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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHD313
Library VH
(Link to library)
Clone ID VHD313
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15527-1
Original site URL
Representative seq. ID VHD313P
(Link to Original site)
Representative DNA sequence 
>VHD313 (VHD313Q) /CSM/VH/VHD3-A/VHD313Q.Seq.d/
AATAAATCAAAAAAATTAAACAAATAAATAAAAACAAATAAAAATAAATACAAAAAATGA
ATTGTGGTTCAAAATATACTTTTGTTCAAGATGATGAAGAGGAAGAATTTGTTGTTGATA
GCAATATTTTCTTTCAAGGTGCTCAACCTCAACAACCTCAACAACCTCAACAACCTCAAC
AACCTCAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAATCAAGAGGATTCTTTANTATTTTTGGTAGATCAGCAGCACCACAAGCAC
CACCACCAGCACCAATGAATAATCGTGCACCAAATCAACTTAAAGCTAAAATAAAGAAAG
CAACAACCAATGTATTAGTAGTCAATTTAGGTACAGTTGCAAAGGAATCATCTATTCAAA
CTGGTGATGGTTACTTTTGTAAAAAATGTAATTGTGGTTTCAGCAATATCAATGCATTAA
AAGAGATAACATTANATGATGGTAAAXXXXXXXXXXCATTAAAGGTACCGATACTAAACC
TTGAAGTGATTGGTAAATTGGCAAATAATACCGGTGGTGAAGTTAACATTATGGATCCAA
TCAATTTAAATGATGGTTTCAAAGAAATTCTTAGTTTACCTACTTTAGCAACAAATGTAT
CCGTTAAGATATTCCTCCATAAAGGTCTTTACGTTAGTGACTTTGATAATAATAATAATA
CTGAAAAGAGTTTTGTTGAAAGAGTGATTGGTAATGTAAATCAAGACACAACAATTTCAT
TTGAATATGGTGTTAGATCCTCTAAATTAATTGATAAATCTTTGAAATCAATACCATTCC
AATTACAAATCTTTTATACAACACTCACTGGTAAGAAATGTGTAAGAATGATCACTCAAA
CTCAAGAGATTACAACAAGCTCTGATTTGGCTGAAGAACATGCAAACATCGAGGCATTGG
GTATTAATATGGTTCAAACCTCTACAAAGATTGCTTCATCAGGTGATTATGAAAAATCTC
GTGCTAAAAATTATTCACATGCTGGACTTATGCAAAAGGTAATGATGAAGAAACAAAAGG
CTACTAAAGTCGATTCAGATGAAATCGATTCAATGTCAAATTATATGCAACAAGCTCAAG
ATATTGAAACTCAACTATCAAATACTGTTTCAAATGAAAAGAGTTATAATTCAAGTGGTG
ATAGATTAAAATCACGTCAACAAAATCGTGATGATGCAACTGCTAATATGCTTTATAATA
TGTCAAATANAATAGTACAAAATCAAAGNAAAAAATTCATTTAAAC
sequence update 2002.10.25
Translated Amino Acid sequence 
*ikkikqinknk*k*IQKMNCGSKYTFVQDDEEEEFVVDSNIFFQGAQPQQPQQPQQPQQ
PQQQQQQQQQQQQQQQQQQQQQQSRGFFXIFGRSAAPQAPPPAPMNNRAPNQLKAKIKKA
TTNVLVVNLGTVAKESSIQTGDGYFCKKCNCGFSNINALKEITLXDGK---

---LKVPILNLEVIGKLANNTGGEVNIMDPINLNDGFKEILSLPTLATNVSVKIFLHKGL
YVSDFDNNNNTEKSFVERVIGNVNQDTTISFEYGVRSSKLIDKSLKSIPFQLQIFYTTLT
GKKCVRMITQTQEITTSSDLAEEHANIEALGINMVQTSTKIASSGDYEKSRAKNYSHAGL
MQKVMMKKQKATKVDSDEIDSMSNYMQQAQDIETQLSNTVSNEKSYNSSGDRLKSRQQNR
DDATANMLYNMSNXIVQNQXKKFI*
Translated Amino Acid sequence (All Frames) 
Frame A:
nkskklnk*iktnknkykk*ivvqnillfkmmkrknllliaifsfkvlnlnnlnnlnnln
nlnnnnnnnnnnnnnnnnnnnnnnqedslxflvdqqhhkhhhqhq*iivhqinlklk*rk
qqpmy**si*vqlqrnhlfklvmvtfvknvivvsaismh*kr*hxmmv---

---h*ryry*tlk*lvnwqiipvvkltlwiqsi*mmvskkflvyll*qqmyplryssikv
ftlvtliiiiilkrvllke*lvm*iktqqfhlnmvldpln*linl*nqyhsnyksfiqhs
lvrnv*e*slklkrlqqaliwlknmqtsrhwvliwfkplqrllhqvimknlvlkiihmld
lckr***rnkrllksiqmksiqcqiicnklkilklnyqilfqmkrviiqvvid*nhvnki
vmmqllicfiicqix*ykikxknsfk

Frame B:
inqkn*tnk*kqikintknelwfkiyfcsr**rgricc**qyflsrcststtsttsttst
tstttttttttttttttttttttikrilxyfw*issttstttstne*sctkst*s*nkes
nnqcissqfrysckgiiysnw*wlll*km*lwfqqyqcikrdnix*w*---

---ikgtdtkp*sdw*igk*yrw*s*hygsnqfk*wfqrns*ftyfsnkcir*dipp*rs
lr**l*****y*kefc*ksdw*cksrhnnfi*iwc*il*in**ifeintipitnllynth
w*emckndhsnsrdynkl*fg*rtckhrgigy*ygsnlykdcfir*l*kisc*klftcwt
yakgndeetkgy*srfr*nrfnvklyatssry*nstikycfk*kel*fkw**ikitstks
**cnc*yal*yvkxnstkskxkihln

Frame C:
*ikkikqinknk*k*IQKMNCGSKYTFVQDDEEEEFVVDSNIFFQGAQPQQPQQPQQPQQ
PQQQQQQQQQQQQQQQQQQQQQQSRGFFXIFGRSAAPQAPPPAPMNNRAPNQLKAKIKKA
TTNVLVVNLGTVAKESSIQTGDGYFCKKCNCGFSNINALKEITLXDGK---

---LKVPILNLEVIGKLANNTGGEVNIMDPINLNDGFKEILSLPTLATNVSVKIFLHKGL
YVSDFDNNNNTEKSFVERVIGNVNQDTTISFEYGVRSSKLIDKSLKSIPFQLQIFYTTLT
GKKCVRMITQTQEITTSSDLAEEHANIEALGINMVQTSTKIASSGDYEKSRAKNYSHAGL
MQKVMMKKQKATKVDSDEIDSMSNYMQQAQDIETQLSNTVSNEKSYNSSGDRLKSRQQNR
DDATANMLYNMSNXIVQNQXKKFI*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHD313 (VHD313Q) /CSM/VH/VHD3-A/VHD313Q.Seq.d/                       2008   0.0
VHA146 (VHA146Q) /CSM/VH/VHA1-B/VHA146Q.Seq.d/                       1538   0.0
AHE161 (AHE161Q) /CSM/AH/AHE1-C/AHE161Q.Seq.d/                       1538   0.0
VHC281 (VHC281Q) /CSM/VH/VHC2-D/VHC281Q.Seq.d/                       1413   0.0
CHH115 (CHH115Q) /CSM/CH/CHH1-A/CHH115Q.Seq.d/                       1392   0.0
VHH660 (VHH660Q) /CSM/VH/VHH6-C/VHH660Q.Seq.d/                       1342   0.0
AFB295 (AFB295Q) /CSM/AF/AFB2-D/AFB295Q.Seq.d/                       1340   0.0
VHF367 (VHF367Q) /CSM/VH/VHF3-C/VHF367Q.Seq.d/                       1291   0.0
VHK228 (VHK228Q) /CSM/VH/VHK2-B/VHK228Q.Seq.d/                       1283   0.0
VHK474 (VHK474Q) /CSM/VH/VHK4-D/VHK474Q.Seq.d/                       1281   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

EC786532|EC786532.1 RAE00017951 Reclinomonas americana Home made, normalized (normalized_ran) Reclinomonas americana cDNA, mRNA sequence.    58   7e-04  1
EC791898|EC791898.1 RAE00014301 Reclinomonas americana Home made, normalized (normalized_ran) Reclinomonas americana cDNA, mRNA sequence.    56   0.003  1
AC112559|AC112559.4 Rattus norvegicus clone CH230-204L20, WORKING DRAFT SEQUENCE, 2 unordered pieces.    56   0.003  1
AC103029|AC103029.6 Rattus norvegicus clone CH230-203F15, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    54   0.010  1
CL513863|CL513863.1 SAIL_880_C10.v2 SAIL Collection Arabidopsis thaliana genomic clone SAIL_880_C10.v2, genomic survey sequence.    54   0.010  1
AL161591|AL161591.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 87.    54   0.010  1
AL035601|AL035601.1 Arabidopsis thaliana DNA chromosome 4, BAC clone  F6G17 (ESSA  project).    54   0.010  1
AC181240|AC181240.1 Strongylocentrotus purpuratus clone R3-4010K20, WORKING DRAFT SEQUENCE, 35 unordered pieces.    50   0.031  9
EC383579| ring finger protein 10 [Homo sapiens], mRNA sequence.    52   0.041  1
AL831761|AL831761.9 Mouse DNA sequence from clone RP23-318H16 on chromosome 4.    48   0.074  3
dna update 2007. 5.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q75J93) RecName: Full=Circularly permutated Ras protein 1;     ...    86   2e-15
AE000511_592(AE000511|pid:none) Helicobacter pylori 26695, compl...    37   1.6
CP000849_501(CP000849|pid:none) Rickettsia bellii OSU 85-389, co...    36   2.7
CP001072_740(CP001072|pid:none) Helicobacter pylori Shi470, comp...    36   2.7
CP000241_580(CP000241|pid:none) Helicobacter pylori HPAG1, compl...    36   2.7
CP001173_543(CP001173|pid:none) Helicobacter pylori G27, complet...    36   2.7
AE001439_542(AE001439|pid:none) Helicobacter pylori J99, complet...    36   2.7
CP000412_70(CP000412|pid:none) Lactobacillus delbrueckii subsp. ...    36   3.5
AL034557_50(AL034557|pid:none) Plasmodium falciparum MAL4P1.           36   3.5
CR380952_27(CR380952|pid:none) Candida glabrata strain CBS138 ch...    36   3.5
protein update 2009. 6.29
PSORT 

 psg: 0.51  gvh: 0.54  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 24.0 %: nuclear
	 20.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: peroxisomal

>> prediction for VHD313 is cyt
5' end seq. ID VHD313F
5' end seq. 
>VHD313F.Seq
AATAAATCAAAAAAATTAAACAAATAAATAAAAACAAATAAAAATAAATACAAAAAATGA
ATTGTGGTTCAAAATATACTTTTGTTCAAGATGATGAAGAGGAAGAATTTGTTGTTGATA
GCAATATTTTCTTTCAAGGTGCTCAACCTCAACAACCTCAACAACCTCAACAACCTCAAC
AACCTCAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAATCAAGAGGATTCTTTANTATTTTTGGTAGATCAGCAGCACCACAAGCAC
CACCACCAGCACCAATGAATAATCGTGCACCAAATCAACTTAAAGCTAAAATAAAGAAAG
CAACAACCAATGTATTAGTAGTCAATTTAGGTACAGTTGCAAAGGAATCATCTATTCAAA
CTGGTGATGGTTACTTTTGTAAAAAATGTAATTGTGGTTTCAGCAATATCAATGCATTAA
AAGAGATAACATTANATGATGGTAAANNNNNNNNNN
Length of 5' end seq. 516
3' end seq. ID VHD313Z
3' end seq. 
>VHD313Z.Seq
NNNNNNNNNNCATTAAAGGTACCGATACTAAACCTTGAAGTGATTGGTAAATTGGCAAAT
AATACCGGTGGTGAAGTTAACATTATGGATCCAATCAATTTAAATGATGGTTTCAAAGAA
ATTCTTAGTTTACCTACTTTAGCAACAAATGTATCCGTTAAGATATTCCTCCATAAAGGT
CTTTACGTTAGTGACTTTGATAATAATAATAATACTGAAAAGAGTTTTGTTGAAAGAGTG
ATTGGTAATGTAAATCAAGACACAACAATTTCATTTGAATATGGTGTTAGATCCTCTAAA
TTAATTGATAAATCTTTGAAATCAATACCATTCCAATTACAAATCTTTTATACAACACTC
ACTGGTAAGAAATGTGTAAGAATGATCACTCAAACTCAAGAGATTACAACAAGCTCTGAT
TTGGCTGAAGAACATGCAAACATCGAGGCATTGGGTATTAATATGGTTCAAACCTCTACA
AAGATTGCTTCATCAGGTGATTATGAAAAATCTCGTGCTAAAAATTATTCACATGCTGGA
CTTATGCAAAAGGTAATGATGAAGAAACAAAAGGCTACTAAAGTCGATTCAGATGAAATC
GATTCAATGTCAAATTATATGCAACAAGCTCAAGATATTGAAACTCAACTATCAAATACT
GTTTCAAATGAAAAGAGTTATAATTCAAGTGGTGATAGATTAAAATCACGTCAACAAAAT
CGTGATGATGCAACTGCTAATATGCTTTATAATATGTCAAATANAATAGTACAAAATCAA
AGNAAAAAATTCATTTAAAC
Length of 3' end seq. 800
Connected seq. ID VHD313P
Connected seq. 
>VHD313P.Seq
AATAAATCAAAAAAATTAAACAAATAAATAAAAACAAATAAAAATAAATACAAAAAATGA
ATTGTGGTTCAAAATATACTTTTGTTCAAGATGATGAAGAGGAAGAATTTGTTGTTGATA
GCAATATTTTCTTTCAAGGTGCTCAACCTCAACAACCTCAACAACCTCAACAACCTCAAC
AACCTCAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAATCAAGAGGATTCTTTANTATTTTTGGTAGATCAGCAGCACCACAAGCAC
CACCACCAGCACCAATGAATAATCGTGCACCAAATCAACTTAAAGCTAAAATAAAGAAAG
CAACAACCAATGTATTAGTAGTCAATTTAGGTACAGTTGCAAAGGAATCATCTATTCAAA
CTGGTGATGGTTACTTTTGTAAAAAATGTAATTGTGGTTTCAGCAATATCAATGCATTAA
AAGAGATAACATTANATGATGGTAAA----------CATTAAAGGTACCGATACTAAACC
TTGAAGTGATTGGTAAATTGGCAAATAATACCGGTGGTGAAGTTAACATTATGGATCCAA
TCAATTTAAATGATGGTTTCAAAGAAATTCTTAGTTTACCTACTTTAGCAACAAATGTAT
CCGTTAAGATATTCCTCCATAAAGGTCTTTACGTTAGTGACTTTGATAATAATAATAATA
CTGAAAAGAGTTTTGTTGAAAGAGTGATTGGTAATGTAAATCAAGACACAACAATTTCAT
TTGAATATGGTGTTAGATCCTCTAAATTAATTGATAAATCTTTGAAATCAATACCATTCC
AATTACAAATCTTTTATACAACACTCACTGGTAAGAAATGTGTAAGAATGATCACTCAAA
CTCAAGAGATTACAACAAGCTCTGATTTGGCTGAAGAACATGCAAACATCGAGGCATTGG
GTATTAATATGGTTCAAACCTCTACAAAGATTGCTTCATCAGGTGATTATGAAAAATCTC
GTGCTAAAAATTATTCACATGCTGGACTTATGCAAAAGGTAATGATGAAGAAACAAAAGG
CTACTAAAGTCGATTCAGATGAAATCGATTCAATGTCAAATTATATGCAACAAGCTCAAG
ATATTGAAACTCAACTATCAAATACTGTTTCAAATGAAAAGAGTTATAATTCAAGTGGTG
ATAGATTAAAATCACGTCAACAAAATCGTGATGATGCAACTGCTAATATGCTTTATAATA
TGTCAAATANAATAGTACAAAATCAAAGNAAAAAATTCATTTAAAC
Length of connected seq. 1296
Full length Seq ID -
Full length Seq. -
Length of full length seq. -