VHD234
Library VH
(Link to library)
Clone ID VHD234
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16508-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VHD234 (VHD234Q) /CSM/VH/VHD2-B/VHD234Q.Seq.d/
XXXXXXXXXXTCTCAAGGTATGNAAATGCAAAAGAGAATAACCAACTATCGTCCATCATG
GAATTTANCCGTGGTTCAACCAACCAGTGGTAATTATGTACCTGTGAATGCTATTGCCTA
CATTCAAGATCCTAATCAATCATTACAATTCACCATTGTCACTGATAGAAGTCGTGGATG
TGCATCGTTAAGAGATGGTCAATTGGATATGATGATGCATCGTCGTACTTTGAAAGATGA
TGGTCGTGGTGTTGGTCAACCAATGAATGAGTCAACTCAAATCGTTACAACTAGTAAATT
GATTTTCCATGATATTTCAAGTTATGCTCAATCTCATTATCGTCCTGCTGCACTCTCTTT
ATCACATCCATTACTCCCAATGTTTACAACCACTCAACAATCTTCAAACGATTGGAATTC
TCAATATCAAGGTGTTTACTCACCATTGACTTCAGCCTCACCTTTACCAAATGGTTTAAA
GATTCAAACTCTACAATGGTTAGATAATCAAGATAATACCATACTTTTACGTATTGAAAA
TATTTATCAAATTGATGGTCAAGATTCACAAGATCCACAAACTATCACTTTAGATCTTTC
AACTATCTTTTCAACAATTACAATCACTTCTGCAACTGAAATGAATTTAACTGGTGTTCA
AAAATTATCAAATTNNTCAAGTANTANGAATGCCAAAACTGTTGANGGTAAAANCTATGT
NTCATANATCATCATCA
sequence update 2002. 9.10
Translated Amino Acid sequence
---QGMXMQKRITNYRPSWNLXVVQPTSGNYVPVNAIAYIQDPNQSLQFTIVTDRSRGCA
SLRDGQLDMMMHRRTLKDDGRGVGQPMNESTQIVTTSKLIFHDISSYAQSHYRPAALSLS
HPLLPMFTTTQQSSNDWNSQYQGVYSPLTSASPLPNGLKIQTLQWLDNQDNTILLRIENI
YQIDGQDSQDPQTITLDLSTIFSTITITSATEMNLTGVQKLSNXSSXXNAKTVXGKXYVS
XIII


Translated Amino Acid sequence (All Frames)
Frame A:
---lkvxkckre*ptivhhgixpwfnqpvvimyl*mllptfkilinhynsplslievvdv
hr*emvnwi**civvl*kmmvvvlvnq*msqlkslqlvn*fsmifqvmlnliivllhsly
hihysqclqplnnlqtigilnikvfthh*lqphlyqmv*rfklyng*iikiipyfyvlki
fiklmvkihkihklsl*ifqlsfqqlqsllqlk*i*lvfknyqixqvxxmpkllxvkxmx
hxsss


Frame B:
---sryxnakennqlssimefxrgstnqw*lctcecyclhsrs*siitihhch**kswmc
ivkrwsigyddassyfer*wswcwstne*vnsnryn**idfp*yfklcsislsscctlfi
tsitpnvynhstifkrlefsisrclltidfsltftkwfkdsnstmvr*sr*yhtfty*ky
lsn*wsrftrstnyhfrsfnylfnnynhfcn*nefnwcskiikxxkxxecqnc*x*xlcx
ixhh


Frame C:
---QGMXMQKRITNYRPSWNLXVVQPTSGNYVPVNAIAYIQDPNQSLQFTIVTDRSRGCA
SLRDGQLDMMMHRRTLKDDGRGVGQPMNESTQIVTTSKLIFHDISSYAQSHYRPAALSLS
HPLLPMFTTTQQSSNDWNSQYQGVYSPLTSASPLPNGLKIQTLQWLDNQDNTILLRIENI
YQIDGQDSQDPQTITLDLSTIFSTITITSATEMNLTGVQKLSNXSSXXNAKTVXGKXYVS
XIII


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHD234 (VHD234Q) /CSM/VH/VHD2-B/VHD234Q.Seq.d/ 1382 0.0
SHC216 (SHC216Q) /CSM/SH/SHC2-A/SHC216Q.Seq.d/ 1318 0.0
VHB425 (VHB425Q) /CSM/VH/VHB4-B/VHB425Q.Seq.d/ 1310 0.0
VFM747 (VFM747Q) /CSM/VF/VFM7-B/VFM747Q.Seq.d/ 1310 0.0
VHQ167 (VHQ167Q) /CSM/VH/VHQ1-C/VHQ167Q.Seq.d/ 1308 0.0
SHD680 (SHD680Q) /CSM/SH/SHD6-D/SHD680Q.Seq.d/ 1308 0.0
VHP293 (VHP293Q) /CSM/VH/VHP2-D/VHP293Q.Seq.d/ 1306 0.0
VHI312 (VHI312Q) /CSM/VH/VHI3-A/VHI312Q.Seq.d/ 1306 0.0
VHB333 (VHB333Q) /CSM/VH/VHB3-B/VHB333Q.Seq.d/ 1306 0.0
SHG729 (SHG729Q) /CSM/SH/SHG7-B/SHG729Q.Seq.d/ 1306 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

M82822|M82822.1 Dictyostelium discoideum alpha-mannosidase (manA) gene, complete cds. 1283 0.0 2
AM569193|AM569193.1 Paracentrotus lividus EST, clone MPMGp1173O11114Q, 5' end. 50 0.090 1
AP007341|AP007341.1 Lotus japonicus genomic DNA, chromosome 2, clone:LjT35G04, TM0425. 40 0.13 2
AL162752|AL162752.2 Neisseria meningitidis serogroup A strain Z2491 complete genome; segment 1/7. 44 1.1 2
EG619833|EG619833.1 EMBRYOF088227O8 POSSUM_01-POSSUM-C-EMBRYO-2KB Trichosurus vulpecula cDNA clone 1061028989863, mRNA sequence. 46 1.4 1
AV262947|AV262947.1 Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4930432P20, 3' end partial sequence. 44 5.5 1
DD002107|DD002107.1 Neisseria Genomic Sequences And Methods Of Their Use. 44 5.5 1
DD001141|DD001141.1 Neisseria Genomic Sequences And Methods Of Their Use. 44 5.5 1
CS352853|CS352853.1 Sequence 27 from Patent WO2006067518. 44 5.5 1
CS292765|CS292765.1 Sequence 4175 from Patent WO2000071725. 44 5.5 1
dna update 2007. 5.10
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

M82822_1(M82822|pid:none) Dictyostelium discoideum alpha-mannosi... 377 e-103
(P34098) RecName: Full=Lysosomal alpha-mannosidase; Sho... 377 e-103
AK068415_1(AK068415|pid:none) Oryza sativa Japonica Group cDNA c... 106 7e-22
(Q29451) RecName: Full=Lysosomal alpha-mannosidase; Sho... 105 2e-21
AY099704_1(AY099704|pid:none) Arabidopsis thaliana alpha-mannosi... 100 6e-20
AB005230_20(AB005230|pid:none) Arabidopsis thaliana genomic DNA,... 100 6e-20
EF146940_1(EF146940|pid:none) Populus trichocarpa clone WS01225_... 99 1e-19
AB026648_12(AB026648|pid:none) Arabidopsis thaliana genomic DNA,... 99 1e-19
AK291572_1(AK291572|pid:none) Homo sapiens cDNA FLJ76867 complet... 99 1e-19
U05572_1(U05572|pid:none) Human lysosomal alpha-mannosidase (MAN... 99 1e-19
protein update 2009. 6.28
PSORT

psg: 0.64 gvh: 0.50 alm: 0.41 top: 0.53 tms: 0.00 mit: 0.38 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: mitochondrial
36.0 %: nuclear
16.0 %: cytoplasmic
8.0 %: cytoskeletal
4.0 %: vesicles of secretory system

>> prediction for VHD234 is mit

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VHD234Z
3' end seq.
>VHD234Z.Seq
NNNNNNNNNNTCTCAAGGTATGNAAATGCAAAAGAGAATAACCAACTATCGTCCATCATG
GAATTTANCCGTGGTTCAACCAACCAGTGGTAATTATGTACCTGTGAATGCTATTGCCTA
CATTCAAGATCCTAATCAATCATTACAATTCACCATTGTCACTGATAGAAGTCGTGGATG
TGCATCGTTAAGAGATGGTCAATTGGATATGATGATGCATCGTCGTACTTTGAAAGATGA
TGGTCGTGGTGTTGGTCAACCAATGAATGAGTCAACTCAAATCGTTACAACTAGTAAATT
GATTTTCCATGATATTTCAAGTTATGCTCAATCTCATTATCGTCCTGCTGCACTCTCTTT
ATCACATCCATTACTCCCAATGTTTACAACCACTCAACAATCTTCAAACGATTGGAATTC
TCAATATCAAGGTGTTTACTCACCATTGACTTCAGCCTCACCTTTACCAAATGGTTTAAA
GATTCAAACTCTACAATGGTTAGATAATCAAGATAATACCATACTTTTACGTATTGAAAA
TATTTATCAAATTGATGGTCAAGATTCACAAGATCCACAAACTATCACTTTAGATCTTTC
AACTATCTTTTCAACAATTACAATCACTTCTGCAACTGAAATGAATTTAACTGGTGTTCA
AAAATTATCAAATTNNTCAAGTANTANGAATGCCAAAACTGTTGANGGTAAAANCTATGT
NTCATANATCATCATCA
Length of 3' end seq. 737
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -