VHD246
Library VH
(Link to library)
Clone ID VHD246
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11170-1
Original site URL
Representative seq. ID VHD246P
(Link to Original site)
Representative DNA sequence
>VHD246 (VHD246Q) /CSM/VH/VHD2-B/VHD246Q.Seq.d/
AATTTCAAATTAACACGCACATATCATTAAAATATTAATATAATCCATCAAGAACTTATA
TTTATTTATTTATAATATTTTTTTAAGAGGATTACAATACACTATTAAAGTGTTGTATTA
GTATAAAAAAAAAAXXXXXXXXXXCAAATGATTTATCATTTTAGGTGGTGGTGGTGGTGG
TGGTNAAGTTCAAGCACCAGTTAATAAAGTTGTTGTATTTGGTGGTGATAGATCACAAGC
AATTCAAATTAGTGGAGCATTTACAAGATTCCAAGGTAGAATTAATTTAGAATTAAATCT
TTTGAATACAAGTCAACAAGGTATGTCAAAATTCAAGATTCAATTTTATCAAAATAGTTT
TGGTATTTCACCAGCTGATCAAATCTTATCATGTGGTGCTATTGAAGTAGGCCAAAGCAC
TGATGTCACAATTCCAATCTCATGCAATGGTCAAATCTCAAATCCATTGAATCCAGTCAT
TGATATGGCAATGATGGTATTACCAAGTCAAGAGAGATTCTACTTTAAGATGAATTTCCC
ATTACTTTGTCTATTGACAGAAACTGGTCGTCTCGATCGTGAATCTTATTTATCCATGTG
GAAATCAATTCCAGAATCAAATGAACGTTCAGTTGAAATTCAAGTACGTTTACCACATGT
AGATGTTGACTCTATCCTTCGTCGTTTAAATAGTAAGAATATCTTTGAAATCGTTANAAA
NAAAGNTNCAACTCAAGA
sequence update 2002.10.25
Translated Amino Acid sequence
fqinthislky*ynpsrtyiylfiiff*EDYNTLLKCCISIKKK---

---QMIYHFRWWWWWWXSSSTS**scciww**itsnsn*wsiykipr*n*friksfeyks
tryvkiqdsilsk*fwyfts*snlimwcy*srpkh*chnsnlmqwsnlksiessh*ygnd
gitksreill*defpitlsidrnwssrs*ilfihveinsrik*tfs*nsstfttcrc*ly
pssfk**eyl*nrxkxxxnsr


Translated Amino Acid sequence (All Frames)
Frame A:
nfkltrtyh*niniihqelifiyl*yffkritihy*svvlv*kk---

---QMIYHFRWWWWWWXSSSTS**scciww**itsnsn*wsiykipr*n*friksfeyks
tryvkiqdsilsk*fwyfts*snlimwcy*srpkh*chnsnlmqwsnlksiessh*ygnd
gitksreill*defpitlsidrnwssrs*ilfihveinsrik*tfs*nsstfttcrc*ly
pssfk**eyl*nrxkxxxnsr

Frame B:
isn*hahiikili*siknlylfiyniflrglqytikvly*ykkk---

---k*fiilgggggggxvqapvnkvvvfggdrsqaiqisgaftrfqgrinlelnllntsq
qgmskfkiqfyqnsfgispadqilscgaievgqstdvtipiscngqisnplnpvidmamm
vlpsqerfyfkmnfpllclltetgrldresylsmwksipesnersveiqvrlphvdvdsi
lrrlnsknifeivxxkxxtq

Frame C:
fqinthislky*ynpsrtyiylfiiff*EDYNTLLKCCISIKKK---

---ndlsf*vvvvvvvkfkhqlikllylvvidhkqfklvehlqdskveli*n*if*iqvn
kvcqnsrfnfikivlvfhqliksyhvvllk*akalmsqfqshamvksqih*iqsliwq*w
yyqvkrdstlr*ishyfvy*qklvvsivnliypcgnqfqnqmnvqlkfkyvyhm*mltls
fvv*ivrislkslxxkxqlk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHP238 (VHP238Q) /CSM/VH/VHP2-B/VHP238Q.Seq.d/ 1053 0.0
VHN430 (VHN430Q) /CSM/VH/VHN4-B/VHN430Q.Seq.d/ 1053 0.0
VHM895 (VHM895Q) /CSM/VH/VHM8-D/VHM895Q.Seq.d/ 1053 0.0
VHM229 (VHM229Q) /CSM/VH/VHM2-B/VHM229Q.Seq.d/ 1053 0.0
VHD246 (VHD246Q) /CSM/VH/VHD2-B/VHD246Q.Seq.d/ 1053 0.0
VHC611 (VHC611Q) /CSM/VH/VHC6-A/VHC611Q.Seq.d/ 1053 0.0
VHB374 (VHB374Q) /CSM/VH/VHB3-D/VHB374Q.Seq.d/ 1053 0.0
VHA862 (VHA862Q) /CSM/VH/VHA8-C/VHA862Q.Seq.d/ 1053 0.0
SHL532 (SHL532Q) /CSM/SH/SHL5-B/SHL532Q.Seq.d/ 1053 0.0
SHJ703 (SHJ703Q) /CSM/SH/SHJ7-A/SHJ703Q.Seq.d/ 1053 0.0

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC187854|AC187854.2 Populus trichocarpa clone Pop1-11B14, complete sequence. 38 0.28 5
CX072513|CX072513.1 UCRCS08_28E10_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-28E10-J20-1-4.g, mRNA sequence. 46 1.4 1
CX072512|CX072512.1 UCRCS08_28E10_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-28E10-J20-1-5.b, mRNA sequence. 46 1.4 1
AC140642|AC140642.5 Macaca mulatta clone CH250-288A22, *** SEQUENCING IN PROGRESS ***. 46 1.4 1
ER400257|ER400257.1 1095349054847 Global-Ocean-Sampling_GS-34-01-01-1P5-1P8KB marine metagenome genomic clone 1061005430691 5', genomic survey sequence. 46 1.4 1
EJ807179|EJ807179.1 1093017468100 Global-Ocean-Sampling_GS-30-02-01-1P0-1P3KB marine metagenome genomic clone 1061002728084 5', genomic survey sequence. 46 1.4 1
EJ328016|EJ328016.1 1092963405361 Global-Ocean-Sampling_GS-28-01-01-1P6-2P0KB marine metagenome genomic clone 1061002327787 5', genomic survey sequence. 46 1.4 1
AC138052|AC138052.2 Felis catus clone RP86-222L20, WORKING DRAFT SEQUENCE, 2 ordered pieces. 38 1.7 3
DQ280172|DQ280172.1 Muntiacus muntjak vaginalis chromosome 3+X clone 09A2, *** SEQUENCING IN PROGRESS ***, 25 ordered pieces. 44 5.6 1
EK406240|EK406240.1 1095505004860 Global-Ocean-Sampling_GS-31-01-01-1P3-1P8KB marine metagenome genomic clone 1061005887983 5', genomic survey sequence. 44 5.6 1
dna update 2007. 5.10
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54X82) RecName: Full=AP-1 complex subunit beta; AltName: Full=... 351 2e-95
(P62944) RecName: Full=AP-2 complex subunit beta-1; AltName: Ful... 105 1e-21
CR860139_1(CR860139|pid:none) Pongo abelii mRNA; cDNA DKFZp469O1... 105 1e-21
(Q08DS7) RecName: Full=AP-1 complex subunit beta-1; AltName: Ful... 105 1e-21
AY341427_1(AY341427|pid:none) Homo sapiens beta adaptin subunit ... 105 1e-21
(P63009) RecName: Full=AP-2 complex subunit beta-1; AltName: Ful... 105 1e-21
BC012150_1(BC012150|pid:none) Homo sapiens, clone IMAGE:4558274,... 105 1e-21
AK304126_1(AK304126|pid:none) Homo sapiens cDNA FLJ55646 complet... 105 1e-21
CR749392_1(CR749392|pid:none) Homo sapiens mRNA; cDNA DKFZp781K0... 105 2e-21
AB462935_1(AB462935|pid:none) Synthetic construct DNA, clone: pF... 104 3e-21
protein update 2009. 6.28
PSORT

psg: 0.75 gvh: 0.38 alm: 0.54 top: 0.53 tms: 0.00 mit: 0.32 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: cytoplasmic
28.0 %: mitochondrial
28.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: peroxisomal

>> prediction for VHD246 is cyt

5' end seq. ID VHD246F
5' end seq.
>VHD246F.Seq
AATTTCAAATTAACACGCACATATCATTAAAATATTAATATAATCCATCAAGAACTTATA
TTTATTTATTTATAATATTTTTTTAAGAGGATTACAATACACTATTAAAGTGTTGTATTA
GTATAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 144
3' end seq. ID VHD246Z
3' end seq.
>VHD246Z.Seq
NNNNNNNNNNCAAATGATTTATCATTTTAGGTGGTGGTGGTGGTGGTGGTNAAGTTCAAG
CACCAGTTAATAAAGTTGTTGTATTTGGTGGTGATAGATCACAAGCAATTCAAATTAGTG
GAGCATTTACAAGATTCCAAGGTAGAATTAATTTAGAATTAAATCTTTTGAATACAAGTC
AACAAGGTATGTCAAAATTCAAGATTCAATTTTATCAAAATAGTTTTGGTATTTCACCAG
CTGATCAAATCTTATCATGTGGTGCTATTGAAGTAGGCCAAAGCACTGATGTCACAATTC
CAATCTCATGCAATGGTCAAATCTCAAATCCATTGAATCCAGTCATTGATATGGCAATGA
TGGTATTACCAAGTCAAGAGAGATTCTACTTTAAGATGAATTTCCCATTACTTTGTCTAT
TGACAGAAACTGGTCGTCTCGATCGTGAATCTTATTTATCCATGTGGAAATCAATTCCAG
AATCAAATGAACGTTCAGTTGAAATTCAAGTACGTTTACCACATGTAGATGTTGACTCTA
TCCTTCGTCGTTTAAATAGTAAGAATATCTTTGAAATCGTTANAAANAAAGNTNCAACTC
AAGA
Length of 3' end seq. 604
Connected seq. ID VHD246P
Connected seq.
>VHD246P.Seq
AATTTCAAATTAACACGCACATATCATTAAAATATTAATATAATCCATCAAGAACTTATA
TTTATTTATTTATAATATTTTTTTAAGAGGATTACAATACACTATTAAAGTGTTGTATTA
GTATAAAAAAAAAA----------CAAATGATTTATCATTTTAGGTGGTGGTGGTGGTGG
TGGTNAAGTTCAAGCACCAGTTAATAAAGTTGTTGTATTTGGTGGTGATAGATCACAAGC
AATTCAAATTAGTGGAGCATTTACAAGATTCCAAGGTAGAATTAATTTAGAATTAAATCT
TTTGAATACAAGTCAACAAGGTATGTCAAAATTCAAGATTCAATTTTATCAAAATAGTTT
TGGTATTTCACCAGCTGATCAAATCTTATCATGTGGTGCTATTGAAGTAGGCCAAAGCAC
TGATGTCACAATTCCAATCTCATGCAATGGTCAAATCTCAAATCCATTGAATCCAGTCAT
TGATATGGCAATGATGGTATTACCAAGTCAAGAGAGATTCTACTTTAAGATGAATTTCCC
ATTACTTTGTCTATTGACAGAAACTGGTCGTCTCGATCGTGAATCTTATTTATCCATGTG
GAAATCAATTCCAGAATCAAATGAACGTTCAGTTGAAATTCAAGTACGTTTACCACATGT
AGATGTTGACTCTATCCTTCGTCGTTTAAATAGTAAGAATATCTTTGAAATCGTTANAAA
NAAAGNTNCAACTCAAGA
Length of connected seq. 728
Full length Seq ID -
Full length Seq. -
Length of full length seq. -