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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHD263
Library VH
(Link to library)
Clone ID VHD263
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16438-1
Original site URL
Representative seq. ID VHD263P
(Link to Original site)
Representative DNA sequence 
>VHD263 (VHD263Q) /CSM/VH/VHD2-C/VHD263Q.Seq.d/
ATATATATACATAATTAAAATTTCATACAATCATGGTAGCAATTAATTCAGTTTCTAATT
ACCTATCATTATTGGATGAAGATCAATTAGAATTGAAATCATATTCATTAGAAAAATTAG
ATTCATGTGTTGATGAATTTTGGTCAGAAATTGCATCATCTTCAATCGATAAAATAAAAT
CATTATCAGTCAATAAACAATTTCCAAAACATGAACTTGCATCATTAGTTTTATCAAAAG
TATATTACAATTTAAGTGATTTCCCAAATTCAATGGAATATGCGTTATCAGCTGGTTCTT
TATTTAATGTTTTATCAAAGAGTGAATACATTGAAACACTTTTATATAAATTTATTGATG
AATATATTAAATTAAGAACATCCACAAATAAAGACACTGTTATCAATCCACATCTCGAAT
CAATTGTAATGGGAATGTTTGATAGATGTTTCAAGGAAGGATCATATAAACAGGCATTAG
GTATTGCTATTGAAGCAAGAAGATTAGATATAATTGAAAAAGCAATTTCACAATCTGGTA
ATGTAAATAGTATGCTCTCTTATTGTCTTCACATTTGTAATGTTTCAGTAAACAATCGTC
ATTTCCGTCATAGTGTTTTAGGXXXXXXXXXXGAGCTGCCGTCACTTGTATTGGTTTCGT
TTTGTCCAGACAACCAGAGAAATGTCCAAAGGCAATCGCTTTGTTGGCCGAAAGTTATAA
CCCACACGTTCGTTATGGTGCCGCTTTCGCTTTGGGTATTGCATGTGCTGGTACCGGTCA
AAGAGATGCTTTGGAAATTTTAAAATCACTCACCACCGATAGTGTTGGTTACGTTAAACA
AGCCGCTTGGATCTCCATGGCTATGGTATTGATTCAAACCAGTAAAGAGTTGGTACCAGA
GGCTGAAACCGCCAGAAAATTATTCGCCACTTGTATCAGTGATAAACGTGAGGATTCAAT
GTCCAAGTTTGGTGCTGTATTAGTATTTGGTGTCATTGATGCCGGTGGTAGAAACTCTAC
CATTCAATTACATTCACCAAGTGGTCACAAGAATATGAATGCTATCGTTGGTATTGCTGG
TTTCCTTCAATTTTGGTATTGGTTCCCAATGACTCACTTTATGGGCTTAGCGTTAACTCC
AACCTCTATCATTGGTCTCAACAAAAACTTGGAAATGCCAGTTTTCACTTTCAAATCCAA
TTGCAGACCATCACTCTTTGCTTATCCACCTGAAACCAAACCATCCACCACAAGCTCAAC
CAATAAAATTGAAACAGCCATCCTCTCCTACAGTAGAAAGAATAAACTTCAAAGTTCTCG
TTCCGCTATGAATATTGATCAAGATGTNAAAAGAAAGAAAAAGAGGAGAAAGAAGCCAAA
NAAAAAGAAGCCAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
iyt*LKFHTIMVAINSVSNYLSLLDEDQLELKSYSLEKLDSCVDEFWSEIASSSIDKIKS
LSVNKQFPKHELASLVLSKVYYNLSDFPNSMEYALSAGSLFNVLSKSEYIETLLYKFIDE
YIKLRTSTNKDTVINPHLESIVMGMFDRCFKEGSYKQALGIAIEARRLDIIEKAISQSGN
VNSMLSYCLHICNVSVNNRHFRHSVL---

---AAVTCIGFVLSRQPEKCPKAIALLAESYNPHVRYGAAFALGIACAGTGQRDALEILK
SLTTDSVGYVKQAAWISMAMVLIQTSKELVPEAETARKLFATCISDKREDSMSKFGAVLV
FGVIDAGGRNSTIQLHSPSGHKNMNAIVGIAGFLQFWYWFPMTHFMGLALTPTSIIGLNK
NLEMPVFTFKSNCRPSLFAYPPETKPSTTSSTNKIETAILSYSRKNKLQSSRSAMNIDQD
VKRKKKRRKKPXKKKP
Translated Amino Acid sequence (All Frames) 
Frame A:
iyihn*nfiqsw*qliqflityhywmkin*n*nhih*kn*ihvlmnfgqklhhlqsik*n
hyqsinnfqnmnlhh*fyqkyiti*visqiqwnmryqlvlylmfyqrvntlkhfyinllm
niln*ehpqiktllsihisnql*weclidvsrkdhinrh*vlllkqed*i*lkkqfhnlv
m*ivcslivftfvmfq*tivisvivf*---

---elpslvlvsfcpdnqrnvqrqslcwpkvithtfvmvplslwvlhvlvpvkemlwkf*
nhsppivlvtlnkplgspwlwy*fkpvkswyqrlkppenysplvsvinvriqcpslvly*
ylvslmpvvetlpfnyihqvvtri*mlslvllvsfnfgigsq*ltlwa*r*lqplslvst
ktwkcqfslsnpiadhhsllihlkpnhppqaqpiklkqpssptverinfkvlvpl*ilik
mxkerkrgersqxkrsq

Frame B:
yiyiikisynhgsn*fsf*lpiiig*rsirieiifirkirfmc**ilvrnciifnr*nki
iisq*tiskt*tciisfiksilqfk*fpkfngicviswffi*cfike*ih*ntfi*iy**
iy*iknihk*rhcyqstsrincngnv**mfqgrii*tgirycy*skkiryn*ksnftiw*
ck*yalllsshl*cfskqssfps*cfr---

---scrhlywfrfvqttremskgnrfvgrkl*ptrslwcrfrfgycmcwyrskrcfgnfk
ithhr*cwlr*tsrldlhgygidsnq*rvgtrg*nrqkiirhlyq**t*gfnvqvwccis
iwch*crw*klyhsitftkwsqeyecyrwycwfpsilvlvpndslyglsvnsnlyhwsqq
klgnasfhfqiqlqtitlclst*nqtihhklnq*n*nshpllq*ke*tskfsfryey*sr
cxkkekeekeakxkeak

Frame C:
iyt*LKFHTIMVAINSVSNYLSLLDEDQLELKSYSLEKLDSCVDEFWSEIASSSIDKIKS
LSVNKQFPKHELASLVLSKVYYNLSDFPNSMEYALSAGSLFNVLSKSEYIETLLYKFIDE
YIKLRTSTNKDTVINPHLESIVMGMFDRCFKEGSYKQALGIAIEARRLDIIEKAISQSGN
VNSMLSYCLHICNVSVNNRHFRHSVL---

---AAVTCIGFVLSRQPEKCPKAIALLAESYNPHVRYGAAFALGIACAGTGQRDALEILK
SLTTDSVGYVKQAAWISMAMVLIQTSKELVPEAETARKLFATCISDKREDSMSKFGAVLV
FGVIDAGGRNSTIQLHSPSGHKNMNAIVGIAGFLQFWYWFPMTHFMGLALTPTSIIGLNK
NLEMPVFTFKSNCRPSLFAYPPETKPSTTSSTNKIETAILSYSRKNKLQSSRSAMNIDQD
VKRKKKRRKKPXKKKP
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHD263 (VHD263Q) /CSM/VH/VHD2-C/VHD263Q.Seq.d/                       2611   0.0
AHD441 (AHD441Q) /CSM/AH/AHD4-B/AHD441Q.Seq.d/                       1394   0.0
VHH809 (VHH809Q) /CSM/VH/VHH8-A/VHH809Q.Seq.d/                       1372   0.0
AHH514 (AHH514Q) /CSM/AH/AHH5-A/AHH514Q.Seq.d/                       1372   0.0
AHH247 (AHH247Q) /CSM/AH/AHH2-B/AHH247Q.Seq.d/                       1372   0.0
AHD195 (AHD195Q) /CSM/AH/AHD1-D/AHD195Q.Seq.d/                       1372   0.0
VHJ632 (VHJ632Q) /CSM/VH/VHJ6-B/VHJ632Q.Seq.d/                       1364   0.0
VHI540 (VHI540Q) /CSM/VH/VHI5-B/VHI540Q.Seq.d/                       1364   0.0
SHA555 (SHA555Q) /CSM/SH/SHA5-C/SHA555Q.Seq.d/                       1360   0.0
AHK617 (AHK617Q) /CSM/AH/AHK6-A/AHK617Q.Seq.d/                       1360   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BB972379|BB972379.1 Plasmodium berghei strain ANKA cDNA clone:OK002089, ookinete 5'EST.    62   1e-06  2
BP114566|BP114566.1 Plasmodium berghei strain ANKA cDNA, clone: FCPb3250.    62   5e-05  1
BB971525|BB971525.1 Plasmodium berghei strain ANKA cDNA clone:OK001197, ookinete 5' EST.    62   5e-05  1
CP000496|CP000496.1 Pichia stipitis CBS 6054 chromosome 2, complete sequence.    58   7e-04  1
CR341305|CR341305.1 mte1-73F15FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula.    40   0.009  2
EH431835|EH431835.1 NPE00000726 Neocallimastix patriciarum ZAP II cDNA library Neocallimastix patriciarum cDNA, mRNA sequence.    36   0.033  3
DY606328|DY606328.1 IMMUNEF045811F15 POSSUM_01-C-POSSUM-IMMUNE-2KB Trichosurus vulpecula cDNA clone 1061021069269, mRNA sequence.    52   0.044  1
DY601389|DY601389.1 LIVERF074993O11 POSSUM_01-POSSUM-LIVER-2KB Trichosurus vulpecula cDNA clone 1061019910953, mRNA sequence.    52   0.044  1
DY600634|DY600634.1 LIVERF074991B17 POSSUM_01-POSSUM-LIVER-2KB Trichosurus vulpecula cDNA clone 1061019913719, mRNA sequence.    52   0.044  1
EC826598|EC826598.1 SME00003256 esmbsro2 Sawyeria marylandensis cDNA, mRNA sequence.    52   0.044  1
dna update 2007. 5.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BX571973_4(BX571973|pid:none) Zebrafish DNA sequence from clone ...   257   8e-67
(Q5F418) RecName: Full=26S proteasome non-ATPase regulatory subu...   252   2e-65
BC014013_1(BC014013|pid:none) Homo sapiens proteasome (prosome, ...   251   3e-65
(Q3TXS7) RecName: Full=26S proteasome non-ATPase regulatory subu...   251   4e-65
BC105883_1(BC105883|pid:none) Rattus norvegicus proteasome (pros...   251   4e-65
D44466_1(D44466|pid:none) Homo sapiens mRNA for proteasome subun...   251   4e-65
BC047897_1(BC047897|pid:none) Homo sapiens proteasome (prosome, ...   251   4e-65
(Q8IV79) RecName: Full=26S proteasome non-ATPase regulatory subu...   251   4e-65
BC001053_1(BC001053|pid:none) Homo sapiens proteasome (prosome, ...   251   4e-65
BC151445_1(BC151445|pid:none) Bos taurus proteasome (prosome, ma...   251   4e-65
protein update 2009. 6.28
PSORT 

 psg: 0.92  gvh: 0.35  alm: 0.36  top: 0.17  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.31  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: nuclear
	 16.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for VHD263 is nuc
5' end seq. ID VHD263F
5' end seq. 
>VHD263F.Seq
ATATATATACATAATTAAAATTTCATACAATCATGGTAGCAATTAATTCAGTTTCTAATT
ACCTATCATTATTGGATGAAGATCAATTAGAATTGAAATCATATTCATTAGAAAAATTAG
ATTCATGTGTTGATGAATTTTGGTCAGAAATTGCATCATCTTCAATCGATAAAATAAAAT
CATTATCAGTCAATAAACAATTTCCAAAACATGAACTTGCATCATTAGTTTTATCAAAAG
TATATTACAATTTAAGTGATTTCCCAAATTCAATGGAATATGCGTTATCAGCTGGTTCTT
TATTTAATGTTTTATCAAAGAGTGAATACATTGAAACACTTTTATATAAATTTATTGATG
AATATATTAAATTAAGAACATCCACAAATAAAGACACTGTTATCAATCCACATCTCGAAT
CAATTGTAATGGGAATGTTTGATAGATGTTTCAAGGAAGGATCATATAAACAGGCATTAG
GTATTGCTATTGAAGCAAGAAGATTAGATATAATTGAAAAAGCAATTTCACAATCTGGTA
ATGTAAATAGTATGCTCTCTTATTGTCTTCACATTTGTAATGTTTCAGTAAACAATCGTC
ATTTCCGTCATAGTGTTTTAGGNNNNNNNNNN
Length of 5' end seq. 632
3' end seq. ID VHD263Z
3' end seq. 
>VHD263Z.Seq
NNNNNNNNNNGAGCTGCCGTCACTTGTATTGGTTTCGTTTTGTCCAGACAACCAGAGAAA
TGTCCAAAGGCAATCGCTTTGTTGGCCGAAAGTTATAACCCACACGTTCGTTATGGTGCC
GCTTTCGCTTTGGGTATTGCATGTGCTGGTACCGGTCAAAGAGATGCTTTGGAAATTTTA
AAATCACTCACCACCGATAGTGTTGGTTACGTTAAACAAGCCGCTTGGATCTCCATGGCT
ATGGTATTGATTCAAACCAGTAAAGAGTTGGTACCAGAGGCTGAAACCGCCAGAAAATTA
TTCGCCACTTGTATCAGTGATAAACGTGAGGATTCAATGTCCAAGTTTGGTGCTGTATTA
GTATTTGGTGTCATTGATGCCGGTGGTAGAAACTCTACCATTCAATTACATTCACCAAGT
GGTCACAAGAATATGAATGCTATCGTTGGTATTGCTGGTTTCCTTCAATTTTGGTATTGG
TTCCCAATGACTCACTTTATGGGCTTAGCGTTAACTCCAACCTCTATCATTGGTCTCAAC
AAAAACTTGGAAATGCCAGTTTTCACTTTCAAATCCAATTGCAGACCATCACTCTTTGCT
TATCCACCTGAAACCAAACCATCCACCACAAGCTCAACCAATAAAATTGAAACAGCCATC
CTCTCCTACAGTAGAAAGAATAAACTTCAAAGTTCTCGTTCCGCTATGAATATTGATCAA
GATGTNAAAAGAAAGAAAAAGAGGAGAAAGAAGCCAAANAAAAAGAAGCCAAA
Length of 3' end seq. 773
Connected seq. ID VHD263P
Connected seq. 
>VHD263P.Seq
ATATATATACATAATTAAAATTTCATACAATCATGGTAGCAATTAATTCAGTTTCTAATT
ACCTATCATTATTGGATGAAGATCAATTAGAATTGAAATCATATTCATTAGAAAAATTAG
ATTCATGTGTTGATGAATTTTGGTCAGAAATTGCATCATCTTCAATCGATAAAATAAAAT
CATTATCAGTCAATAAACAATTTCCAAAACATGAACTTGCATCATTAGTTTTATCAAAAG
TATATTACAATTTAAGTGATTTCCCAAATTCAATGGAATATGCGTTATCAGCTGGTTCTT
TATTTAATGTTTTATCAAAGAGTGAATACATTGAAACACTTTTATATAAATTTATTGATG
AATATATTAAATTAAGAACATCCACAAATAAAGACACTGTTATCAATCCACATCTCGAAT
CAATTGTAATGGGAATGTTTGATAGATGTTTCAAGGAAGGATCATATAAACAGGCATTAG
GTATTGCTATTGAAGCAAGAAGATTAGATATAATTGAAAAAGCAATTTCACAATCTGGTA
ATGTAAATAGTATGCTCTCTTATTGTCTTCACATTTGTAATGTTTCAGTAAACAATCGTC
ATTTCCGTCATAGTGTTTTAGG----------GAGCTGCCGTCACTTGTATTGGTTTCGT
TTTGTCCAGACAACCAGAGAAATGTCCAAAGGCAATCGCTTTGTTGGCCGAAAGTTATAA
CCCACACGTTCGTTATGGTGCCGCTTTCGCTTTGGGTATTGCATGTGCTGGTACCGGTCA
AAGAGATGCTTTGGAAATTTTAAAATCACTCACCACCGATAGTGTTGGTTACGTTAAACA
AGCCGCTTGGATCTCCATGGCTATGGTATTGATTCAAACCAGTAAAGAGTTGGTACCAGA
GGCTGAAACCGCCAGAAAATTATTCGCCACTTGTATCAGTGATAAACGTGAGGATTCAAT
GTCCAAGTTTGGTGCTGTATTAGTATTTGGTGTCATTGATGCCGGTGGTAGAAACTCTAC
CATTCAATTACATTCACCAAGTGGTCACAAGAATATGAATGCTATCGTTGGTATTGCTGG
TTTCCTTCAATTTTGGTATTGGTTCCCAATGACTCACTTTATGGGCTTAGCGTTAACTCC
AACCTCTATCATTGGTCTCAACAAAAACTTGGAAATGCCAGTTTTCACTTTCAAATCCAA
TTGCAGACCATCACTCTTTGCTTATCCACCTGAAACCAAACCATCCACCACAAGCTCAAC
CAATAAAATTGAAACAGCCATCCTCTCCTACAGTAGAAAGAATAAACTTCAAAGTTCTCG
TTCCGCTATGAATATTGATCAAGATGTNAAAAGAAAGAAAAAGAGGAGAAAGAAGCCAAA
NAAAAAGAAGCCAAA
Length of connected seq. 1385
Full length Seq ID -
Full length Seq. -
Length of full length seq. -