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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHD460
Library VH
(Link to library)
Clone ID VHD460
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15527-1
Original site URL
Representative seq. ID VHD460P
(Link to Original site)
Representative DNA sequence 
>VHD460 (VHD460Q) /CSM/VH/VHD4-C/VHD460Q.Seq.d/
ATAAAATAATTTTAATAAATCAAAAAAATTAAACAAATAAATAAAAACAAATAAAAATAA
ATACAAAAAATGAATTGTGGTTCAAAATATACTTTTGTTCAAGATGATGAAGAGGAAGAA
TTTGTTGTTGATAGCAATATTTTCTTTCAAGGTGCTCAACCTCAACAACCTCAACAACCT
CAACAACCTCAACAACCTCAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAACAATCAAGAGGATTCTTTAGTATTTTTGGTAGATCAGCA
GCACCACAAGCACCACCACCAGCACCAATGAATAATCGTGCACCAAATCAACTTAAAGCT
AAATAAAGAAAGCAACAACCAATGTATTAGTAGTCAATTTAGGTACAGNTGCAAAGGAAT
CATCTATTCAAACTGGTGATGGTTACTTTTGTAAAAAATGTAATTGTGGTTTCAGCAATA
TCANTGCATTAAAAGAGATAACATTAAATGATGGTAAAAAGCATCXXXXXXXXXXTTAGC
AACAAATGTATCCGTTAAGATATTCCTCCATAAAGGTCTTTACGTTAGTGACTTTGATAA
TAATAATAATACTGAAAAGAGTTTTGTTGAAAGAGTGATTGGTAATGTAAATCAAGACAC
AACAATTTCATTTGAATATGGTGTTAGATCCTCTAAATTAATTGATAAATCTTTGAAATC
AATACCATTCCAATTACAAATCTTTTATACAACACTCACTGGTAAGAAATGTGTAAGAAT
GATCACTCAAACTCAAGAGATTACACCAAGCTNTGATTTGGCTGAAGAACATGCAAACAT
CGAGGCATTGGGTATTAATATGGTTCAAACCTCTACAAAGATTGCTTCATCAGGTGATTA
TGAAAAATNTCGTGNTAAAAATTATTCACATGCTGGACTTATGCAAAAGGTAATGATGAA
GAAACAAAAGGCTACTAAAGTCGATTCAGATGAAATCGATTCAATGTCAAATTATATGCA
ACAAGCTCAAGATATTGAAACTCAACTATCAAATACTGTTTCAAATGAAAAGAGTTATAA
TTCAAGTGGTGATAGATTAAAATCACGTCAACAAAATCGTGATGATGCAACTGCTAATAT
GCTTTATAATATGTCAAATANAATAGTACAAAATCAAAGNAAAAAATTCATTTAAAC
sequence update 2002.10.25
Translated Amino Acid sequence 
kiilinqkn*tnk*kqikintknelwfkiyfcsr**rgricc**qyflsrcststtstts
ttsttstttttttttttttttttttttikril*yfw*issttstttstne*sctkst*s*
IKKATTNVLVVNLGTXAKESSIQTGDGYFCKKCNCGFSNIXALKEITLNDGKKH---

---LATNVSVKIFLHKGLYVSDFDNNNNTEKSFVERVIGNVNQDTTISFEYGVRSSKLID
KSLKSIPFQLQIFYTTLTGKKCVRMITQTQEITPSXDLAEEHANIEALGINMVQTSTKIA
SSGDYEKXRXKNYSHAGLMQKVMMKKQKATKVDSDEIDSMSNYMQQAQDIETQLSNTVSN
EKSYNSSGDRLKSRQQNRDDATANMLYNMSNXIVQNQXKKFI*
Translated Amino Acid sequence (All Frames) 
Frame A:
ik*f**ikkikqinknk*k*iqkmncgskytfvqddeeeefvvdsniffqgaqpqqpqqp
qqpqqpqqqqqqqqqqqqqqqqqqqqqqsrgffsifgrsaapqapppapmnnrapnqlka
k*rkqqpmy**si*vqxqrnhlfklvmvtfvknvivvsaisxh*kr*h*mmvksi---

---LATNVSVKIFLHKGLYVSDFDNNNNTEKSFVERVIGNVNQDTTISFEYGVRSSKLID
KSLKSIPFQLQIFYTTLTGKKCVRMITQTQEITPSXDLAEEHANIEALGINMVQTSTKIA
SSGDYEKXRXKNYSHAGLMQKVMMKKQKATKVDSDEIDSMSNYMQQAQDIETQLSNTVSN
EKSYNSSGDRLKSRQQNRDDATANMLYNMSNXIVQNQXKKFI*

Frame B:
*nnfnkskklnk*iktnknkykk*ivvqnillfkmmkrknllliaifsfkvlnlnnlnnl
nnlnnlnnnnnnnnnnnnnnnnnnnnnnqedslvflvdqqhhkhhhqhq*iivhqinlkl
nkesnnqcissqfryxckgiiysnw*wlll*km*lwfqqyxcikrdnik*w*ka---

---*qqmyplryssikvftlvtliiiiilkrvllke*lvm*iktqqfhlnmvldpln*li
nl*nqyhsnyksfiqhslvrnv*e*slklkrlhqaxiwlknmqtsrhwvliwfkplqrll
hqvimknxvxkiihmldlckr***rnkrllksiqmksiqcqiicnklkilklnyqilfqm
krviiqvvid*nhvnkivmmqllicfiicqix*ykikxknsfk

Frame C:
kiilinqkn*tnk*kqikintknelwfkiyfcsr**rgricc**qyflsrcststtstts
ttsttstttttttttttttttttttttikril*yfw*issttstttstne*sctkst*s*
IKKATTNVLVVNLGTXAKESSIQTGDGYFCKKCNCGFSNIXALKEITLNDGKKH---

---snkcir*dipp*rslr**l*****y*kefc*ksdw*cksrhnnfi*iwc*il*in**
ifeintipitnllynthw*emckndhsnsrdytkl*fg*rtckhrgigy*ygsnlykdcf
ir*l*kxsx*klftcwtyakgndeetkgy*srfr*nrfnvklyatssry*nstikycfk*
kel*fkw**ikitstks**cnc*yal*yvkxnstkskxkihln
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHD460 (VHD460Q) /CSM/VH/VHD4-C/VHD460Q.Seq.d/                       1748   0.0
VHD313 (VHD313Q) /CSM/VH/VHD3-A/VHD313Q.Seq.d/                       1275   0.0
VHC281 (VHC281Q) /CSM/VH/VHC2-D/VHC281Q.Seq.d/                       1275   0.0
VHA146 (VHA146Q) /CSM/VH/VHA1-B/VHA146Q.Seq.d/                       1275   0.0
AHE161 (AHE161Q) /CSM/AH/AHE1-C/AHE161Q.Seq.d/                       1275   0.0
VHK228 (VHK228Q) /CSM/VH/VHK2-B/VHK228Q.Seq.d/                       1251   0.0
VHN609 (VHN609Q) /CSM/VH/VHN6-A/VHN609Q.Seq.d/                       1249   0.0
CHH115 (CHH115Q) /CSM/CH/CHH1-A/CHH115Q.Seq.d/                       1245   0.0
AHN832 (AHN832Q) /CSM/AH/AHN8-B/AHN832Q.Seq.d/                       1243   0.0
AFB295 (AFB295Q) /CSM/AF/AFB2-D/AFB295Q.Seq.d/                       1199   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

EC786532|EC786532.1 RAE00017951 Reclinomonas americana Home made, normalized (normalized_ran) Reclinomonas americana cDNA, mRNA sequence.    58   6e-04  1
EC791898|EC791898.1 RAE00014301 Reclinomonas americana Home made, normalized (normalized_ran) Reclinomonas americana cDNA, mRNA sequence.    56   0.002  1
AC112559|AC112559.4 Rattus norvegicus clone CH230-204L20, WORKING DRAFT SEQUENCE, 2 unordered pieces.    56   0.002  1
AC103029|AC103029.6 Rattus norvegicus clone CH230-203F15, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    54   0.009  1
CL513863|CL513863.1 SAIL_880_C10.v2 SAIL Collection Arabidopsis thaliana genomic clone SAIL_880_C10.v2, genomic survey sequence.    54   0.009  1
AL161591|AL161591.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 87.    54   0.009  1
AL035601|AL035601.1 Arabidopsis thaliana DNA chromosome 4, BAC clone  F6G17 (ESSA  project).    54   0.009  1
EC383579| ring finger protein 10 [Homo sapiens], mRNA sequence.    52   0.037  1
EH015744|EH015744.1 USDA-FP_188314 Lysiphlebus testaceipes adult whole body Lysiphlebus testaceipes cDNA clone WLt084_H05 5', mRNA sequence.    34   0.082  3
AL121804|AL121804.2 Drosophila melanogaster BAC clone BACR7C10.    48   0.096  3
dna update 2007. 5.17
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q75J93) RecName: Full=Circularly permutated Ras protein 1;     ...    65   4e-09
CP000412_70(CP000412|pid:none) Lactobacillus delbrueckii subsp. ...    36   3.1
CR954253_92(CR954253|pid:none) Lactobacillus delbrueckii subsp. ...    36   3.1
CR380952_27(CR380952|pid:none) Candida glabrata strain CBS138 ch...    35   5.2
CP000817_1013(CP000817|pid:none) Lysinibacillus sphaericus C3-41...    34   8.9
protein update 2009. 6.29
PSORT 

 psg: 0.87  gvh: 0.47  alm: 0.46  top: 0.40  tms: 0.00  mit: 0.35  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: nuclear
	 28.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  8.0 %: vacuolar
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for VHD460 is nuc
5' end seq. ID VHD460F
5' end seq. 
>VHD460F.Seq
ATAAAATAATTTTAATAAATCAAAAAAATTAAACAAATAAATAAAAACAAATAAAAATAA
ATACAAAAAATGAATTGTGGTTCAAAATATACTTTTGTTCAAGATGATGAAGAGGAAGAA
TTTGTTGTTGATAGCAATATTTTCTTTCAAGGTGCTCAACCTCAACAACCTCAACAACCT
CAACAACCTCAACAACCTCAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAACAATCAAGAGGATTCTTTAGTATTTTTGGTAGATCAGCA
GCACCACAAGCACCACCACCAGCACCAATGAATAATCGTGCACCAAATCAACTTAAAGCT
AAATAAAGAAAGCAACAACCAATGTATTAGTAGTCAATTTAGGTACAGNTGCAAAGGAAT
CATCTATTCAAACTGGTGATGGTTACTTTTGTAAAAAATGTAATTGTGGTTTCAGCAATA
TCANTGCATTAAAAGAGATAACATTAAATGATGGTAAAAAGCATCNNNNNNNNNN
Length of 5' end seq. 535
3' end seq. ID VHD460Z
3' end seq. 
>VHD460Z.Seq
NNNNNNNNNNTTAGCAACAAATGTATCCGTTAAGATATTCCTCCATAAAGGTCTTTACGT
TAGTGACTTTGATAATAATAATAATACTGAAAAGAGTTTTGTTGAAAGAGTGATTGGTAA
TGTAAATCAAGACACAACAATTTCATTTGAATATGGTGTTAGATCCTCTAAATTAATTGA
TAAATCTTTGAAATCAATACCATTCCAATTACAAATCTTTTATACAACACTCACTGGTAA
GAAATGTGTAAGAATGATCACTCAAACTCAAGAGATTACACCAAGCTNTGATTTGGCTGA
AGAACATGCAAACATCGAGGCATTGGGTATTAATATGGTTCAAACCTCTACAAAGATTGC
TTCATCAGGTGATTATGAAAAATNTCGTGNTAAAAATTATTCACATGCTGGACTTATGCA
AAAGGTAATGATGAAGAAACAAAAGGCTACTAAAGTCGATTCAGATGAAATCGATTCAAT
GTCAAATTATATGCAACAAGCTCAAGATATTGAAACTCAACTATCAAATACTGTTTCAAA
TGAAAAGAGTTATAATTCAAGTGGTGATAGATTAAAATCACGTCAACAAAATCGTGATGA
TGCAACTGCTAATATGCTTTATAATATGTCAAATANAATAGTACAAAATCAAAGNAAAAA
ATTCATTTAAAC
Length of 3' end seq. 672
Connected seq. ID VHD460P
Connected seq. 
>VHD460P.Seq
ATAAAATAATTTTAATAAATCAAAAAAATTAAACAAATAAATAAAAACAAATAAAAATAA
ATACAAAAAATGAATTGTGGTTCAAAATATACTTTTGTTCAAGATGATGAAGAGGAAGAA
TTTGTTGTTGATAGCAATATTTTCTTTCAAGGTGCTCAACCTCAACAACCTCAACAACCT
CAACAACCTCAACAACCTCAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAACAATCAAGAGGATTCTTTAGTATTTTTGGTAGATCAGCA
GCACCACAAGCACCACCACCAGCACCAATGAATAATCGTGCACCAAATCAACTTAAAGCT
AAATAAAGAAAGCAACAACCAATGTATTAGTAGTCAATTTAGGTACAGNTGCAAAGGAAT
CATCTATTCAAACTGGTGATGGTTACTTTTGTAAAAAATGTAATTGTGGTTTCAGCAATA
TCANTGCATTAAAAGAGATAACATTAAATGATGGTAAAAAGCATC----------TTAGC
AACAAATGTATCCGTTAAGATATTCCTCCATAAAGGTCTTTACGTTAGTGACTTTGATAA
TAATAATAATACTGAAAAGAGTTTTGTTGAAAGAGTGATTGGTAATGTAAATCAAGACAC
AACAATTTCATTTGAATATGGTGTTAGATCCTCTAAATTAATTGATAAATCTTTGAAATC
AATACCATTCCAATTACAAATCTTTTATACAACACTCACTGGTAAGAAATGTGTAAGAAT
GATCACTCAAACTCAAGAGATTACACCAAGCTNTGATTTGGCTGAAGAACATGCAAACAT
CGAGGCATTGGGTATTAATATGGTTCAAACCTCTACAAAGATTGCTTCATCAGGTGATTA
TGAAAAATNTCGTGNTAAAAATTATTCACATGCTGGACTTATGCAAAAGGTAATGATGAA
GAAACAAAAGGCTACTAAAGTCGATTCAGATGAAATCGATTCAATGTCAAATTATATGCA
ACAAGCTCAAGATATTGAAACTCAACTATCAAATACTGTTTCAAATGAAAAGAGTTATAA
TTCAAGTGGTGATAGATTAAAATCACGTCAACAAAATCGTGATGATGCAACTGCTAATAT
GCTTTATAATATGTCAAATANAATAGTACAAAATCAAAGNAAAAAATTCATTTAAAC
Length of connected seq. 1187
Full length Seq ID -
Full length Seq. -
Length of full length seq. -