>VHD261 (VHD261Q) /CSM/VH/VHD2-C/VHD261Q.Seq.d/
ATAAACCATTGTGATATTACAAACATATAATTTTTTAAAATGCCTTTAAACCTTGTTGCT
AGAAAATCATTAAGAGATAATGAAGAACACTTAAATAAAGCACATGAAGAAATCAAAAAT
GCTTTAAATGGTGAAGAATGGATTATTGAATTTGATTGGGATGCCATTTTCGATAAAGTT
GATGAACATGTTAAAAAACAATTAGGTGAAGTATTTTATAAAAATTTATGTCCAAATATT
AGTAAATGTATTGTAAATGCATCAAAAGATGAATTAACTAAAGAATCAATCATTAATGCA
AATACTGCTAAAAAGATTGTATTAATTGTTAATGAAGATGCCAAGAATTCATCCTATTGG
AAGTATGCATTTAATGGTGGTCAATTAAATCTTTTATTCAAGAAAGGTTGTAATAATATT
ACTGAAGCTGGTAATTTCGAATTATATAAAGTGATTCCAAGTGAAGGTGCTTATAGTTTA
CCAACTCGTCTTAATATGAAAAAGAATCAAGAAAGATTTGAACTTGCATTCGAAAGAATT
AAAGTAGTTACCAGXXXXXXXXXXCCTTTAAATCAATTNGAAAATNTCTGATAATGCCAA
TTTCGATTTCATTAAAGTCTTNCCAGTCCCGGNGTTTTNTCATTAGCTGCTAAAATCAAT
TTGAAAGAGANCCAAGAGAAATTCGATACNGCTTTTGAAAGAATTAAAGAGGTCACTAAA
GTAGATTGGTCCTATGATGAGCAATCATTGGAAACTGTTTATCCAGCACTTGAAGAAAGA
AATAAAGAAAGAATTGGTGACTTATTCCAAGAGATTATTAAATATGTCGCTGATAATATC
GTTAAACGTTGTAAAGAGGATATGGTTTTAGAAAGTTTCCTCGAAGCAACTTCAAATGCA
AAGATTGTTTTCCGTCACAATGCCAAAGCAAACGGTTATTGGAATTGGAGTTTTGAAAAC
AATGATTTAGTAATCACCTTCAAATCAATTTGCAATGTTAGTGATAATGCAAACTTTGAT
TTCATTAAAATTTTACCATCACCAGGTGTACTCACTTTAGCCTCTAGAATCAATTTGAGA
GAGAATCAAGAGAAAATCAATGAATCTTTCGAAAAGATTAAAGAAGTCTTGGGTAATGAT
TGGACTTATGATGAATCTTCAATCGAACAAGTTTATCCAAAATTAGAAGAAAATAATAAA
CCACGTGTTGGTGATGTCTTTGCTGAAATCATTCGTTACATCAGTCAAAATATCGTTAAA
AGATGTAAAGATGATGATATGGTCAAAGAAGGTTTCGTTGAAGCAACTCAAAATTGTAAA
ATCGTCTTCCAATTTGTTGAAAAACAAAGTTCTTATTGGGTTTGGAAATTCGATGGTGGT
AATTTAGTCGTATCATTCAAATCAATTTGTAATACTAGTGATAATGCAAATTTCAATTTT
NAAGCTCTCCTTTAAAATTAANAAAAAAA

inhcditni*FFKMPLNLVARKSLRDNEEHLNKAHEEIKNALNGEEWIIEFDWDAIFDKV
DEHVKKQLGEVFYKNLCPNISKCIVNASKDELTKESIINANTAKKIVLIVNEDAKNSSYW
KYAFNGGQLNLLFKKGCNNITEAGNFELYKVIPSEGAYSLPTRLNMKKNQERFELAFERI
KVVT---

---FKSIXKXLIMPISISLKSXQSRXFXISC*nqferxpreiryxf*kn*rgh*srlvl*
*aiignclsst*rkk*rknw*liprdy*icr**yr*tl*rgygfrkfprsnfkckdcfps
qcqskrllelef*kq*fsnhlqinlqc***ckl*fh*nftitrcthfsl*nqferesren
q*ifrkd*rslg**ldl**ifnrtslskirrk**ttcw*clc*nhslhqskyr*km*r**
ygqrrfr*snskl*nrlpic*ktkfllgleirww*fsriiqinl*y***ckfqfxssplk
lxkk

Frame A:
inhcditni*FFKMPLNLVARKSLRDNEEHLNKAHEEIKNALNGEEWIIEFDWDAIFDKV
DEHVKKQLGEVFYKNLCPNISKCIVNASKDELTKESIINANTAKKIVLIVNEDAKNSSYW
KYAFNGGQLNLLFKKGCNNITEAGNFELYKVIPSEGAYSLPTRLNMKKNQERFELAFERI
KVVT---

---plnqxenx**cqfrfh*slxspgvxslaakinlkexqekfdtaferikevtkvdwsy
deqsletvypaleernkerigdlfqeiikyvadnivkrckedmvlesfleatsnakivfr
hnakangywnwsfenndlvitfksicnvsdnanfdfikilpspgvltlasrinlrenqek
inesfekikevlgndwtydessieqvypkleennkprvgdvfaeiiryisqnivkrckdd
dmvkegfveatqnckivfqfvekqssywvwkfdggnlvvsfksicntsdnanfnfxall*
n*xk

Frame B:
*tivilqtynflkcl*tlllenh*eimknt*ikhmkkskml*mvkngllnligmpfsikl
mnmlknn*vkyfikiyvqilvnvl*mhqkmn*lknqslmqillkrly*llmkmprihpig
smhlmvvn*ifysrkvviillklvisnyik*fqvkvlivyqlvli*krikkdlnlhskel
k*lp---

---l*inxkxsdnanfdfikvxpvpxfxh*llksi*krxkrnsixllkelkrslk*igpm
msnhwklfiqhlkkeikkelvtyskrllnmsliislnvvkriwf*kvsskqlqmqrlfsv
tmpkqtvigigvlktmi**spsnqfamlvimqtlislkfyhhqvysl*plesi*erikrk
smnlskrlkkswvmiglmmnlqsnkfiqn*kkiinhvlvmsllksfvtsvkislkdvkmm
iwskkvslkqlkivksssnllknkvligfgnsmvvi*syhsnqfvilvimqisixklsfk
ixkk

Frame C:
kpl*yykhiif*nafkpcc*kiikr**rtlk*st*rnqkcfkw*rmdy*i*lgchfr*s*
*tc*ktir*sil*kfmsky**myckcikr*in*rinh*ckyc*kdcinc**rcqefille
vci*wwsiksfiqerl**yy*sw*frii*sdsk*rcl*ftnss*yekesrki*tcirkn*
ssyq---

---FKSIXKXLIMPISISLKSXQSRXFXISC*nqferxpreiryxf*kn*rgh*srlvl*
*aiignclsst*rkk*rknw*liprdy*icr**yr*tl*rgygfrkfprsnfkckdcfps
qcqskrllelef*kq*fsnhlqinlqc***ckl*fh*nftitrcthfsl*nqferesren
q*ifrkd*rslg**ldl**ifnrtslskirrk**ttcw*clc*nhslhqskyr*km*r**
ygqrrfr*snskl*nrlpic*ktkfllgleirww*fsriiqinl*y***ckfqfxssplk
lxkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHD261 (VHD261Q) /CSM/VH/VHD2-C/VHD261Q.Seq.d/                       2785   0.0
VHA337 (VHA337Q) /CSM/VH/VHA3-B/VHA337Q.Seq.d/                       1647   0.0
VHJ523 (VHJ523Q) /CSM/VH/VHJ5-A/VHJ523Q.Seq.d/                       1645   0.0
VHC827 (VHC827Q) /CSM/VH/VHC8-B/VHC827Q.Seq.d/                       1645   0.0
VHJ560 (VHJ560Q) /CSM/VH/VHJ5-C/VHJ560Q.Seq.d/                       1641   0.0
VHD763 (VHD763Q) /CSM/VH/VHD7-C/VHD763Q.Seq.d/                       1633   0.0
VHO667 (VHO667Q) /CSM/VH/VHO6-C/VHO667Q.Seq.d/                       1629   0.0
VHP414 (VHP414Q) /CSM/VH/VHP4-A/VHP414Q.Seq.d/                       1622   0.0
VHO859 (VHO859Q) /CSM/VH/VHO8-C/VHO859Q.Seq.d/                       1622   0.0
VHC489 (VHC489Q) /CSM/VH/VHC4-D/VHC489Q.Seq.d/                       1618   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AE014817|AE014817.1 Plasmodium falciparum 3D7 chromosome 14 section 2 of 13 of the complete sequence.    36   0.012  11
AC117081|AC117081.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    48   0.024  10
AC098590|AC098590.3 Homo sapiens BAC clone RP11-324J13 from 4, complete sequence.    42   0.032  5
AE017263|AE017263.1 Mesoplasma florum L1 complete genome.          36   0.065  20
AC133975|AC133975.2 Rattus norvegicus clone CH230-10P19, WORKING DRAFT SEQUENCE.    50   0.18   1
AC122629|AC122629.4 Rattus norvegicus clone CH230-102A4, WORKING DRAFT SEQUENCE, 2 unordered pieces.    50   0.18   1
AC121167|AC121167.4 Rattus norvegicus clone CH230-108M4, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    50   0.18   1
AC114143|AC114143.4 Rattus norvegicus clone CH230-141A22, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    50   0.18   1
CT458730|CT458730.1 Sus scrofa genomic clone CH242-523I4, genomic survey sequence.    50   0.18   1
AC131481|AC131481.5 Rattus norvegicus clone CH230-7F8, WORKING DRAFT SEQUENCE, 3 unordered pieces.    46   0.27   9

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117081_29(AC117081|pid:none) Dictyostelium discoideum chromoso...   182   3e-44
AC117081_21(AC117081|pid:none) Dictyostelium discoideum chromoso...   181   5e-44
AL844502_159(AL844502|pid:none) Plasmodium falciparum 3D7 chromo...    44   0.011
(P43040) RecName: Full=Uncharacterized protein MCAP_0005; AltNam...    40   0.16
AE017245_484(AE017245|pid:none) Mycoplasma synoviae 53, complete...    39   0.48
CP001581_3540(CP001581|pid:none) Clostridium botulinum A2 str. K...    37   1.4
AY587609_1(AY587609|pid:none) Ascaridia galli lipid binding prot...    37   1.8
CP000383_328(CP000383|pid:none) Cytophaga hutchinsonii ATCC 3340...    37   1.8
AF206632_1(AF206632|pid:none) Plasmodium falciparum isolate FCC1...    37   1.8
CP001146_1446(CP001146|pid:none) Dictyoglomus thermophilum H-6-1...    37   1.8

 psg: 0.26  gvh: 0.20  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.39  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for VHD261 is nuc

>VHD261F.Seq
ATAAACCATTGTGATATTACAAACATATAATTTTTTAAAATGCCTTTAAACCTTGTTGCT
AGAAAATCATTAAGAGATAATGAAGAACACTTAAATAAAGCACATGAAGAAATCAAAAAT
GCTTTAAATGGTGAAGAATGGATTATTGAATTTGATTGGGATGCCATTTTCGATAAAGTT
GATGAACATGTTAAAAAACAATTAGGTGAAGTATTTTATAAAAATTTATGTCCAAATATT
AGTAAATGTATTGTAAATGCATCAAAAGATGAATTAACTAAAGAATCAATCATTAATGCA
AATACTGCTAAAAAGATTGTATTAATTGTTAATGAAGATGCCAAGAATTCATCCTATTGG
AAGTATGCATTTAATGGTGGTCAATTAAATCTTTTATTCAAGAAAGGTTGTAATAATATT
ACTGAAGCTGGTAATTTCGAATTATATAAAGTGATTCCAAGTGAAGGTGCTTATAGTTTA
CCAACTCGTCTTAATATGAAAAAGAATCAAGAAAGATTTGAACTTGCATTCGAAAGAATT
AAAGTAGTTACCAGNNNNNNNNNN

>VHD261Z.Seq
NNNNNNNNNNCCTTTAAATCAATTNGAAAATNTCTGATAATGCCAATTTCGATTTCATTA
AAGTCTTNCCAGTCCCGGNGTTTTNTCATTAGCTGCTAAAATCAATTTGAAAGAGANCCA
AGAGAAATTCGATACNGCTTTTGAAAGAATTAAAGAGGTCACTAAAGTAGATTGGTCCTA
TGATGAGCAATCATTGGAAACTGTTTATCCAGCACTTGAAGAAAGAAATAAAGAAAGAAT
TGGTGACTTATTCCAAGAGATTATTAAATATGTCGCTGATAATATCGTTAAACGTTGTAA
AGAGGATATGGTTTTAGAAAGTTTCCTCGAAGCAACTTCAAATGCAAAGATTGTTTTCCG
TCACAATGCCAAAGCAAACGGTTATTGGAATTGGAGTTTTGAAAACAATGATTTAGTAAT
CACCTTCAAATCAATTTGCAATGTTAGTGATAATGCAAACTTTGATTTCATTAAAATTTT
ACCATCACCAGGTGTACTCACTTTAGCCTCTAGAATCAATTTGAGAGAGAATCAAGAGAA
AATCAATGAATCTTTCGAAAAGATTAAAGAAGTCTTGGGTAATGATTGGACTTATGATGA
ATCTTCAATCGAACAAGTTTATCCAAAATTAGAAGAAAATAATAAACCACGTGTTGGTGA
TGTCTTTGCTGAAATCATTCGTTACATCAGTCAAAATATCGTTAAAAGATGTAAAGATGA
TGATATGGTCAAAGAAGGTTTCGTTGAAGCAACTCAAAATTGTAAAATCGTCTTCCAATT
TGTTGAAAAACAAAGTTCTTATTGGGTTTGGAAATTCGATGGTGGTAATTTAGTCGTATC
ATTCAAATCAATTTGTAATACTAGTGATAATGCAAATTTCAATTTTNAAGCTCTCCTTTA
AAATTAANAAAAAAA

>VHD261P.Seq
ATAAACCATTGTGATATTACAAACATATAATTTTTTAAAATGCCTTTAAACCTTGTTGCT
AGAAAATCATTAAGAGATAATGAAGAACACTTAAATAAAGCACATGAAGAAATCAAAAAT
GCTTTAAATGGTGAAGAATGGATTATTGAATTTGATTGGGATGCCATTTTCGATAAAGTT
GATGAACATGTTAAAAAACAATTAGGTGAAGTATTTTATAAAAATTTATGTCCAAATATT
AGTAAATGTATTGTAAATGCATCAAAAGATGAATTAACTAAAGAATCAATCATTAATGCA
AATACTGCTAAAAAGATTGTATTAATTGTTAATGAAGATGCCAAGAATTCATCCTATTGG
AAGTATGCATTTAATGGTGGTCAATTAAATCTTTTATTCAAGAAAGGTTGTAATAATATT
ACTGAAGCTGGTAATTTCGAATTATATAAAGTGATTCCAAGTGAAGGTGCTTATAGTTTA
CCAACTCGTCTTAATATGAAAAAGAATCAAGAAAGATTTGAACTTGCATTCGAAAGAATT
AAAGTAGTTACCAG----------CCTTTAAATCAATTNGAAAATNTCTGATAATGCCAA
TTTCGATTTCATTAAAGTCTTNCCAGTCCCGGNGTTTTNTCATTAGCTGCTAAAATCAAT
TTGAAAGAGANCCAAGAGAAATTCGATACNGCTTTTGAAAGAATTAAAGAGGTCACTAAA
GTAGATTGGTCCTATGATGAGCAATCATTGGAAACTGTTTATCCAGCACTTGAAGAAAGA
AATAAAGAAAGAATTGGTGACTTATTCCAAGAGATTATTAAATATGTCGCTGATAATATC
GTTAAACGTTGTAAAGAGGATATGGTTTTAGAAAGTTTCCTCGAAGCAACTTCAAATGCA
AAGATTGTTTTCCGTCACAATGCCAAAGCAAACGGTTATTGGAATTGGAGTTTTGAAAAC
AATGATTTAGTAATCACCTTCAAATCAATTTGCAATGTTAGTGATAATGCAAACTTTGAT
TTCATTAAAATTTTACCATCACCAGGTGTACTCACTTTAGCCTCTAGAATCAATTTGAGA
GAGAATCAAGAGAAAATCAATGAATCTTTCGAAAAGATTAAAGAAGTCTTGGGTAATGAT
TGGACTTATGATGAATCTTCAATCGAACAAGTTTATCCAAAATTAGAAGAAAATAATAAA
CCACGTGTTGGTGATGTCTTTGCTGAAATCATTCGTTACATCAGTCAAAATATCGTTAAA
AGATGTAAAGATGATGATATGGTCAAAGAAGGTTTCGTTGAAGCAACTCAAAATTGTAAA
ATCGTCTTCCAATTTGTTGAAAAACAAAGTTCTTATTGGGTTTGGAAATTCGATGGTGGT
AATTTAGTCGTATCATTCAAATCAATTTGTAATACTAGTGATAATGCAAATTTCAATTTT
NAAGCTCTCCTTTAAAATTAANAAAAAAA