>VHD222 (VHD222Q) /CSM/VH/VHD2-A/VHD222Q.Seq.d/
XXXXXXXXXXCGTCTCATTCATGTACTTGTACGTATTTTAACATTTGGTTACATTGGTGT
CTTAATTGCTGCCTCATTTGCTATGGTTACACCATTACATGACTATAGAATCATCATTCC
AGGTGCCATTATCTTTGTTCTCTATGGTATTGGTTTACCAATTGCCATTTGGTTCCTTCT
TGCAGTTCCAGAAGCTCGTCTCCACAATCCAACCTTTAAACAAAGATTTGGCTGTCTCTA
CGTTCACTACAAACCAAAGACTGATCATCGTTTCGTTGTTTTCATGTTTATCAAGAGATT
CATTATGGCCGTTATCATTGGTATCTTATCATTCAAACCAATGACCAACTATCCATTAAC
TGGTACTGATTTAGCCGTTCCAATCGTTCAAGTAGTTGTCATTGATATCGCTCTCATTGG
TTATGCTGTATTATTATTCATCCGTAAACCATATTTCGATCATTATCAATTATGGCTCGA
ATATCTCTTAACTGCCATCAATATTGTTACAGTTTCTCTCTCACTCACTCACATCAAATC
ACCAAGCGCCGCTGGTGAATTAATTGCATGTCTTATTCAAGCTTTAGCCCTTGTAGCTTG
TATTGCCGCTTACGTCGTAGCATGGCTCCAAATGAGATCTTCTTTCAGTNCCACAGT

---LIHVLVRILTFGYIGVLIAASFAMVTPLHDYRIIIPGAIIFVLYGIGLPIAIWFLLA
VPEARLHNPTFKQRFGCLYVHYKPKTDHRFVVFMFIKRFIMAVIIGILSFKPMTNYPLTG
TDLAVPIVQVVVIDIALIGYAVLLFIRKPYFDHYQLWLEYLLTAINIVTVSLSLTHIKSP
SAAGELIACLIQALALVACIAAYVVAWLQMRSSFSXT

Frame A:
---vsfmylyvf*hlvtlvs*llphllwlhhymtiessfqvplslfsmvlvyqlpfgsfl
qfqklvstiqplnkdlavstfttnqrliivslfsclsrdslwplslvsyhsnq*ptih*l
vli*pfqsfk*lslislslvmlyyyssvnhisiiinygsnis*lpsillqflshsltsnh
qaplvn*lhvlfkl*pl*lvlplts*hgsk*dllsvpq


Frame B:
---shsctctyfniwlhwclncclicygytit*l*nhhsrchylcslwywftnchlvpsc
ssrssspqsnl*tkiwlslrslqtkd*ssfrcfhvyqeihygryhwyliiqtndqlsinw
y*fsrsnrsssch*yrshwlcciiihp*tifrslsimarislnchqycysfslthshqit
krrw*incmsyssfspcslycrlrrsmapneiffqxhs


Frame C:
---LIHVLVRILTFGYIGVLIAASFAMVTPLHDYRIIIPGAIIFVLYGIGLPIAIWFLLA
VPEARLHNPTFKQRFGCLYVHYKPKTDHRFVVFMFIKRFIMAVIIGILSFKPMTNYPLTG
TDLAVPIVQVVVIDIALIGYAVLLFIRKPYFDHYQLWLEYLLTAINIVTVSLSLTHIKSP
SAAGELIACLIQALALVACIAAYVVAWLQMRSSFSXT

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHD222 (VHD222Q) /CSM/VH/VHD2-A/VHD222Q.Seq.d/                       1277   0.0
VHH579 (VHH579Q) /CSM/VH/VHH5-D/VHH579Q.Seq.d/                       1263   0.0
VHQ122 (VHQ122Q) /CSM/VH/VHQ1-A/VHQ122Q.Seq.d/                       1249   0.0
VHD395 (VHD395Q) /CSM/VH/VHD3-D/VHD395Q.Seq.d/                       1138   0.0
VHD711 (VHD711Q) /CSM/VH/VHD7-A/VHD711Q.Seq.d/                       1118   0.0
VHL774 (VHL774Q) /CSM/VH/VHL7-D/VHL774Q.Seq.d/                       1082   0.0
CHQ351 (CHQ351Q) /CSM/CH/CHQ3-C/CHQ351Q.Seq.d/                        997   0.0
VHF655 (VHF655Q) /CSM/VH/VHF6-C/VHF655Q.Seq.d/                        995   0.0
VHO179 (VHO179Q) /CSM/VH/VHO1-D/VHO179Q.Seq.d/                        969   0.0
VHP302 (VHP302Q) /CSM/VH/VHP3-A/VHP302Q.Seq.d/                        932   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AY178767|AY178767.1 Dictyostelium discoideum substrate adhesion molecule precursor (sadA) gene, complete cds.  1247   0.0    1
CX781713|CX781713.1 HESC3_8_D09.g1_A036 NIH_MGC_260 Homo sapiens cDNA clone IMAGE:7476164 5', mRNA sequence.    48   0.32   1
EF565095|EF565095.1 Homo sapiens chromosome 8 isolate HA_003160 mRNA sequence.    48   0.32   1
AC007991|AC007991.7 Homo sapiens, clone RP11-44K6, complete sequence.    48   0.32   1
BW645855|BW645855.1 Fusarium oxysporum f. sp. melonis mRNA, clone: WVG-8_C11.    46   1.2    1
EC594866|EC594866.1 FU040e05 Asexual conidial life-cycle of Fusarium oxysporum f. sp. cucumerinum Fusarium oxysporum f. sp. cucumerinum cDNA clone FU040e05 5', mRNA sequence.    46   1.2    1
EC594347|EC594347.1 FU032f04 Asexual conidial life-cycle of Fusarium oxysporum f. sp. cucumerinum Fusarium oxysporum f. sp. cucumerinum cDNA clone FU032f04 5', mRNA sequence.    46   1.2    1
EC593806|EC593806.1 FU023a02 Asexual conidial life-cycle of Fusarium oxysporum f. sp. cucumerinum Fusarium oxysporum f. sp. cucumerinum cDNA clone FU023a02 5', mRNA sequence.    46   1.2    1
EB054658|EB054658.1 StheSEQ14110 Sporotrichum thermophile pBluescript (EcoRI-XhoI) Corynascus heterothallicus cDNA clone StheSEQ14110, mRNA sequence.    46   1.2    1
EB053725|EB053725.1 StheSEQ12897 Sporotrichum thermophile pBluescript (EcoRI-XhoI) Corynascus heterothallicus cDNA clone StheSEQ12897, mRNA sequence.    46   1.2    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q8I7T3) RecName: Full=Substrate-adhesion molecule; Flags: Precu...   421   e-116
CR548612_390(CR548612|pid:none) Paramecium tetraurelia macronucl...    38   0.23
AY205303_1(AY205303|pid:none) Kluyveromyces lactis drug efflux p...    37   0.39
AM285321_36(AM285321|pid:none) Spiroplasma citri GII3-3X chromos...    37   0.39
AE017333_1520(AE017333|pid:none) Bacillus licheniformis DSM 13, ...    37   0.51
AM946015_102(AM946015|pid:none) Streptococcus uberis 0140J compl...    36   0.87
CP000675_277(CP000675|pid:none) Legionella pneumophila str. Corb...    36   1.1
CR628337_262(CR628337|pid:none) Legionella pneumophila str. Lens...    36   1.1
AX664704_1(AX664704|pid:none) Sequence 13 from Patent WO02074960.      35   1.9
AB065914_1(AB065914|pid:none) Homo sapiens gene for seven transm...    35   1.9

 psg: 0.95  gvh: 0.56  alm: 0.17  top: 0.40  tms: 0.40  mit: 0.35  mip: 0.16
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 24.0 %: mitochondrial
	 24.0 %: plasma membrane
	  8.0 %: extracellular, including cell wall
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: nuclear

>> prediction for VHD222 is end

>VHD222Z.Seq
NNNNNNNNNNCGTCTCATTCATGTACTTGTACGTATTTTAACATTTGGTTACATTGGTGT
CTTAATTGCTGCCTCATTTGCTATGGTTACACCATTACATGACTATAGAATCATCATTCC
AGGTGCCATTATCTTTGTTCTCTATGGTATTGGTTTACCAATTGCCATTTGGTTCCTTCT
TGCAGTTCCAGAAGCTCGTCTCCACAATCCAACCTTTAAACAAAGATTTGGCTGTCTCTA
CGTTCACTACAAACCAAAGACTGATCATCGTTTCGTTGTTTTCATGTTTATCAAGAGATT
CATTATGGCCGTTATCATTGGTATCTTATCATTCAAACCAATGACCAACTATCCATTAAC
TGGTACTGATTTAGCCGTTCCAATCGTTCAAGTAGTTGTCATTGATATCGCTCTCATTGG
TTATGCTGTATTATTATTCATCCGTAAACCATATTTCGATCATTATCAATTATGGCTCGA
ATATCTCTTAACTGCCATCAATATTGTTACAGTTTCTCTCTCACTCACTCACATCAAATC
ACCAAGCGCCGCTGGTGAATTAATTGCATGTCTTATTCAAGCTTTAGCCCTTGTAGCTTG
TATTGCCGCTTACGTCGTAGCATGGCTCCAAATGAGATCTTCTTTCAGTNCCACAGT