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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHD572
Library VH
(Link to library)
Clone ID VHD572
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16292-1|Contig-U16400-1
Original site URL
Representative seq. ID VHD572P
(Link to Original site)
Representative DNA sequence 
>VHD572 (VHD572Q) /CSM/VH/VHD5-C/VHD572Q.Seq.d/
ATAAATCAATTAAAATAAACACTCACTCGATAGTGTAAAAGAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAANTTTTTTTNAAAAAAAAAXXXXXXXXXXCTCAA
TCATTGGTGCACCTGGTACCATTGCAAACAACGTACCAGGTACAAATATCTCAATTGGAA
GTGATACCTCTTTGAATAACACATTGGATGCATTAGATAAAATCAAACAATCAGCAGTGG
CATCACGTCGTTTATTCGTCGTGGAGGTCATGGGTGCCCATTGTGGTTATTTGGCTGCAA
TGAGTTCTTTAACCTCAGGTGCTGAACGTTCATATATAATGGAAAGAGGTATCACATTGA
ATACACTAACCAAGGATTTGGAAATGTTTGTTGAACGTTTCAAACGTGAACATAGAATTG
GTCTAATTATTAAGAGTGAACTTGCTAGCAACACCTACTCAACTCATTTCATTTATTCAC
TCTTCAAAGAAGAAGGTAAACATTTATTCGATGTCCGTGAATCTATACTCGGTCATTTAC
AACAAGGTGGTACTCCTTCTGCAATTGATCGTATCTTTTCAACTCGTTTAATGAATCATT
ATTATCAATTCTTGGAAAACGATCTCAAAGAACATGGTCATCTTCAAATGAATGGTTGTA
TTGGTTTCATTGATGGTGGTATTCATTACACTCCAATGCAAGAAATGATCGAAGAAATGT
C
sequence update 2002.10.25
Translated Amino Acid sequence 
*in*NKHSLDSVKEKKKKKKKKKKKKKKXFFXKK---

---SIIGAPGTIANNVPGTNISIGSDTSLNNTLDALDKIKQSAVASRRLFVVEVMGAHCG
YLAAMSSLTSGAERSYIMERGITLNTLTKDLEMFVERFKREHRIGLIIKSELASNTYSTH
FIYSLFKEEGKHLFDVRESILGHLQQGGTPSAIDRIFSTRLMNHYYQFLENDLKEHGHLQ
MNGCIGFIDGGIHYTPMQEMIEEM
Translated Amino Acid sequence (All Frames) 
Frame A:
inqlk*tltr*ckrkkkkkkkkkkkkkkkxfxkkk---

---lnhwctwyhckqrtrykylnwk*ylfe*higcir*nqtissgitsfirrgghgcplw
lfgcneffnlrc*tfiyngkryhieytnqgfgnvc*tfqt*t*nwsny*e*tc*qhllns
fhlftlqrrr*tfircp*iytrsfttrwysfcn*sylfnsfnesllsilgkrsqrtwsss
newlywfh*wwyslhsnarndrrnv

Frame B:
*in*NKHSLDSVKEKKKKKKKKKKKKKKXFFXKK---

---SIIGAPGTIANNVPGTNISIGSDTSLNNTLDALDKIKQSAVASRRLFVVEVMGAHCG
YLAAMSSLTSGAERSYIMERGITLNTLTKDLEMFVERFKREHRIGLIIKSELASNTYSTH
FIYSLFKEEGKHLFDVRESILGHLQQGGTPSAIDRIFSTRLMNHYYQFLENDLKEHGHLQ
MNGCIGFIDGGIHYTPMQEMIEEM

Frame C:
ksikinthsiv*kkkkkkkkkkkkkkkkxffxkk---

---qslvhlvplqttyqvqisqlevipl*ithwmh*iksnnqqwhhvvysswrswvpivv
iwlq*vl*pqvlnvhi*wkevsh*ih*priwkcllnvsnvnielv*llrvnllatptqli
sfihsskkkvniysmsvnlysviynkvvlllqlivsfqlv**iiiinswktisknmvifk
*mvvlvslmvvfitlqckk*skkc
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHD572 (VHD572Q) /CSM/VH/VHD5-C/VHD572Q.Seq.d/                       1201   0.0
SHD265 (SHD265Q) /CSM/SH/SHD2-C/SHD265Q.Seq.d/                       1088   0.0
SHA235 (SHA235Q) /CSM/SH/SHA2-B/SHA235Q.Seq.d/                       1084   0.0
VHO736 (VHO736Q) /CSM/VH/VHO7-B/VHO736Q.Seq.d/                       1080   0.0
VHB407 (VHB407Q) /CSM/VH/VHB4-A/VHB407Q.Seq.d/                       1078   0.0
CHL203 (CHL203Q) /CSM/CH/CHL2-A/CHL203Q.Seq.d/                       1078   0.0
VHK293 (VHK293Q) /CSM/VH/VHK2-D/VHK293Q.Seq.d/                       1076   0.0
VHI735 (VHI735Q) /CSM/VH/VHI7-B/VHI735Q.Seq.d/                       1076   0.0
VHI548 (VHI548Q) /CSM/VH/VHI5-B/VHI548Q.Seq.d/                       1076   0.0
VHD226 (VHD226Q) /CSM/VH/VHD2-B/VHD226Q.Seq.d/                       1076   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X94340|X94340.1 D.discoideum mRNA for 6-phosphofructo-1-kinase.  1201   0.0    1
X89039|X89039.1 D.discoideum mRNA for 6-phosphofructo-1-kinase.  1201   0.0    1
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.  1201   0.0    1
AJ430522|AJ430522.1 Dictyostelium discoideum partial pfk gene for ATP:D-fructose  6-phosphate 1-phosphofructokinase, exon 1.    82   3e-11  1
DX414156|DX414156.1 SOYC248TH LargeInsertSoybeanGenLibBuild4 Glycine max genomic clone H12A17:Build4MTP4H23, genomic survey sequence.    48   0.35   1
AC198161|AC198161.3 Macaca mulatta chromosome 18 clone CH250-178F7, WORKING DRAFT SEQUENCE, 2 unordered pieces.    38   1.1    4
CE635221|CE635221.1 tigr-gss-dog-17000366743799 Dog Library Canis familiaris genomic, genomic survey sequence.    46   1.4    1
BZ298846|BZ298846.1 CG4616.f1 Candida glabrata Random Genomic Library Candida glabrata genomic clone CG4616, DNA sequence.    46   1.4    1
BZ297417|BZ297417.1 CG3420.r1 Candida glabrata Random Genomic Library Candida glabrata genomic clone CG3420, DNA sequence.    46   1.4    1
CR380955|CR380955.1 Candida glabrata strain CBS138 chromosome I complete sequence.    46   1.4    1
dna update 2007. 6.23
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P90521) RecName: Full=6-phosphofructokinase;          Short=Pho...   402   e-111
CP001337_2617(CP001337|pid:none) Chloroflexus aggregans DSM 9485...   192   9e-48
BC081652_1(BC081652|pid:none) Danio rerio phosphofructokinase, m...   167   3e-40
A53206(A53206;S03880)6-phosphofructokinase (EC 2.7.1.11) C - rab...   164   3e-39
AE017283_2204(AE017283|pid:none) Propionibacterium acnes KPA1712...   163   4e-39
BC057710_1(BC057710|pid:none) Xenopus laevis hypothetical protei...   162   7e-39
(P47859) RecName: Full=6-phosphofructokinase type C;          EC...   162   7e-39
(Q01813) RecName: Full=6-phosphofructokinase type C;          EC...   162   1e-38
BC077756_1(BC077756|pid:none) Xenopus laevis MGC79063 protein, m...   162   1e-38
BC021698_1(BC021698|pid:none) Homo sapiens, Similar to phosphofr...   162   1e-38
protein update 2009. 6.29
PSORT 

 psg: 0.03  gvh: 0.33  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.44  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: nuclear
	 16.0 %: cytoplasmic
	 12.0 %: cytoskeletal

>> prediction for VHD572 is nuc
5' end seq. ID VHD572F
5' end seq. 
>VHD572F.Seq
ATAAATCAATTAAAATAAACACTCACTCGATAGTGTAAAAGAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAANTTTTTTTNAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 115
3' end seq. ID VHD572Z
3' end seq. 
>VHD572Z.Seq
NNNNNNNNNNCTCAATCATTGGTGCACCTGGTACCATTGCAAACAACGTACCAGGTACAA
ATATCTCAATTGGAAGTGATACCTCTTTGAATAACACATTGGATGCATTAGATAAAATCA
AACAATCAGCAGTGGCATCACGTCGTTTATTCGTCGTGGAGGTCATGGGTGCCCATTGTG
GTTATTTGGCTGCAATGAGTTCTTTAACCTCAGGTGCTGAACGTTCATATATAATGGAAA
GAGGTATCACATTGAATACACTAACCAAGGATTTGGAAATGTTTGTTGAACGTTTCAAAC
GTGAACATAGAATTGGTCTAATTATTAAGAGTGAACTTGCTAGCAACACCTACTCAACTC
ATTTCATTTATTCACTCTTCAAAGAAGAAGGTAAACATTTATTCGATGTCCGTGAATCTA
TACTCGGTCATTTACAACAAGGTGGTACTCCTTCTGCAATTGATCGTATCTTTTCAACTC
GTTTAATGAATCATTATTATCAATTCTTGGAAAACGATCTCAAAGAACATGGTCATCTTC
AAATGAATGGTTGTATTGGTTTCATTGATGGTGGTATTCATTACACTCCAATGCAAGAAA
TGATCGAAGAAATGTC
Length of 3' end seq. 616
Connected seq. ID VHD572P
Connected seq. 
>VHD572P.Seq
ATAAATCAATTAAAATAAACACTCACTCGATAGTGTAAAAGAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAANTTTTTTTNAAAAAAAAA----------CTCAA
TCATTGGTGCACCTGGTACCATTGCAAACAACGTACCAGGTACAAATATCTCAATTGGAA
GTGATACCTCTTTGAATAACACATTGGATGCATTAGATAAAATCAAACAATCAGCAGTGG
CATCACGTCGTTTATTCGTCGTGGAGGTCATGGGTGCCCATTGTGGTTATTTGGCTGCAA
TGAGTTCTTTAACCTCAGGTGCTGAACGTTCATATATAATGGAAAGAGGTATCACATTGA
ATACACTAACCAAGGATTTGGAAATGTTTGTTGAACGTTTCAAACGTGAACATAGAATTG
GTCTAATTATTAAGAGTGAACTTGCTAGCAACACCTACTCAACTCATTTCATTTATTCAC
TCTTCAAAGAAGAAGGTAAACATTTATTCGATGTCCGTGAATCTATACTCGGTCATTTAC
AACAAGGTGGTACTCCTTCTGCAATTGATCGTATCTTTTCAACTCGTTTAATGAATCATT
ATTATCAATTCTTGGAAAACGATCTCAAAGAACATGGTCATCTTCAAATGAATGGTTGTA
TTGGTTTCATTGATGGTGGTATTCATTACACTCCAATGCAAGAAATGATCGAAGAAATGT
C
Length of connected seq. 711
Full length Seq ID -
Full length Seq. -
Length of full length seq. -