VHD447
Library VH
(Link to library)
Clone ID VHD447
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16288-1|Contig-U16338-1
Original site URL
Representative seq. ID VHD447P
(Link to Original site)
Representative DNA sequence
>VHD447 (VHD447Q) /CSM/VH/VHD4-B/VHD447Q.Seq.d/
ATAATTTTTTATTTTTCATCCTTTTCAAATTAAATTCATTTGTATATATATAACTTCACA
CACCTCAAAACAATTTATTTGATTATTTAAATATTTAAATAACATTTTAAAAATAGATTG
TGTGTGCTTTTTATTATATAAAAATAATTTAAATTTTATATAAAAAAAAAAAAATCAAAA
AAAAAAXXXXXXXXXXGAACAACAATTATCAAATGTATCTGTTAAAATGGTACCTTCCGA
TCCAAAATTATTAAAATATGAATGTTCAATCCCAATCGATGTACTCCCATACGGTGAACC
ACAACAATGTTATGTTGCCATTCGTTACATTCCTGCCAATGGTTATCCATTATGTTCATT
CAGTAATGCCCTCAAATTCAAAGTTAAAGAAGTCGATCCATCCACTGGTGAACTCGATGA
ACCAGGCTATGATGATCAATACAGTTTAGAGAGATTGGAAATCGTTCCAAAAGATTTCCT
CAATAGAGCTTTCGTTGGTAACTTTTCCGAGGAATGGAAGAAAATGTCTGAAGATACCCA
ATTAGTTCAAACCTTTTCTTTAGTTGGTGTTAAATCTATCGATGAAGCTGTAAAACAAAT
CATTAAAAC
sequence update 2002.10.25
Translated Amino Acid sequence
iifyfssfsn*ihlyiynfthlktiylii*ifk*hfknrlcvlfii*k*FKFYIKKKKSK
KK---

---EQQLSNVSVKMVPSDPKLLKYECSIPIDVLPYGEPQQCYVAIRYIPANGYPLCSFSN
ALKFKVKEVDPSTGELDEPGYDDQYSLERLEIVPKDFLNRAFVGNFSEEWKKMSEDTQLV
QTFSLVGVKSIDEAVKQIIK


Translated Amino Acid sequence (All Frames)
Frame A:
iifyfssfsn*ihlyiynfthlktiylii*ifk*hfknrlcvlfii*k*FKFYIKKKKSK
KK---

---EQQLSNVSVKMVPSDPKLLKYECSIPIDVLPYGEPQQCYVAIRYIPANGYPLCSFSN
ALKFKVKEVDPSTGELDEPGYDDQYSLERLEIVPKDFLNRAFVGNFSEEWKKMSEDTQLV
QTFSLVGVKSIDEAVKQIIK

Frame B:
*ffifhpfqikficiyitshtskqfi*lfkylnnilkidcvcfllyknnlnfi*kkknqk
k---

---nnnyqmyllkwylpiqny*nmnvqsqsmyshtvnhnnvmlpfvtflpmvihyvhsvm
psnsklkksihplvnsmnqammintv*rdwksfqkissielslvtfprngrkclkipn*f
kpfl*lvlnlsmkl*nkslk

Frame C:
nflffilfklnsfvyi*lhtpqnnlfdylni*itf*k*ivcafyyikii*ilykkkkikk
k---

---ttiikcic*ngtfrskiiki*mfnpnrctpir*tttmlcchslhscqwlsimfiq*c
pqiqs*rsrsihw*tr*trl**siqfreignrskrfpq*sfrw*lfrgmeenv*rypiss
nlffswc*iyr*scktnh*n

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHD447 (VHD447Q) /CSM/VH/VHD4-B/VHD447Q.Seq.d/ 819 0.0
VHB433 (VHB433Q) /CSM/VH/VHB4-B/VHB433Q.Seq.d/ 819 0.0
SHJ896 (SHJ896Q) /CSM/SH/SHJ8-D/SHJ896Q.Seq.d/ 819 0.0
SHD188 (SHD188Q) /CSM/SH/SHD1-D/SHD188Q.Seq.d/ 819 0.0
SHA286 (SHA286Q) /CSM/SH/SHA2-D/SHA286Q.Seq.d/ 819 0.0
SHA205 (SHA205Q) /CSM/SH/SHA2-A/SHA205Q.Seq.d/ 819 0.0
AHI226 (AHI226Q) /CSM/AH/AHI2-B/AHI226Q.Seq.d/ 819 0.0
AHH301 (AHH301Q) /CSM/AH/AHH3-A/AHH301Q.Seq.d/ 819 0.0
AHH171 (AHH171Q) /CSM/AH/AHH1-C/AHH171Q.Seq.d/ 819 0.0
AHD885 (AHD885Q) /CSM/AH/AHD8-D/AHD885Q.Seq.d/ 819 0.0

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

CR751565|CR751565.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-209H21. 40 0.38 5
ED103971|ED103971.1 AUAC-aaj47e06.b1 Ascaris suum whole genome shotgun library (PMAJ_4 GSS) Ascaris suum genomic, genomic survey sequence. 36 0.59 2
ED197004|ED197004.1 AUAC-aav64c10.b1 Ascaris suum whole genome shotgun library (PMAJ_4 GSS) Ascaris suum genomic, genomic survey sequence. 36 0.64 2
BX679670|BX679670.2 Zebrafish DNA sequence from clone CH211-286D16 in linkage group 5. 40 0.93 3
AC189414|AC189414.1 Brassica rapa subsp. pekinensis clone KBrB061K11, complete sequence. 44 1.1 4
EJ254899|EJ254899.1 1095349003011 Global-Ocean-Sampling_GS-27-01-01-1P8-2P0KB marine metagenome genomic clone 1061005467564 5', genomic survey sequence. 46 1.2 1
CT025892|CT025892.19 Zebrafish DNA sequence from clone DKEY-26I16 in linkage group 18. 38 1.2 4
CG975507|CG975507.1 MBEKI95TF mth2 Medicago truncatula genomic clone 74O21, genomic survey sequence. 40 2.4 2
DN701284|DN701284.1 CLJ34-G05.x1d-t SHGC-CLJ Gasterosteus aculeatus cDNA clone CLJ34-G05 3', mRNA sequence. 44 4.6 1
DN667620|DN667620.1 CFW39-B07.x1d-t SHGC-CFW Gasterosteus aculeatus cDNA clone CFW39-B07 3', mRNA sequence. 44 4.6 1
dna update 2007. 5.17
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q8H852) RecName: Full=Coatomer subunit gamma-1; AltName: Full=G... 104 2e-21
(Q4AEF8) RecName: Full=Coatomer subunit gamma; AltName: Full=Gam... 102 6e-21
(P53620) RecName: Full=Coatomer subunit gamma; AltName: Full=Gam... 102 1e-20
S33957(S33957;S27017;S33958) coat protein gamma-COP - bovine (fr... 102 1e-20
(Q9QZE5) RecName: Full=Coatomer subunit gamma; AltName: Full=Gam... 101 2e-20
AK077461_1(AK077461|pid:none) Mus musculus 8 days embryo whole b... 101 2e-20
BC008553_1(BC008553|pid:none) Mus musculus coatomer protein comp... 101 2e-20
BT045480_1(BT045480|pid:none) Salmo salar clone ssal-rgf-522-272... 100 3e-20
BC020498_1(BC020498|pid:none) Homo sapiens coatomer protein comp... 100 5e-20
AK123939_1(AK123939|pid:none) Homo sapiens cDNA FLJ41945 fis, cl... 100 5e-20
protein update 2009. 6.29
PSORT

psg: 0.39 gvh: 0.28 alm: 0.45 top: 0.53 tms: 0.00 mit: 0.27 mip: 0.00
nuc: 0.04 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: cytoplasmic
24.0 %: nuclear
12.0 %: mitochondrial
8.0 %: cytoskeletal

>> prediction for VHD447 is cyt

5' end seq. ID VHD447F
5' end seq.
>VHD447F.Seq
ATAATTTTTTATTTTTCATCCTTTTCAAATTAAATTCATTTGTATATATATAACTTCACA
CACCTCAAAACAATTTATTTGATTATTTAAATATTTAAATAACATTTTAAAAATAGATTG
TGTGTGCTTTTTATTATATAAAAATAATTTAAATTTTATATAAAAAAAAAAAAATCAAAA
AAAAAANNNNNNNNNN
Length of 5' end seq. 196
3' end seq. ID VHD447Z
3' end seq.
>VHD447Z.Seq
NNNNNNNNNNGAACAACAATTATCAAATGTATCTGTTAAAATGGTACCTTCCGATCCAAA
ATTATTAAAATATGAATGTTCAATCCCAATCGATGTACTCCCATACGGTGAACCACAACA
ATGTTATGTTGCCATTCGTTACATTCCTGCCAATGGTTATCCATTATGTTCATTCAGTAA
TGCCCTCAAATTCAAAGTTAAAGAAGTCGATCCATCCACTGGTGAACTCGATGAACCAGG
CTATGATGATCAATACAGTTTAGAGAGATTGGAAATCGTTCCAAAAGATTTCCTCAATAG
AGCTTTCGTTGGTAACTTTTCCGAGGAATGGAAGAAAATGTCTGAAGATACCCAATTAGT
TCAAACCTTTTCTTTAGTTGGTGTTAAATCTATCGATGAAGCTGTAAAACAAATCATTAA
AAC
Length of 3' end seq. 423
Connected seq. ID VHD447P
Connected seq.
>VHD447P.Seq
ATAATTTTTTATTTTTCATCCTTTTCAAATTAAATTCATTTGTATATATATAACTTCACA
CACCTCAAAACAATTTATTTGATTATTTAAATATTTAAATAACATTTTAAAAATAGATTG
TGTGTGCTTTTTATTATATAAAAATAATTTAAATTTTATATAAAAAAAAAAAAATCAAAA
AAAAAA----------GAACAACAATTATCAAATGTATCTGTTAAAATGGTACCTTCCGA
TCCAAAATTATTAAAATATGAATGTTCAATCCCAATCGATGTACTCCCATACGGTGAACC
ACAACAATGTTATGTTGCCATTCGTTACATTCCTGCCAATGGTTATCCATTATGTTCATT
CAGTAATGCCCTCAAATTCAAAGTTAAAGAAGTCGATCCATCCACTGGTGAACTCGATGA
ACCAGGCTATGATGATCAATACAGTTTAGAGAGATTGGAAATCGTTCCAAAAGATTTCCT
CAATAGAGCTTTCGTTGGTAACTTTTCCGAGGAATGGAAGAAAATGTCTGAAGATACCCA
ATTAGTTCAAACCTTTTCTTTAGTTGGTGTTAAATCTATCGATGAAGCTGTAAAACAAAT
CATTAAAAC
Length of connected seq. 599
Full length Seq ID -
Full length Seq. -
Length of full length seq. -