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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHD219
Library VH
(Link to library)
Clone ID VHD219
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID VHD219P
(Link to Original site)
Representative DNA sequence 
>VHD219 (VHD219Q) /CSM/VH/VHD2-A/VHD219Q.Seq.d/
AAATCGAACAACCTAGTAGCTGGTTCCTTCCGAAGTTTCCCTCAGGATAGCTGGAGCAGT
ATTCTAGTTCCATCTTGTAAAGACAATGATTAGCAGTTTCGGGGGCGTAATGCTCTCAGC
TGATTCTCAAACTCTGAACGGGTGGGTATCATTTTAATTCACTTAATTGGATTTTAAAAT
TAAATTGCACATGTGCAATGAAAAATAGGAGCTCTTAGTGGGCCATTTTTGGTAAGCAGA
ACTGGCGATGTGGGTTGAACCAAATATTGGGATAAGACGTCTAACATTCACTAATAGATA
CCACAAAAGGTGTTAGTTCATTAAGACAGCAGGACGGTGGCCATGGAAGTCGGTATCCGC
TAAGGAGTGTGTAACAACTCACCTGCCAAATGGACTAGCCCTGAAAATGGATGACGCTAG
CAGTGGATGGTCGATGCCCAATCGTTAAAAGAAGTGATAATACTTTTAACGTGTAGGAAG
GCGTGAAGGTAACGTAGAAGCTTGAATGTGAATTCGAGTGGAGTTGTCTTTAGTGCAGAT
CTTGATGGTAGTAGCAAATATTCAAAAGAATTTACTTTGAAGGCCGAAGTGGGXXXXXXX
XXXTGATTTTCAGTACTAATCGGAACTGGGAAACCAGGGCCTATCGATCCTTTATGTGCT
TAAATCTTAAGCCTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGC
CAAGCGCTCATAGCGACGCTGCTTTTTGATCCTTCGATGTCGGCTCTTCTTATCATTGTG
AAGCAGAATTCACAAAGTGTTGGATTGTTCACCCACTAACAAGGAACGTGAGCTGGGTTT
AGACCGTCGTGAGACAGGTTAGTTTTACCCTACTGTTGTCAATTGTTTGCGTAATAGTAG
CATGATTTAGTACGAGAGGAACTGTCATGCCGGATCACTGGTCTGTAGGTTTATTTGACA
AAATAGTGACCTGCCGCTACCATCCGTTGGATAATGGCTGAACGCCTCTAAGTCAGAATC
CATTCTAGAAACGCAAACCAAATGCTTTAGAGTGTGAATGTTGTAGGTAACATTAGGTTG
TTGGTGGGGGACCACTTTCAACTTTAAACCATATGATTAATCGCTGTTACACTGCAGTTT
CCTTCCGGTTATTGTGGTGGGTGGCTAAATTCTAATTTATATCCTCGTTCCGCTCAACTC
TTCGATTGTAGACGACTATCAAATGAACTAGGTGCTGTAAGCTTCCGAGTAGCGTTCAGT
TACGAGGGGTTGAGGCTTTTCCATT
sequence update 2002.10.25
Translated Amino Acid sequence 
ksnnlvagsfrsfpqdswssilvpsckdnd*qfrgrnals*fsnservgiilihligf*n
*iahvq*kigalsgpflvsrtgdvg*tkywdktsnih**ipqkvlvh*dsrtvamevgir
*gvcnnspakwtspeng*r*qwmvdaqslkeviilltcrka*r*RRSLNVNSSGVVFSAD
LDGSSKYSKEFTLKAEV---

---IFSTNRNWETRAYRSFMCLNLKPRGVRKVTTGITGLWQPSAHSDAAF*sfdvgssyh
ceaeftkcwivhpltrnvswv*tvvrqvsftlllsivcviva*fstrgtvmpdhwsvglf
dkivtcryhpldng*tplsqnpf*krkpnalececcr*h*vvgggplstlnhminrcyta
vsfrllwwvakf*fissfrstlrl*ttik*trccklpssvqlrgveafp
Translated Amino Acid sequence (All Frames) 
Frame A:
ksnnlvagsfrsfpqdswssilvpsckdnd*qfrgrnals*fsnservgiilihligf*n
*iahvq*kigalsgpflvsrtgdvg*tkywdktsnih**ipqkvlvh*dsrtvamevgir
*gvcnnspakwtspeng*r*qwmvdaqslkeviilltcrka*r*RRSLNVNSSGVVFSAD
LDGSSKYSKEFTLKAEV---

---*fsvligtgkpgpidplca*ilslevseklpqg*lacgsqaliatllfdpsmsalli
ivkqnsqsvglfth*qgt*agfrps*drlvlpyccqlfa***hdlvreelscritgl*vy
ltk**paatirwimaerl*vrihsrnanqml*svnvvgnirllvgdhfql*ti*liavtl
qfpsgycggwlnsnlyprsaqlfdcrrlsnelgavsfrvafsyeglrlfh

Frame B:
nrtt**lvpsevslriagavf*fhlvktmissfggvmlsadsqtlngwvsf*ft*ldfki
klhmcnek*ellvghfw*aelamwvepnigirrltftnryhkrc*fiktagrwpwksvsa
kecvtthlpnglalkmddassgwsmpnr*kk**yf*rvgrregnvea*m*irvelslvqi
lmvvaniqknll*rpkw---

---dfqy*selgnqglsilyvlks*a*rcqksyhrdnwlvaakrs*rrcflilrcrlfls
l*srihkvldcsptnkerelgldrretg*fyptvvnclrnssmi*yernchagslvcrfi
*qnsdlplpsvg*wlnasksesiletqtkcfrv*ml*vtlgcwwgttfnfkpyd*sllhc
sflpvivvgg*iliyilvplnssivddyqmn*vl*ase*rsvtrg*gfsi

Frame C:
ieqpsswflpkfpsg*leqysssil*rq*lavsga*csqlilkl*tggyhfnslnwilkl
nctcamknrss*waifgkqnwrcglnqilg*dv*hslidttkgvsslrqqdgghgsrypl
rsv*qltcqmd*p*kwmtlavdgrcpivkrsdntfnv*egvkvt*klecefewscl*crs
*w**qifkriyfegrsg---

---IFSTNRNWETRAYRSFMCLNLKPRGVRKVTTGITGLWQPSAHSDAAF*sfdvgssyh
ceaeftkcwivhpltrnvswv*tvvrqvsftlllsivcviva*fstrgtvmpdhwsvglf
dkivtcryhpldng*tplsqnpf*krkpnalececcr*h*vvgggplstlnhminrcyta
vsfrllwwvakf*fissfrstlrl*ttik*trccklpssvqlrgveafp
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHD219 (VHD219Q) /CSM/VH/VHD2-A/VHD219Q.Seq.d/                       2488   0.0
VHC874 (VHC874Q) /CSM/VH/VHC8-D/VHC874Q.Seq.d/                       1352   0.0
VHK875 (VHK875Q) /CSM/VH/VHK8-D/VHK875Q.Seq.d/                       1352   0.0
VHI207 (VHI207Q) /CSM/VH/VHI2-A/VHI207Q.Seq.d/                       1352   0.0
VHD592 (VHD592Q) /CSM/VH/VHD5-D/VHD592Q.Seq.d/                       1352   0.0
VHC874 (VHC874Q) /CSM/VH/VHC8-D/VHC874Q.Seq.d/                       1352   0.0
SLE369 (SLE369Q) /CSM/SL/SLE3-C/SLE369Q.Seq.d/                       1352   0.0
SHA880 (SHA880Q) /CSM/SH/SHA8-D/SHA880Q.Seq.d/                       1352   0.0
SFC338 (SFC338Q) /CSM/SF/SFC3-B/SFC338Q.Seq.d/                       1352   0.0
CHI557 (CHI557Q) /CSM/CH/CHI5-C/CHI557Q.Seq.d/                       1352   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AY171066|AY171066.1 Dictyostelium discoideum extrachromosomal palindromic ribosomal RNA gene sequence, central segment.  1352   0.0    1
DQ340385|DQ340385.1 Dictyostelium citrinum 17S ribosomal RNA, 5.8S ribosomal RNA, 26S ribosomal RNA, and 5S ribosomal RNA genes, complete sequence.  1336   0.0    1
X00601|X00601.1 Dictyostelium discoideum ribosomal RNA gene.     1168   0.0    1
DQ340386|DQ340386.1 Dictyostelium purpureum 17S ribosomal RNA, 5.8S ribosomal RNA, 26S ribosomal RNA, and 5S ribosomal RNA genes, complete sequence.   771   0.0    7
DQ340387|DQ340387.1 Dictyostelium polycephalum 17S ribosomal RNA, 5.8S ribosomal RNA, and 26S ribosomal RNA genes, complete sequence.   430   0.0    9
DQ340388|DQ340388.1 Polysphondylium pallidum 17S ribosomal RNA, 5.8S ribosomal RNA, 26S ribosomal RNA, and 5S ribosomal RNA genes, complete sequence.   379   0.0    10
AF289037|AF289037.1 Guillardia theta 28S ribosomal RNA gene, complete sequence.   345   0.0    9
AJ864475|AJ864475.1 Orpinomyces sp. OUS1 partial 18S rRNA gene, ITS1, 5.8S rRNA gene,  ITS2 and partial 28S rRNA, clone V5-1.   331   0.0    8
DQ002502|DQ002502.1 Tetraplatia volitans 28S large subunit ribosomal RNA gene, partial sequence.   347   0.0    9
DQ273803|DQ273803.1 Rozella allomycis isolate AFTOL-ID 297 28S ribosomal RNA gene, partial sequence.   375   0.0    7
dna update 2007. 5.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU430725_1(EU430725|pid:none) Cupressus sempervirens clone CYPLP...   140   1e-31
AY436773_1(AY436773|pid:none) Pyrus communis putative senescence...    91   9e-17
CP001575_406(CP001575|pid:none) Micromonas sp. RCC299 chromosome...    89   3e-16
AK230153_1(AK230153|pid:none) Arabidopsis thaliana mRNA for hypo...    86   3e-15
CP000497_644(CP000497|pid:none) Pichia stipitis CBS 6054 chromos...    60   9e-14
EU244380_1(EU244380|pid:none) Haliotis diversicolor clone HDr4CJ...    73   2e-11
BC114377_1(BC114377|pid:none) Homo sapiens cDNA clone MGC:134704...    68   8e-10
EF192058_1(EF192058|pid:none) Trichosanthes dioica clone TDM04 p...    67   1e-09
AL844507_287(AL844507|pid:none) Plasmodium falciparum 3D7 chromo...    54   9e-06
U12823_1(U12823|pid:none) Acanthamoeba polyphaga CDC:0187:1 hemo...    45   9e-04
protein update 2009. 6.28
PSORT 

 psg: 0.89  gvh: 0.42  alm: 0.54  top: 0.33  tms: 0.00  mit: 0.44  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 28.0 %: mitochondrial
	 20.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: extracellular, including cell wall
	  4.0 %: peroxisomal

>> prediction for VHD219 is nuc
5' end seq. ID VHD219F
5' end seq. 
>VHD219F.Seq
AAATCGAACAACCTAGTAGCTGGTTCCTTCCGAAGTTTCCCTCAGGATAGCTGGAGCAGT
ATTCTAGTTCCATCTTGTAAAGACAATGATTAGCAGTTTCGGGGGCGTAATGCTCTCAGC
TGATTCTCAAACTCTGAACGGGTGGGTATCATTTTAATTCACTTAATTGGATTTTAAAAT
TAAATTGCACATGTGCAATGAAAAATAGGAGCTCTTAGTGGGCCATTTTTGGTAAGCAGA
ACTGGCGATGTGGGTTGAACCAAATATTGGGATAAGACGTCTAACATTCACTAATAGATA
CCACAAAAGGTGTTAGTTCATTAAGACAGCAGGACGGTGGCCATGGAAGTCGGTATCCGC
TAAGGAGTGTGTAACAACTCACCTGCCAAATGGACTAGCCCTGAAAATGGATGACGCTAG
CAGTGGATGGTCGATGCCCAATCGTTAAAAGAAGTGATAATACTTTTAACGTGTAGGAAG
GCGTGAAGGTAACGTAGAAGCTTGAATGTGAATTCGAGTGGAGTTGTCTTTAGTGCAGAT
CTTGATGGTAGTAGCAAATATTCAAAAGAATTTACTTTGAAGGCCGAAGTGGGNNNNNNN
NNN
Length of 5' end seq. 603
3' end seq. ID VHD219Z
3' end seq. 
>VHD219Z.Seq
NNNNNNNNNNTGATTTTCAGTACTAATCGGAACTGGGAAACCAGGGCCTATCGATCCTTT
ATGTGCTTAAATCTTAAGCCTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTG
TGGCAGCCAAGCGCTCATAGCGACGCTGCTTTTTGATCCTTCGATGTCGGCTCTTCTTAT
CATTGTGAAGCAGAATTCACAAAGTGTTGGATTGTTCACCCACTAACAAGGAACGTGAGC
TGGGTTTAGACCGTCGTGAGACAGGTTAGTTTTACCCTACTGTTGTCAATTGTTTGCGTA
ATAGTAGCATGATTTAGTACGAGAGGAACTGTCATGCCGGATCACTGGTCTGTAGGTTTA
TTTGACAAAATAGTGACCTGCCGCTACCATCCGTTGGATAATGGCTGAACGCCTCTAAGT
CAGAATCCATTCTAGAAACGCAAACCAAATGCTTTAGAGTGTGAATGTTGTAGGTAACAT
TAGGTTGTTGGTGGGGGACCACTTTCAACTTTAAACCATATGATTAATCGCTGTTACACT
GCAGTTTCCTTCCGGTTATTGTGGTGGGTGGCTAAATTCTAATTTATATCCTCGTTCCGC
TCAACTCTTCGATTGTAGACGACTATCAAATGAACTAGGTGCTGTAAGCTTCCGAGTAGC
GTTCAGTTACGAGGGGTTGAGGCTTTTCCATT
Length of 3' end seq. 692
Connected seq. ID VHD219P
Connected seq. 
>VHD219P.Seq
AAATCGAACAACCTAGTAGCTGGTTCCTTCCGAAGTTTCCCTCAGGATAGCTGGAGCAGT
ATTCTAGTTCCATCTTGTAAAGACAATGATTAGCAGTTTCGGGGGCGTAATGCTCTCAGC
TGATTCTCAAACTCTGAACGGGTGGGTATCATTTTAATTCACTTAATTGGATTTTAAAAT
TAAATTGCACATGTGCAATGAAAAATAGGAGCTCTTAGTGGGCCATTTTTGGTAAGCAGA
ACTGGCGATGTGGGTTGAACCAAATATTGGGATAAGACGTCTAACATTCACTAATAGATA
CCACAAAAGGTGTTAGTTCATTAAGACAGCAGGACGGTGGCCATGGAAGTCGGTATCCGC
TAAGGAGTGTGTAACAACTCACCTGCCAAATGGACTAGCCCTGAAAATGGATGACGCTAG
CAGTGGATGGTCGATGCCCAATCGTTAAAAGAAGTGATAATACTTTTAACGTGTAGGAAG
GCGTGAAGGTAACGTAGAAGCTTGAATGTGAATTCGAGTGGAGTTGTCTTTAGTGCAGAT
CTTGATGGTAGTAGCAAATATTCAAAAGAATTTACTTTGAAGGCCGAAGTGGG-------
---TGATTTTCAGTACTAATCGGAACTGGGAAACCAGGGCCTATCGATCCTTTATGTGCT
TAAATCTTAAGCCTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGC
CAAGCGCTCATAGCGACGCTGCTTTTTGATCCTTCGATGTCGGCTCTTCTTATCATTGTG
AAGCAGAATTCACAAAGTGTTGGATTGTTCACCCACTAACAAGGAACGTGAGCTGGGTTT
AGACCGTCGTGAGACAGGTTAGTTTTACCCTACTGTTGTCAATTGTTTGCGTAATAGTAG
CATGATTTAGTACGAGAGGAACTGTCATGCCGGATCACTGGTCTGTAGGTTTATTTGACA
AAATAGTGACCTGCCGCTACCATCCGTTGGATAATGGCTGAACGCCTCTAAGTCAGAATC
CATTCTAGAAACGCAAACCAAATGCTTTAGAGTGTGAATGTTGTAGGTAACATTAGGTTG
TTGGTGGGGGACCACTTTCAACTTTAAACCATATGATTAATCGCTGTTACACTGCAGTTT
CCTTCCGGTTATTGTGGTGGGTGGCTAAATTCTAATTTATATCCTCGTTCCGCTCAACTC
TTCGATTGTAGACGACTATCAAATGAACTAGGTGCTGTAAGCTTCCGAGTAGCGTTCAGT
TACGAGGGGTTGAGGCTTTTCCATT
Length of connected seq. 1275
Full length Seq ID -
Full length Seq. -
Length of full length seq. -