VHD245
Library VH
(Link to library)
Clone ID VHD245
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16363-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VHD245 (VHD245Q) /CSM/VH/VHD2-B/VHD245Q.Seq.d/
XXXXXXXXXXGTTTAGCAAATACTTATTCAGGTTATATTGCAACATTTGAAGAGTTTCAA
GTTCAAAGATATGAAGGTGCATCAACCGTTTTTGGACCTCATACTTTAGGAGCATATCAA
CAAGAATTTGCAAATCTTGCACAATCAATTGTAGATGGTAGTCAAGCTGATCCAGGAACA
TTCCCAAGAAATATGTCTGGTCATACACCATTCTTTTTACCACCAGTCATTGTTGATGTA
GCTCCAAAATTCGACGATTTCGGTGATATCTATACTGATGTCTCTACAACTACACCATAT
TCAATCAATCAAACTGTTACCGTCATTTTCTATGGTGCCAATCTTAGAAATAATTTCATG
ACTGAATCTTCTTTCCTCACTGTTGATCAATTACAATCTAATGGTCAATGGACTACAATT
TTAAATGATGGTGATTGGGATACAAAATTATATTGGAAAATGCATGATTTAGGTTTTTCA
CTCATCACTGTTGATTGGACAATCTCTCCAATCACTCAACCAGGTACTTATAGAATAACT
CATAGTGGT
sequence update 2002. 9.10
Translated Amino Acid sequence
---LANTYSGYIATFEEFQVQRYEGASTVFGPHTLGAYQQEFANLAQSIVDGSQADPGTF
PRNMSGHTPFFLPPVIVDVAPKFDDFGDIYTDVSTTTPYSINQTVTVIFYGANLRNNFMT
ESSFLTVDQLQSNGQWTTILNDGDWDTKLYWKMHDLGFSLITVDWTISPITQPGTYRITH
SG


Translated Amino Acid sequence (All Frames)
Frame A:
---fskylfrlycni*rvssski*rcinrfwtsyfrsistricksctincrw*ss*srni
pkkyvwsytilfttshc*csskirrfr*yly*clynytifnqsncyrhflwcqs*k*fhd
*iffphc*siti*wsmdynfk*w*lgykiilena*frffthhc*ldnlsnhstryl*nns
*w


Frame B:
---LANTYSGYIATFEEFQVQRYEGASTVFGPHTLGAYQQEFANLAQSIVDGSQADPGTF
PRNMSGHTPFFLPPVIVDVAPKFDDFGDIYTDVSTTTPYSINQTVTVIFYGANLRNNFMT
ESSFLTVDQLQSNGQWTTILNDGDWDTKLYWKMHDLGFSLITVDWTISPITQPGTYRITH
SG


Frame C:
---*qiliqvilqhlksfkfkdmkvhqpfldlil*ehinknlqilhnql*mvvkliqehs
qeiclvihhsfyhqsllm*lqnstisvisilmslqlhhiqsikllpsfsmvpileiis*l
nllssllinynlmvnglqf*mmvigiqnyigkcmi*vfhsslligqslqslnqvlie*li
v


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHD874 (SHD874Q) /CSM/SH/SHD8-D/SHD874Q.Seq.d/ 1068 0.0
VSD672 (VSD672Q) /CSM/VS/VSD6-C/VSD672Q.Seq.d/ 1068 0.0
VHQ375 (VHQ375Q) /CSM/VH/VHQ3-D/VHQ375Q.Seq.d/ 1068 0.0
VHQ230 (VHQ230Q) /CSM/VH/VHQ2-B/VHQ230Q.Seq.d/ 1068 0.0
VHP543 (VHP543Q) /CSM/VH/VHP5-B/VHP543Q.Seq.d/ 1068 0.0
VHP486 (VHP486Q) /CSM/VH/VHP4-D/VHP486Q.Seq.d/ 1068 0.0
VHO854 (VHO854Q) /CSM/VH/VHO8-C/VHO854Q.Seq.d/ 1068 0.0
VHO470 (VHO470Q) /CSM/VH/VHO4-C/VHO470Q.Seq.d/ 1068 0.0
VHO409 (VHO409Q) /CSM/VH/VHO4-A/VHO409Q.Seq.d/ 1068 0.0
VHN210 (VHN210Q) /CSM/VH/VHN2-A/VHN210Q.Seq.d/ 1068 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U82513|U82513.1 Dictyostelium discoideum random slug cDNA25 protein (rsc25) mRNA, partial cds. 1066 0.0 1
AB121061|AB121061.1 Dictyostelium discoideum dcd2A mRNA for ceramidase, complete cds. 1066 0.0 1
BU801815|BU801815.1 SJF2DTD01 SJF Schistosoma japonicum cDNA, mRNA sequence. 48 0.26 1
BU718532|BU718532.1 SJM2CKE01 SJM Schistosoma japonicum cDNA, mRNA sequence. 48 0.26 1
BU718309|BU718309.1 SJM2CHH09 SJM Schistosoma japonicum cDNA, mRNA sequence. 48 0.26 1
AC165363|AC165363.1 Mus musculus chromosome 17 clone RP23-59N14, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces. 48 0.26 1
AC165167|AC165167.3 Mus musculus BAC clone RP23-27M6 from chromosome 17, complete sequence. 48 0.26 1
AC122257|AC122257.4 Mus musculus chromosome 17 clone RP23-178I11, complete sequence. 48 0.26 1
BX322530|BX322530.5 Zebrafish DNA sequence from clone DKEY-19N13 in linkage group 16. 32 2.0 2
AC182357|AC182357.2 Loxodonta africana clone VMRC15-453H3, WORKING DRAFT SEQUENCE, 7 ordered pieces. 44 3.6 2
dna update 2007. 5.10
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

U82513_1(U82513|pid:none) Dictyostelium discoideum random slug c... 375 e-103
(Q55G11) RecName: Full=Neutral ceramidase B; Short=N-CD... 273 3e-72
AC022464_28(AC022464|pid:none) Genomic sequence for Arabidopsis ... 145 9e-34
EU200974_1(EU200974|pid:none) Triticum aestivum neutral ceramida... 140 3e-32
AP002819_24(AP002819|pid:none) Oryza sativa Japonica Group genom... 139 5e-32
AK099625_1(AK099625|pid:none) Oryza sativa Japonica Group cDNA c... 139 5e-32
AK301784_1(AK301784|pid:none) Homo sapiens cDNA FLJ51366 complet... 138 1e-31
AL450382_3(AL450382|pid:none) Human DNA sequence from clone RP11... 138 1e-31
BC107105_1(BC107105|pid:none) Homo sapiens N-acylsphingosine ami... 138 1e-31
(Q304B9) RecName: Full=Neutral ceramidase; Short=N-CDas... 137 2e-31
protein update 2009. 6.28
PSORT

psg: 0.86 gvh: 0.57 alm: 0.45 top: 0.33 tms: 0.00 mit: 0.18 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

32.0 %: cytoplasmic
32.0 %: nuclear
12.0 %: extracellular, including cell wall
8.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for VHD245 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VHD245Z
3' end seq.
>VHD245Z.Seq
NNNNNNNNNNGTTTAGCAAATACTTATTCAGGTTATATTGCAACATTTGAAGAGTTTCAA
GTTCAAAGATATGAAGGTGCATCAACCGTTTTTGGACCTCATACTTTAGGAGCATATCAA
CAAGAATTTGCAAATCTTGCACAATCAATTGTAGATGGTAGTCAAGCTGATCCAGGAACA
TTCCCAAGAAATATGTCTGGTCATACACCATTCTTTTTACCACCAGTCATTGTTGATGTA
GCTCCAAAATTCGACGATTTCGGTGATATCTATACTGATGTCTCTACAACTACACCATAT
TCAATCAATCAAACTGTTACCGTCATTTTCTATGGTGCCAATCTTAGAAATAATTTCATG
ACTGAATCTTCTTTCCTCACTGTTGATCAATTACAATCTAATGGTCAATGGACTACAATT
TTAAATGATGGTGATTGGGATACAAAATTATATTGGAAAATGCATGATTTAGGTTTTTCA
CTCATCACTGTTGATTGGACAATCTCTCCAATCACTCAACCAGGTACTTATAGAATAACT
CATAGTGGT
Length of 3' end seq. 549
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -