VHD247
Library VH
(Link to library)
Clone ID VHD247
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15687-1
Original site URL
Representative seq. ID VHD247P
(Link to Original site)
Representative DNA sequence
>VHD247 (VHD247Q) /CSM/VH/VHD2-B/VHD247Q.Seq.d/
TATACCTTTGATGCATTTGAAGATGGTTCATCTNAATTGGNTGGAGAGCANCANTNAACT
ANNCTTAATCAATNTGCAGTTGATTATGCACAACAAATTTGGAANATAGAAGAAGCATTA
GATGAAACATTAAATGAAGNATGGGATATAAATATAGATCCAGGTTCAATTTATAATAAA
CCTCATGAACAATTAGATTTAATTGANTTGGTTNAAACTGATCATANAATTNTCAATACA
GTANTATTAGTATTCTCTTCAATTTGTAATCANACTAGAATTTTAAAAGAAACAGCAGAA
AGTANATTTTATTCACCATTAACAGNATTNGGAGAGATTACAGGTGAATCATCXXXXXXX
XXXTTTTTAGATCATTTTAGACTTTTAATCACTCATATTGGTAATGCTATGGGTTATATT
AGATTGGTCAGATCCGGTGGTTTACACTATTGTAGTAATGCTATCAAATTCGTACCAGAC
TTGAAAAAGATTCCAAAATTCCAAGATTTAACCTCAAAAGATGCCCTCTCACCTGAAACA
ATTCAAGCTAGTACCAATTTGGATTCAATCATTCATAATCTTTCAAATAATTTATCAGAG
GGTACTGAATACTTTAAGATGTTGGTAAACGTTTTCGCTACAGAGTTTCGAAATATCGCT
AATCAACATTTAAAGAATTTNTATATCATCGTACCTGCCTTGGCCTCAAATTACATCGAT
CATATGATCAATAGTAAAGATAAACTCTTTAAGAAATCAAAAGCAATCGGTGCTGAAGCT
TTATTATTCACTGATGATGGCTTTGCAATTGGTTTGGCTTATATCTTAAAATTATTAGAT
CAAAATAAAGATTTCGATTCTCTTCATTGGTTCGATCGTATTCAATTGAAATGTGAAACT
GATCAAAAGAGAATGTTGGCTGAAGCAAATGCAAAAGGTATCAAAGAGGATCAAAATCAT
TTAGCAATTAAAAAGATTCAAAATTTCCAACAAGCAATATGAATTATTTAAATATTCTTT
CTCGGTTCAAGAATT
sequence update 2002.10.25
Translated Amino Acid sequence
YTFDAFEDGSSXLXGEXXXTXLNQXAVDYAQQIWXIEEALDETLNEXWDINIDPGSIYNK
PHEQLDLIXLVXTDHXIXNTVXLVFSSICNXTRILKETAESXFYSPLTXXGEITGES---

---FLDHFRLLITHIGNAMGYIRLVRSGGLHYCSNAIKFVPDLKKIPKFQDLTSKDALSP
ETIQASTNLDSIIHNLSNNLSEGTEYFKMLVNVFATEFRNIANQHLKNXYIIVPALASNY
IDHMINSKDKLFKKSKAIGAEALLFTDDGFAIGLAYILKLLDQNKDFDSLHWFDRIQLKC
ETDQKRMLAEANAKGIKEDQNHLAIKKIQNFQQAI*ii*ifflgsri


Translated Amino Acid sequence (All Frames)
Frame A:
YTFDAFEDGSSXLXGEXXXTXLNQXAVDYAQQIWXIEEALDETLNEXWDINIDPGSIYNK
PHEQLDLIXLVXTDHXIXNTVXLVFSSICNXTRILKETAESXFYSPLTXXGEITGES---

---FLDHFRLLITHIGNAMGYIRLVRSGGLHYCSNAIKFVPDLKKIPKFQDLTSKDALSP
ETIQASTNLDSIIHNLSNNLSEGTEYFKMLVNVFATEFRNIANQHLKNXYIIVPALASNY
IDHMINSKDKLFKKSKAIGAEALLFTDDGFAIGLAYILKLLDQNKDFDSLHWFDRIQLKC
ETDQKRMLAEANAKGIKEDQNHLAIKKIQNFQQAI*ii*ifflgsri

Frame B:
iplmhlkmvhlnwxesxxxlxlinxqlimhnkfgx*kkh*mkh*mkxgi*i*iqvqfiin
lmnn*i*lxwxkliixxsiqxy*yslqfvixlef*kkqqkvxfihh*qxxerlqvnh---

---f*iildf*slilvmlwvildwsdpvvytivvmlsnsyqt*krfqnski*pqkmpshl
kqfklvpiwiqsfiifqiiyqrvlntlrcw*tfslqsfeislini*rixissylpwpqit
sii*sivkinslrnqkqsvlklyyslmmalqlvwlis*ny*ikikisilfigsivfn*nv
klikrecwlkqmqkvskrikii*qlkrfkisnkqyelfkysfsvqe

Frame C:
yl*ci*rwfixigwraxxnxx*sxcs*lcttnlexrrsir*nik*xmgykyrsrfnl**t
s*tirfn*xgxn*sxnxqysxisilfnl*sx*nfkrnsrkxilftinxixrdyr*ii---

---frsf*tfnhsyw*cygly*igqirwftll**cyqirtrlekdskiprfnlkrcplt*
nnss*yqfgfnhs*sfk*firgy*il*dvgkrfryrvskyr*stfkefxyhrtclglklh
rsydq**r*tl*eiksnrc*sfiih**wlcnwfglylkiirsk*rfrfsslvrsysiem*
n*skenvg*skckryqrgsksfsn*kdskfptsnmnylnilsrfkn

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHD247 (VHD247Q) /CSM/VH/VHD2-B/VHD247Q.Seq.d/ 1873 0.0
CHL470 (CHL470Q) /CSM/CH/CHL4-C/CHL470Q.Seq.d/ 1810 0.0
VHC161 (VHC161Q) /CSM/VH/VHC1-C/VHC161Q.Seq.d/ 1310 0.0
AHC187 (AHC187Q) /CSM/AH/AHC1-D/AHC187Q.Seq.d/ 1304 0.0
VHK538 (VHK538Q) /CSM/VH/VHK5-B/VHK538Q.Seq.d/ 1298 0.0
AHL641 (AHL641Q) /CSM/AH/AHL6-B/AHL641Q.Seq.d/ 1298 0.0
CHG465 (CHG465Q) /CSM/CH/CHG4-C/CHG465Q.Seq.d/ 1296 0.0
AHA326 (AHA326Q) /CSM/AH/AHA3-B/AHA326Q.Seq.d/ 1294 0.0
VHB619 (VHB619Q) /CSM/VH/VHB6-A/VHB619Q.Seq.d/ 1291 0.0
VHB189 (VHB189Q) /CSM/VH/VHB1-D/VHB189Q.Seq.d/ 1291 0.0

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BY464171|BY464171.1 Mus musculus 15 days pregnant adult female amnion cDNA, RIKENsequence. 42 0.027 2
BU746157|BU746157.1 CH3#002_C07T7 Canine heart normalized cDNA Library in pBluescript Canis familiaris cDNA clone CH3#002_C07 5', mRNA sequence. 38 0.034 2
AK113047|AK113047.1 Ciona intestinalis cDNA, clone:ciad002a21, full insert sequence. 48 0.087 2
BX101185|BX101185.1 RZPD Homo sapiens cDNA clone IMAGp998E05583 = IMAGE:266092 5' EST. 40 0.11 2
EB374061|EB374061.1 nbc11a04.y1 Rabbit trigeminal nerve. Unnormalized (nbc) Oryctolagus cuniculus cDNA clone nbc11a04 5', mRNA sequence. 40 0.11 2
BM802928|BM802928.1 AGENCOURT_6457255 NIH_MGC_88 Homo sapiens cDNA clone IMAGE:5560300 5', mRNA sequence. 40 0.16 2
BC040936|BC040936.1 Homo sapiens, clone IMAGE:5139212, mRNA, partial cds. 40 0.32 2
DQ030683|DQ030683.1 Homo sapiens HC440 gene, VIRTUAL TRANSCRIPT, partial sequence, genomic survey sequence. 40 0.48 2
BC104994|BC104994.1 Homo sapiens KIAA1033, mRNA (cDNA clone MGC:132654 IMAGE:8143997), complete cds. 40 0.50 2
BC104992|BC104992.1 Homo sapiens KIAA1033, mRNA (cDNA clone MGC:132652 IMAGE:8143995), complete cds. 40 0.50 2
dna update 2007. 5.10
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54R74) RecName: Full=UPF0681 protein; 400 e-111
AB028956_1(AB028956|pid:none) Homo sapiens mRNA for KIAA1033 pro... 213 7e-54
BC143373_1(BC143373|pid:none) Homo sapiens KIAA1033, mRNA (cDNA ... 213 7e-54
BC040936_1(BC040936|pid:none) Homo sapiens KIAA1033, mRNA (cDNA ... 213 7e-54
BC020314_1(BC020314|pid:none) Mus musculus RIKEN cDNA A230046K03... 211 4e-53
(Q3UMB9) RecName: Full=UPF0681 protein KIAA1033; 211 4e-53
AK161247_1(AK161247|pid:none) Mus musculus adult male testis cDN... 211 4e-53
AK145000_1(AK145000|pid:none) Mus musculus mammary gland RCB-052... 211 4e-53
BC110850_1(BC110850|pid:none) Homo sapiens KIAA1033, mRNA (cDNA ... 159 2e-37
AX882617_1(AX882617|pid:none) Sequence 17522 from Patent EP10746... 154 4e-36
protein update 2009. 6.28
PSORT

psg: 0.75 gvh: 0.35 alm: 0.37 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: cytoplasmic
32.0 %: nuclear
4.0 %: mitochondrial
4.0 %: vesicles of secretory system

>> prediction for VHD247 is cyt

5' end seq. ID VHD247F
5' end seq.
>VHD247F.Seq
TATACCTTTGATGCATTTGAAGATGGTTCATCTNAATTGGNTGGAGAGCANCANTNAACT
ANNCTTAATCAATNTGCAGTTGATTATGCACAACAAATTTGGAANATAGAAGAAGCATTA
GATGAAACATTAAATGAAGNATGGGATATAAATATAGATCCAGGTTCAATTTATAATAAA
CCTCATGAACAATTAGATTTAATTGANTTGGTTNAAACTGATCATANAATTNTCAATACA
GTANTATTAGTATTCTCTTCAATTTGTAATCANACTAGAATTTTAAAAGAAACAGCAGAA
AGTANATTTTATTCACCATTAACAGNATTNGGAGAGATTACAGGTGAATCATCNNNNNNN
NNN
Length of 5' end seq. 363
3' end seq. ID VHD247Z
3' end seq.
>VHD247Z.Seq
NNNNNNNNNNTTTTTAGATCATTTTAGACTTTTAATCACTCATATTGGTAATGCTATGGG
TTATATTAGATTGGTCAGATCCGGTGGTTTACACTATTGTAGTAATGCTATCAAATTCGT
ACCAGACTTGAAAAAGATTCCAAAATTCCAAGATTTAACCTCAAAAGATGCCCTCTCACC
TGAAACAATTCAAGCTAGTACCAATTTGGATTCAATCATTCATAATCTTTCAAATAATTT
ATCAGAGGGTACTGAATACTTTAAGATGTTGGTAAACGTTTTCGCTACAGAGTTTCGAAA
TATCGCTAATCAACATTTAAAGAATTTNTATATCATCGTACCTGCCTTGGCCTCAAATTA
CATCGATCATATGATCAATAGTAAAGATAAACTCTTTAAGAAATCAAAAGCAATCGGTGC
TGAAGCTTTATTATTCACTGATGATGGCTTTGCAATTGGTTTGGCTTATATCTTAAAATT
ATTAGATCAAAATAAAGATTTCGATTCTCTTCATTGGTTCGATCGTATTCAATTGAAATG
TGAAACTGATCAAAAGAGAATGTTGGCTGAAGCAAATGCAAAAGGTATCAAAGAGGATCA
AAATCATTTAGCAATTAAAAAGATTCAAAATTTCCAACAAGCAATATGAATTATTTAAAT
ATTCTTTCTCGGTTCAAGAATT
Length of 3' end seq. 682
Connected seq. ID VHD247P
Connected seq.
>VHD247P.Seq
TATACCTTTGATGCATTTGAAGATGGTTCATCTNAATTGGNTGGAGAGCANCANTNAACT
ANNCTTAATCAATNTGCAGTTGATTATGCACAACAAATTTGGAANATAGAAGAAGCATTA
GATGAAACATTAAATGAAGNATGGGATATAAATATAGATCCAGGTTCAATTTATAATAAA
CCTCATGAACAATTAGATTTAATTGANTTGGTTNAAACTGATCATANAATTNTCAATACA
GTANTATTAGTATTCTCTTCAATTTGTAATCANACTAGAATTTTAAAAGAAACAGCAGAA
AGTANATTTTATTCACCATTAACAGNATTNGGAGAGATTACAGGTGAATCATC-------
---TTTTTAGATCATTTTAGACTTTTAATCACTCATATTGGTAATGCTATGGGTTATATT
AGATTGGTCAGATCCGGTGGTTTACACTATTGTAGTAATGCTATCAAATTCGTACCAGAC
TTGAAAAAGATTCCAAAATTCCAAGATTTAACCTCAAAAGATGCCCTCTCACCTGAAACA
ATTCAAGCTAGTACCAATTTGGATTCAATCATTCATAATCTTTCAAATAATTTATCAGAG
GGTACTGAATACTTTAAGATGTTGGTAAACGTTTTCGCTACAGAGTTTCGAAATATCGCT
AATCAACATTTAAAGAATTTNTATATCATCGTACCTGCCTTGGCCTCAAATTACATCGAT
CATATGATCAATAGTAAAGATAAACTCTTTAAGAAATCAAAAGCAATCGGTGCTGAAGCT
TTATTATTCACTGATGATGGCTTTGCAATTGGTTTGGCTTATATCTTAAAATTATTAGAT
CAAAATAAAGATTTCGATTCTCTTCATTGGTTCGATCGTATTCAATTGAAATGTGAAACT
GATCAAAAGAGAATGTTGGCTGAAGCAAATGCAAAAGGTATCAAAGAGGATCAAAATCAT
TTAGCAATTAAAAAGATTCAAAATTTCCAACAAGCAATATGAATTATTTAAATATTCTTT
CTCGGTTCAAGAATT
Length of connected seq. 1025
Full length Seq ID -
Full length Seq. -
Length of full length seq. -