGAAGAGTTAGTTACTACTCTCAGTGATTTCGAACCACCAGTTC
AAATTGATACTTNATTCAATAAATTTATTGTAGTTGATAATATTCCAGTTGCACCAGAGG
CAAAACACGAGAAATTGAAATCTATTTTAGTTAAAATCTATCAAAATAGACCAGGTGCTG
AAGTTGTTGGTATTCATTTAGCATTAGATGCTCAAAGAAATACTAAAGGTTTTGCATTTA
TTGAATATTCAAAAAAAGAATCAGCAATTGATGCAGCAACTTCATTAAATAATTATCCAT
TAGATAAATCACATACATTAAAAGTTAATTTATTAGATGATTTTAGCAAATTTGCCAATT
TTGAAGAAACTTATAAACCACCAACTAGAGAAGATTTTAAACCAAAACCAAATTACAATC
AATGGTTATCAGATCCAAAAGCATTGAAAGGTTATGACCAATTTGTAACACGTTATGGTG
ATTATACAGATATTTGTTGGAATGAGATGCATGTTGGTAAA----------CTCATTAGT
AAATTAGAGAATCGTAAATTGAATACCATCTTTTGGTCACCACGTGGTACTTTGGTATTA
TTGGCCAATTTGGGTGACACTGGTGAATTGGAATTCTACAACACTCAAGACTGTGAATCC
TATGGCACTCAAGAACATCTCCAATGTACTGGTGTCGATTGGAATCCATCTGGTCGTTAT
GTTACCACCTTTGTTAGTCATTGGAAGGTTCAAACCGATACTGGTTTCAACATTTGGTCA
TTCAATGGTGATCTCGTCTACTCTGTACTCAAGGATCGTTTCTTCCAATTCAATTGGCGT
CCAAGACCAAAATTCATGCTCACCAATAAAGAAATCAATCAAATCAAACAAAACATCAAA
AAATATCAAGAGAAATTCGATAAACAAGATGAAGATGATAATAAAGCCATTCAACATATT
GAACAAACTCGTCTTGATAATTTAATGAAAGAATTTTTATCTTTCCTTCAAAAAGGTGAA
CAAGAATATCAAGCACTCGAACCAACTAGAAAACAACTTGGTTCTTATGAAGATATTGAT
CCAAATGATATCTATGAATCAATNAAACAATGAAGAACTTATNATATTAAAACTATGTTT
TAAAGAAAATAAATTAAATTTAAAATAAAA
Length of connected seq. 1220
Full length Seq ID -
Full length Seq. -
Length of full length seq. -