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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHD389
Library VH
(Link to library)
Clone ID VHD389
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U16485-1
Original site URL
Representative seq. ID VHD389P
(Link to Original site)
Representative DNA sequence 
>VHD389 (VHD389Q) /CSM/VH/VHD3-D/VHD389Q.Seq.d/
ATTATAAAATTATTAAAATATTTAAAAATAATTAAAATAAAAAAAGAAAAATGAGTGGTG
TTGTTGTAACTTTAATTGAAAACGGTCCAGCTATTTTAGGTGCTCTTAAAACTGGTGCTG
GTCTTATCCGTAGCTTTTTCCCAGACAAAACTAAAGATCTTCAAGATGTTACCTATCGTG
TTTATGAAGATGAACAACCAAAAGGAAAAGTTAGAGTTATCCTTGTAAACGAATCTAATG
GATGGAACAAAGCTATTAGACTCTATCATGGTGGTAGTGGATATTCTGAATGTAAAGCAG
GTGATAGCACTGGTACTGTTGCCAAAGGTGATCCACATTTGAAATATTCAATTCAAACAA
TTGATTTCCCATGGAAATCAGGTGGTCAACAATACATTGCCTTACAATTATGGAAACCAA
AAGCATTAGGTATTTGGTACGATCTTGAAGAAATTAGAATCACTCCAAGTAACCAATCTG
ATTATGATGGTAAAACATTAGTCTTTTACTGGGGTACTGATGGTTCACCTTATTTCCATA
ACCCAAATCATTTAATTAAACCATATGAACTTTAAAAATTCTTAAAACTCATTTCAAATT
TATTATAAATAAATGAAACATATTXXXXXXXXXXATTATAAAATTATTAAAATATTTAAA
AATAATTAAAATAAAAAAAGAAAAATGAGTGGTGTTGTTGTAACTTTAATTGAAAACGGT
CCAGCTATTTTAGGTGCTCTTAAAACTGGTGCTGGTCTTATCCGTAGCTTTTTCCCAGAC
AAAACTAAAGATCTTCAAGATGTTACCTATCGTGTTTATGAAGATGAACAACCAAAAGGA
AAAGTTAGAGTTATCCTTGTAAACGAATCTAATGGATGGAACAAAGCTATTAGACTCTAT
CATGGTGGTAGTGGATATTCTGAATGTAAAGCAGGTGATAGCACTGGTACTGTTGCCAAA
GGTGATCCACATTTGAAATATTCAATTCAAACAATTGATTTCCCATGGAAATCAGGTGGT
CAACAATACATTGCCTTACAATTATGGAAACCAAAAGCATTAGGTATTTGGTACGATCTT
GAAGAAATTAGAATCACTCCAAGTAACCAATCTGATTATGATGGTAAAACATTAGTCTTT
TACTGGGGTACTGATGGTTCACCTTATTTCCATAACCCAAATCATTTAATTAAACCATAT
GAACTTTAAAAATTCTTAAAACTCATTTCAAATTTATTATAAATAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
ykiikifknn*nkkrkmsgvvvtliengpailgalktgaglirsffpdktkdlqdvtyrv
yedeqpkgkvrvilvnesngwnkairlyhggsgyseckagdstgtvakgdphlkysiqti
dfpwksggqqyialqlwkpkalgiwydleeiritpsnqsdydgktlvfywgtdgspyfhn
pnhlikpyel*kflklisnll*INETY---

---IIKLLKYLKIIKIKKEK*vvll*l*lktvqlf*vllklvlvlsvafsqtklkifkml
pivfmkmnnqkeklelsl*tnlmdgtklldsimvvvdilnvkqvialvllpkvihi*niq
fkqlishgnqvvnntlpynygnqkh*vfgtilkkleslqvtnlimmvkh*sftgvlmvhl
isitqii*lnhmnfkns*nsfqiyyk*
Translated Amino Acid sequence (All Frames) 
Frame A:
iikllkylkiikikkek*vvll*l*lktvqlf*vllklvlvlsvafsqtklkifkmlpiv
fmkmnnqkeklelsl*tnlmdgtklldsimvvvdilnvkqvialvllpkvihi*niqfkq
lishgnqvvnntlpynygnqkh*vfgtilkkleslqvtnlimmvkh*sftgvlmvhlisi
tqii*lnhmnfkns*nsfqiyyk*mkhi---

---IIKLLKYLKIIKIKKEK*vvll*l*lktvqlf*vllklvlvlsvafsqtklkifkml
pivfmkmnnqkeklelsl*tnlmdgtklldsimvvvdilnvkqvialvllpkvihi*niq
fkqlishgnqvvnntlpynygnqkh*vfgtilkkleslqvtnlimmvkh*sftgvlmvhl
isitqii*lnhmnfkns*nsfqiyyk*

Frame B:
l*ny*ni*k*lk*kkknewcccnfn*krssyfrcs*nwcwsyp*lfprqn*rssrcylsc
l*r*ttkrks*sypckri*wmeqsy*tlsww*wif*m*sr**hwyccqr*stfeifnsnn
*fpmeirwstihcltimetksirylvrs*rn*nhsk*pi*l*w*nislllgy*wftlfp*
pksfn*ti*tlkilkthfkfiink*ni---

---l*ny*ni*k*lk*kkknewcccnfn*krssyfrcs*nwcwsyp*lfprqn*rssrcy
lscl*r*ttkrks*sypckri*wmeqsy*tlsww*wif*m*sr**hwyccqr*stfeifn
snn*fpmeirwstihcltimetksirylvrs*rn*nhsk*pi*l*w*nislllgy*wftl
fp*pksfn*ti*tlkilkthfkfiink

Frame C:
ykiikifknn*nkkrkmsgvvvtliengpailgalktgaglirsffpdktkdlqdvtyrv
yedeqpkgkvrvilvnesngwnkairlyhggsgyseckagdstgtvakgdphlkysiqti
dfpwksggqqyialqlwkpkalgiwydleeiritpsnqsdydgktlvfywgtdgspyfhn
pnhlikpyel*kflklisnll*INETY---

---ykiikifknn*nkkrkmsgvvvtliengpailgalktgaglirsffpdktkdlqdvt
yrvyedeqpkgkvrvilvnesngwnkairlyhggsgyseckagdstgtvakgdphlkysi
qtidfpwksggqqyialqlwkpkalgiwydleeiritpsnqsdydgktlvfywgtdgspy
fhnpnhlikpyel*kflklisnll*i
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHH461 (VHH461Q) /CSM/VH/VHH4-C/VHH461Q.Seq.d/                       1114   0.0
VHD389 (VHD389Q) /CSM/VH/VHD3-D/VHD389Q.Seq.d/                       1114   0.0
VFG618 (VFG618Q) /CSM/VF/VFG6-A/VFG618Q.Seq.d/                       1114   0.0
VFD812 (VFD812Q) /CSM/VF/VFD8-A/VFD812Q.Seq.d/                       1114   0.0
VSB312 (VSB312Q) /CSM/VS/VSB3-A/VSB312Q.Seq.d/                       1053   0.0
VHN796 (VHN796Q) /CSM/VH/VHN7-D/VHN796Q.Seq.d/                       1019   0.0
VFI208 (VFI208Q) /CSM/VF/VFI2-A/VFI208Q.Seq.d/                       1019   0.0
VSC620 (VSC620Q) /CSM/VS/VSC6-A/VSC620Q.Seq.d/                       1013   0.0
VSK302 (VSK302Q) /CSM/VS/VSK3-A/VSK302Q.Seq.d/                       1005   0.0
VSJ206 (VSJ206Q) /CSM/VS/VSJ2-A/VSJ206Q.Seq.d/                       1005   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CE365539|CE365539.1 tigr-gss-dog-17000361803833 Dog Library Canis familiaris genomic,genomic survey sequence.    38   0.16   2
AM464763|AM464763.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X023015.3, clone ENTAV 115.    38   0.31   4
AP006250|AP006250.1 Homo sapiens genomic DNA, chromosome 8, clone:RP11-632H17, complete sequence.    38   0.34   5
AC132893|AC132893.23 Mus musculus chromosome 15, clone RP24-270E8, complete sequence.    40   0.41   2
AP000078|AP000078.1 Homo sapiens genomic DNA, chromosome 8p11.2, senescence gene region, section 14/19.    38   0.44   4
AL467252|AL467252.1 T. brucei sheared genomic DNA clone 157f12, forward sequence.    36   0.45   2
AL457318|AL457318.1 T. brucei sheared genomic DNA clone 66f02, reverse sequence.    36   0.46   2
AL488330|AL488330.1 T. brucei sheared genomic DNA clone 266g01, forward sequence.    36   0.46   2
AC116219|AC116219.3 Rattus norvegicus clone CH230-251E21, WORKING DRAFT SEQUENCE, 1 ordered piece.    40   0.52   2
AL476405|AL476405.1 T. brucei sheared genomic DNA clone 205f08, reverse sequence.    36   0.52   2
dna update 2007. 5.16
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000391_9(CP000391|pid:none) Mesorhizobium sp. BNC1 plasmid 2, ...    34   9.5
protein update 2009. 2.26
PSORT 

 psg: 0.60  gvh: 0.08  alm: 0.53  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.24  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: nuclear
	 20.0 %: cytoplasmic
	  4.0 %: mitochondrial

>> prediction for VHD389 is nuc
5' end seq. ID VHD389F
5' end seq. 
>VHD389F.Seq
ATTATAAAATTATTAAAATATTTAAAAATAATTAAAATAAAAAAAGAAAAATGAGTGGTG
TTGTTGTAACTTTAATTGAAAACGGTCCAGCTATTTTAGGTGCTCTTAAAACTGGTGCTG
GTCTTATCCGTAGCTTTTTCCCAGACAAAACTAAAGATCTTCAAGATGTTACCTATCGTG
TTTATGAAGATGAACAACCAAAAGGAAAAGTTAGAGTTATCCTTGTAAACGAATCTAATG
GATGGAACAAAGCTATTAGACTCTATCATGGTGGTAGTGGATATTCTGAATGTAAAGCAG
GTGATAGCACTGGTACTGTTGCCAAAGGTGATCCACATTTGAAATATTCAATTCAAACAA
TTGATTTCCCATGGAAATCAGGTGGTCAACAATACATTGCCTTACAATTATGGAAACCAA
AAGCATTAGGTATTTGGTACGATCTTGAAGAAATTAGAATCACTCCAAGTAACCAATCTG
ATTATGATGGTAAAACATTAGTCTTTTACTGGGGTACTGATGGTTCACCTTATTTCCATA
ACCCAAATCATTTAATTAAACCATATGAACTTTAAAAATTCTTAAAACTCATTTCAAATT
TATTATAAATAAATGAAACATATTNNNNNNNNNN
Length of 5' end seq. 634
3' end seq. ID VHD389Z
3' end seq. 
>VHD389Z.Seq
NNNNNNNNNNATTATAAAATTATTAAAATATTTAAAAATAATTAAAATAAAAAAAGAAAA
ATGAGTGGTGTTGTTGTAACTTTAATTGAAAACGGTCCAGCTATTTTAGGTGCTCTTAAA
ACTGGTGCTGGTCTTATCCGTAGCTTTTTCCCAGACAAAACTAAAGATCTTCAAGATGTT
ACCTATCGTGTTTATGAAGATGAACAACCAAAAGGAAAAGTTAGAGTTATCCTTGTAAAC
GAATCTAATGGATGGAACAAAGCTATTAGACTCTATCATGGTGGTAGTGGATATTCTGAA
TGTAAAGCAGGTGATAGCACTGGTACTGTTGCCAAAGGTGATCCACATTTGAAATATTCA
ATTCAAACAATTGATTTCCCATGGAAATCAGGTGGTCAACAATACATTGCCTTACAATTA
TGGAAACCAAAAGCATTAGGTATTTGGTACGATCTTGAAGAAATTAGAATCACTCCAAGT
AACCAATCTGATTATGATGGTAAAACATTAGTCTTTTACTGGGGTACTGATGGTTCACCT
TATTTCCATAACCCAAATCATTTAATTAAACCATATGAACTTTAAAAATTCTTAAAACTC
ATTTCAAATTTATTATAAATAAA
Length of 3' end seq. 623
Connected seq. ID VHD389P
Connected seq. 
>VHD389P.Seq
ATTATAAAATTATTAAAATATTTAAAAATAATTAAAATAAAAAAAGAAAAATGAGTGGTG
TTGTTGTAACTTTAATTGAAAACGGTCCAGCTATTTTAGGTGCTCTTAAAACTGGTGCTG
GTCTTATCCGTAGCTTTTTCCCAGACAAAACTAAAGATCTTCAAGATGTTACCTATCGTG
TTTATGAAGATGAACAACCAAAAGGAAAAGTTAGAGTTATCCTTGTAAACGAATCTAATG
GATGGAACAAAGCTATTAGACTCTATCATGGTGGTAGTGGATATTCTGAATGTAAAGCAG
GTGATAGCACTGGTACTGTTGCCAAAGGTGATCCACATTTGAAATATTCAATTCAAACAA
TTGATTTCCCATGGAAATCAGGTGGTCAACAATACATTGCCTTACAATTATGGAAACCAA
AAGCATTAGGTATTTGGTACGATCTTGAAGAAATTAGAATCACTCCAAGTAACCAATCTG
ATTATGATGGTAAAACATTAGTCTTTTACTGGGGTACTGATGGTTCACCTTATTTCCATA
ACCCAAATCATTTAATTAAACCATATGAACTTTAAAAATTCTTAAAACTCATTTCAAATT
TATTATAAATAAATGAAACATATT----------ATTATAAAATTATTAAAATATTTAAA
AATAATTAAAATAAAAAAAGAAAAATGAGTGGTGTTGTTGTAACTTTAATTGAAAACGGT
CCAGCTATTTTAGGTGCTCTTAAAACTGGTGCTGGTCTTATCCGTAGCTTTTTCCCAGAC
AAAACTAAAGATCTTCAAGATGTTACCTATCGTGTTTATGAAGATGAACAACCAAAAGGA
AAAGTTAGAGTTATCCTTGTAAACGAATCTAATGGATGGAACAAAGCTATTAGACTCTAT
CATGGTGGTAGTGGATATTCTGAATGTAAAGCAGGTGATAGCACTGGTACTGTTGCCAAA
GGTGATCCACATTTGAAATATTCAATTCAAACAATTGATTTCCCATGGAAATCAGGTGGT
CAACAATACATTGCCTTACAATTATGGAAACCAAAAGCATTAGGTATTTGGTACGATCTT
GAAGAAATTAGAATCACTCCAAGTAACCAATCTGATTATGATGGTAAAACATTAGTCTTT
TACTGGGGTACTGATGGTTCACCTTATTTCCATAACCCAAATCATTTAATTAAACCATAT
GAACTTTAAAAATTCTTAAAACTCATTTCAAATTTATTATAAATAAA
Length of connected seq. 1237
Full length Seq ID -
Full length Seq. -
Length of full length seq. -