AFN639
Library AF
(Link to library)
Clone ID AFN639
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16463-1
Original site URL
Representative seq. ID AFN639P
(Link to Original site)
Representative DNA sequence
>AFN639 (AFN639Q) /CSM/AF/AFN6-B/AFN639Q.Seq.d/
AAATATGTCAGCTCCAGTTTTAACCACCAGTAGTGGTTCACCAATTGATAACAATTTAAA
CTCAATGACCGCAGGTGTTAATGGTCCAATTTTAATTCAAGATTTCACTTTAATTGATAA
ACTTGCTCATTTCGATCGTGAACGTATCCCAGAACGTGTTGTACATGCTAAAGGTGCTGG
TGCCCATGGTTATTTCGAAGTTACCTCAAGTGATGTACCAAAATGGTGTAAAGCTAAATT
CTTAAATAAAGTTGGTAAGAGAACACCAATCTTCACCCGTTTCTCTACTGTTGGTGGTGA
AAAAGGTTCATCCGATTCTGAAAGAGATCCAAGAGGTTTCGCTGTCAAATTTTATACTGA
AGAAGGTAACTTTGATATGGTCGGTAATAATACTCCAGTTTTCTTTATTCGTGATCCATC
AAAATTCCCAGATTTCATTCATACACAAAAACGTAATCCACAAACAAATTGTAAAGATCC
AAATATGTTTTGGGATTTTTTAGGTCAAACACCAGAATCAACACATCAAGTATCAATTTT
ATTCTCTGATAGAGGTACACCAAAATCATATCGTCATATGCATGGTTTCTCATCACATAC
CTTAAAATXXXXXXXXXXTTACAAGGTCGTCTCTTCTCTTATCCANATACTCATCGTCAT
CGTTTAGGTGTAAACTATCAACAAATCCCAGTCAATTGTCCATTCGCCGTAAAGGGTGGT
GTTAAAAACTACCAACGTGATGGTTTCATGGCTGTCAATGGTAATGGTGGTAAAGGTCCA
AACTATCAACCAAACTCTTTCGGTGGTCCANAGCCACATCCAGAATTTGCTCAACATAAA
TTTGACGTCTCTGGTTTCGCTGCTCGTCAACCATACAATCATCCAAATGACGACTTTGTT
CAACCAGGTGATTTATATAGACTCATGTCTGAAGATGCCAAATCTCGTTTCGTCTCTAAT
TTAGTCGGTCACATGTCCGGTGTCACCATCAAAGAAATTCAAGTTCGTGCCGTTTCAAAC
TTTTACAAGGCTGACAAAGATTTAGGTGCTCGTTTATGTAAGGGTCTTGGTATTGATGTT
AATGATGTCATCAAATTCGCTGCTAGATCAAACTTGTAAATCAATATATTAAAAATAATA
AAAAAATAAAAAAATAAAAAAAAATAAAAAATTAAATCTCATCCTTTTTTAATTATAAAA
AAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence
NMSAPVLTTSSGSPIDNNLNSMTAGVNGPILIQDFTLIDKLAHFDRERIPERVVHAKGAG
AHGYFEVTSSDVPKWCKAKFLNKVGKRTPIFTRFSTVGGEKGSSDSERDPRGFAVKFYTE
EGNFDMVGNNTPVFFIRDPSKFPDFIHTQKRNPQTNCKDPNMFWDFLGQTPESTHQVSIL
FSDRGTPKSYRHMHGFSSHTLK---

---LQGRLFSYPXTHRHRLGVNYQQIPVNCPFAVKGGVKNYQRDGFMAVNGNGGKGPNYQ
PNSFGGPXPHPEFAQHKFDVSGFAARQPYNHPNDDFVQPGDLYRLMSEDAKSRFVSNLVG
HMSGVTIKEIQVRAVSNFYKADKDLGARLCKGLGIDVNDVIKFAARSNL*inilkiikk*
knkkk*kikshpfliikk


Translated Amino Acid sequence (All Frames)
Frame A:
kyvsssfnhq*wftn**qfklndrrc*wsnfnsrfhfn**tcsfrs*typrtcctc*rcw
cpwlfrsylk*ctkmv*s*ilk*sw*entnlhpflycww*krfirf*krskrfrcqily*
rr*l*ygr**yssflys*sikiprfhsytkt*stnkl*rskyvlgffrsntrintssinf
il**rytkiissyawflitylk---

---LQGRLFSYPXTHRHRLGVNYQQIPVNCPFAVKGGVKNYQRDGFMAVNGNGGKGPNYQ
PNSFGGPXPHPEFAQHKFDVSGFAARQPYNHPNDDFVQPGDLYRLMSEDAKSRFVSNLVG
HMSGVTIKEIQVRAVSNFYKADKDLGARLCKGLGIDVNDVIKFAARSNL*inilkiikk*
knkkk*kikshpfliikk

Frame B:
NMSAPVLTTSSGSPIDNNLNSMTAGVNGPILIQDFTLIDKLAHFDRERIPERVVHAKGAG
AHGYFEVTSSDVPKWCKAKFLNKVGKRTPIFTRFSTVGGEKGSSDSERDPRGFAVKFYTE
EGNFDMVGNNTPVFFIRDPSKFPDFIHTQKRNPQTNCKDPNMFWDFLGQTPESTHQVSIL
FSDRGTPKSYRHMHGFSSHTLK---

---ykvvsslixiliviv*v*tinksqsivhsp*rvvlkttnvmvswlsmvmvvkvqtin
qtlsvvxshiqnllninltslvsllvnhtiiqmttlfnqviyidsclkmpnlvssli*sv
tcpvspskkfkfvpfqtftrltki*vlvyvrvlvlmlmmssnslldqtcksiy*k**knk
kikknkklnlilf*l*kk

Frame C:
icqlqf*ppvvvhqliti*tq*pqvlmvqf*fkisl*linllisivnvsqnvlymlkvlv
pmvisklpqvmyqngvklns*iklvrehqsspvslllvvkkvhpilkeiqevslsnfilk
kvtliwsviilqfslfvihqnsqisfihknvihkqivkiqicfgif*vkhqnqhikyqfy
slievhqnhivicmvshhip*n---

---trsslllsxyssssfrcklstnpsqlsirrkgwc*klpt*wfhgcqw*ww*rsklst
klfrwsxatsricst*i*rlwfrcsstiqssk*rlcstr*fi*thv*rcqisfrl*fsrs
hvrchhqrnssscrfkllqg*qrfrcsfm*gswy*c**chqirc*iklvnqyiknnkkik
k*kkikn*issffnykk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFN639 (AFN639Q) /CSM/AF/AFN6-B/AFN639Q.Seq.d/ 2167 0.0
VFF539 (VFF539Q) /CSM/VF/VFF5-B/VFF539Q.Seq.d/ 1205 0.0
VFA796 (VFA796Q) /CSM/VF/VFA7-D/VFA796Q.Seq.d/ 1205 0.0
CFI885 (CFI885Q) /CSM/CF/CFI8-D/CFI885Q.Seq.d/ 1205 0.0
CFI568 (CFI568Q) /CSM/CF/CFI5-C/CFI568Q.Seq.d/ 1205 0.0
AFM195 (AFM195Q) /CSM/AF/AFM1-D/AFM195Q.Seq.d/ 1205 0.0
AFG803 (AFG803Q) /CSM/AF/AFG8-A/AFG803Q.Seq.d/ 1205 0.0
AFD459 (AFD459Q) /CSM/AF/AFD4-C/AFD459Q.Seq.d/ 1205 0.0
AFB476 (AFB476Q) /CSM/AF/AFB4-D/AFB476Q.Seq.d/ 1205 0.0
AFO219 (AFO219Q) /CSM/AF/AFO2-A/AFO219Q.Seq.d/ 1201 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF090443|AF090443.1 Dictyostelium discoideum catalase (cat) mRNA, complete cds. 1205 0.0 2
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 1001 0.0 4
AB064338|AB064338.1 Candida boidinii CTA1 gene for peroxisomal catalase, complete cds. 111 6e-44 5
AP004595|AP004595.1 Oceanobacillus iheyensis HTE831 genomic DNA, section 3/13. 72 4e-24 5
AE006036|AE006036.1 Pasteurella multocida PM70 section 3 of 204 of the complete genome. 98 2e-20 3
AJ005939|AJ005939.1 Methanosarcina barkeri kat gene. 68 1e-17 3
AX536932|AX536932.1 Sequence 533 from Patent WO02064766. 101 1e-17 2
AB006327|AB006327.1 Candida albicans mRNA for catalase, complete cds. 94 3e-15 2
E65314|E65314.1 Novel catalase, gene of said catalase and composition containing said catalase, and process for preparing catalase using the genetic engineering technology. 68 6e-15 3
BH404083|BH404083.1 AG-ND-173L2.TR ND-TAM Anopheles gambiae genomic clone AG-ND-173L2, DNA sequence. 56 3e-14 3
dna update 2003. 9.11
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AF090443_1(AF090443|pid:none) Dictyostelium discoideum catalase ... 422 e-116
AY378080_1(AY378080|pid:none) Tetrahymena thermophila putative c... 324 4e-87
(O93662) RecName: Full=Catalase; EC=1.11.1.6; &AJ00593... 318 2e-85
CP000300_481(CP000300|pid:none) Methanococcoides burtonii DSM 62... 311 3e-83
(Q9XZD5) RecName: Full=Peroxisomal catalase; EC=1.11.1.... 303 6e-81
CQ796333_1(CQ796333|pid:none) Sequence 109 from Patent WO2004027... 302 1e-80
AE017333_3935(AE017333|pid:none) Bacillus licheniformis DSM 13, ... 302 1e-80
CP000560_826(CP000560|pid:none) Bacillus amyloliquefaciens FZB42... 298 2e-79
(P26901) RecName: Full=Vegetative catalase; EC=1.11.1.6... 297 4e-79
(P90682) RecName: Full=Catalase; EC=1.11.1.6; &Y10611_... 295 2e-78
protein update 2009. 4.25
PSORT

psg: 0.89 gvh: 0.32 alm: 0.44 top: 0.40 tms: 0.00 mit: 0.32 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: cytoplasmic
24.0 %: nuclear
8.0 %: mitochondrial
4.0 %: plasma membrane
4.0 %: peroxisomal
4.0 %: endoplasmic reticulum

>> prediction for AFN639 is cyt

5' end seq. ID AFN639F
5' end seq.
>AFN639F.Seq
AAATATGTCAGCTCCAGTTTTAACCACCAGTAGTGGTTCACCAATTGATAACAATTTAAA
CTCAATGACCGCAGGTGTTAATGGTCCAATTTTAATTCAAGATTTCACTTTAATTGATAA
ACTTGCTCATTTCGATCGTGAACGTATCCCAGAACGTGTTGTACATGCTAAAGGTGCTGG
TGCCCATGGTTATTTCGAAGTTACCTCAAGTGATGTACCAAAATGGTGTAAAGCTAAATT
CTTAAATAAAGTTGGTAAGAGAACACCAATCTTCACCCGTTTCTCTACTGTTGGTGGTGA
AAAAGGTTCATCCGATTCTGAAAGAGATCCAAGAGGTTTCGCTGTCAAATTTTATACTGA
AGAAGGTAACTTTGATATGGTCGGTAATAATACTCCAGTTTTCTTTATTCGTGATCCATC
AAAATTCCCAGATTTCATTCATACACAAAAACGTAATCCACAAACAAATTGTAAAGATCC
AAATATGTTTTGGGATTTTTTAGGTCAAACACCAGAATCAACACATCAAGTATCAATTTT
ATTCTCTGATAGAGGTACACCAAAATCATATCGTCATATGCATGGTTTCTCATCACATAC
CTTAAAAT----------
Length of 5' end seq. 608
3' end seq. ID AFN639Z
3' end seq.
>AFN639Z.Seq
----------TTACAAGGTCGTCTCTTCTCTTATCCANATACTCATCGTCATCGTTTAGG
TGTAAACTATCAACAAATCCCAGTCAATTGTCCATTCGCCGTAAAGGGTGGTGTTAAAAA
CTACCAACGTGATGGTTTCATGGCTGTCAATGGTAATGGTGGTAAAGGTCCAAACTATCA
ACCAAACTCTTTCGGTGGTCCANAGCCACATCCAGAATTTGCTCAACATAAATTTGACGT
CTCTGGTTTCGCTGCTCGTCAACCATACAATCATCCAAATGACGACTTTGTTCAACCAGG
TGATTTATATAGACTCATGTCTGAAGATGCCAAATCTCGTTTCGTCTCTAATTTAGTCGG
TCACATGTCCGGTGTCACCATCAAAGAAATTCAAGTTCGTGCCGTTTCAAACTTTTACAA
GGCTGACAAAGATTTAGGTGCTCGTTTATGTAAGGGTCTTGGTATTGATGTTAATGATGT
CATCAAATTCGCTGCTAGATCAAACTTGTAAATCAATATATTAAAAATAATAAAAAAATA
AAAAAATAAAAAAAAATAAAAAATTAAATCTCATCCTTTTTTAATTATAAAAAAAA
Length of 3' end seq. 586
Connected seq. ID AFN639P
Connected seq.
>AFN639P.Seq
AAATATGTCAGCTCCAGTTTTAACCACCAGTAGTGGTTCACCAATTGATAACAATTTAAA
CTCAATGACCGCAGGTGTTAATGGTCCAATTTTAATTCAAGATTTCACTTTAATTGATAA
ACTTGCTCATTTCGATCGTGAACGTATCCCAGAACGTGTTGTACATGCTAAAGGTGCTGG
TGCCCATGGTTATTTCGAAGTTACCTCAAGTGATGTACCAAAATGGTGTAAAGCTAAATT
CTTAAATAAAGTTGGTAAGAGAACACCAATCTTCACCCGTTTCTCTACTGTTGGTGGTGA
AAAAGGTTCATCCGATTCTGAAAGAGATCCAAGAGGTTTCGCTGTCAAATTTTATACTGA
AGAAGGTAACTTTGATATGGTCGGTAATAATACTCCAGTTTTCTTTATTCGTGATCCATC
AAAATTCCCAGATTTCATTCATACACAAAAACGTAATCCACAAACAAATTGTAAAGATCC
AAATATGTTTTGGGATTTTTTAGGTCAAACACCAGAATCAACACATCAAGTATCAATTTT
ATTCTCTGATAGAGGTACACCAAAATCATATCGTCATATGCATGGTTTCTCATCACATAC
CTTAAAAT----------TTACAAGGTCGTCTCTTCTCTTATCCANATACTCATCGTCAT
CGTTTAGGTGTAAACTATCAACAAATCCCAGTCAATTGTCCATTCGCCGTAAAGGGTGGT
GTTAAAAACTACCAACGTGATGGTTTCATGGCTGTCAATGGTAATGGTGGTAAAGGTCCA
AACTATCAACCAAACTCTTTCGGTGGTCCANAGCCACATCCAGAATTTGCTCAACATAAA
TTTGACGTCTCTGGTTTCGCTGCTCGTCAACCATACAATCATCCAAATGACGACTTTGTT
CAACCAGGTGATTTATATAGACTCATGTCTGAAGATGCCAAATCTCGTTTCGTCTCTAAT
TTAGTCGGTCACATGTCCGGTGTCACCATCAAAGAAATTCAAGTTCGTGCCGTTTCAAAC
TTTTACAAGGCTGACAAAGATTTAGGTGCTCGTTTATGTAAGGGTCTTGGTATTGATGTT
AATGATGTCATCAAATTCGCTGCTAGATCAAACTTGTAAATCAATATATTAAAAATAATA
AAAAAATAAAAAAATAAAAAAAAATAAAAAATTAAATCTCATCCTTTTTTAATTATAAAA
AAAA
Length of connected seq. 1194
Full length Seq ID -
Full length Seq. -
Length of full length seq. -