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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHD208
Library VH
(Link to library)
Clone ID VHD208
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16430-1
Original site URL
Representative seq. ID VHD208P
(Link to Original site)
Representative DNA sequence 
>VHD208 (VHD208Q) /CSM/VH/VHD2-A/VHD208Q.Seq.d/
ACTTCACATTTAGGTCCTATATTCTAATTCATAATTAATTTTATTTGTTTTTTTTTGTAG
AACATAAAAAAATGGCTGAATCACAAGTTGAACGTTTCACATTCCAAGCTGAAATTAATC
AGCTTATGTCCCTTATTATTAATACTTTTTATTCAAATAAAGAAGTATTTTTAAGAGAAT
TGATTTCAAATGCATCTGATGCCTTAGATAAAATTCGTTACCAATCATTAACTGATGCAT
CAGTTTTGGAATCAAAAACTGAACTCGAAATTAAAATTATTCCAGATAAGACTGCCAAAA
CTCTTACACTCATTGATAGTGGTATTGGTATGACCAAAACCGATATGGTAAAGAATTTAG
GTACTATTGCTCGTTCAGGTACTAAAAACTTTATGGAACAATTACAAAGTGGTGCCGCTG
ATATCAGTATGATTGGTCAATTTGGTGTTGGTTTCTACTCTGCTTACTTAGTTGCCGATA
CTGTTATTGTTCACTCTAAAAACAATGATGATGAACAATACGTTTGGGAATCAAGTGCTG
GTGGTGAATTTACCATTGCTCTCGATCATACCGAXXXXXXXXXXAAGNAAAAAGCTGAAC
AAGATAAANCTGCCAATGAAGAATTACTCAAACAAGTTAAANATGTATTGGGTGATAAAG
TTGAAAAGGTAGTTCTCTCAACTCGTCTTGCCAACTCACCATGTGTTTTAGTTACCTCTG
AATATGGTTGGTCAGCAAACATGGAACGTATCATGAAAGCTCAAGCTCTCCGTGACTCTT
CAATGTCATCATACATGTCATCAAAGAAAACTTTAGAATTAAATCCAGATCACCCAATCG
TTAGAGATTTAGCCAAAAAAGCCGCCGAAAAAAGTAAAACTTTCAAAGACTTTGTTTACT
TATTATATGAAACTGCTCTCTTAACTTCAGGTTTCTCATTAGATGAACCATCATCATTTG
CTTCACGTATTCATCGTATGATTAAATTAGGTTTAAGCATTCAAGATGATTCATCAGCAA
CAACTGAAGAATCAACAAACACAACAACCAGTGATGATATTCCACCATTAGAAGAAAACG
ATGAACCATCTGAAATGGAAAAAGTCGACTAGATTTAATTACTAGCCCTTTTGCTATCAA
TTTTTTGGAATATTGTTATATTATTATA
sequence update 2002.10.25
Translated Amino Acid sequence 
ftfrsyilihn*FYLFFFVEHKKMAESQVERFTFQAEINQLMSLIINTFYSNKEVFLREL
ISNASDALDKIRYQSLTDASVLESKTELEIKIIPDKTAKTLTLIDSGIGMTKTDMVKNLG
TIARSGTKNFMEQLQSGAADISMIGQFGVGFYSAYLVADTVIVHSKNNDDEQYVWESSAG
GEFTIALDHT---

---KXKAEQDKXANEELLKQVKXVLGDKVEKVVLSTRLANSPCVLVTSEYGWSANMERIM
KAQALRDSSMSSYMSSKKTLELNPDHPIVRDLAKKAAEKSKTFKDFVYLLYETALLTSGF
SLDEPSSFASRIHRMIKLGLSIQDDSSATTEESTNTTTSDDIPPLEENDEPSEMEKVD*i
*llalllsifwnivill
Translated Amino Acid sequence (All Frames) 
Frame A:
tshlgpif*fiinficffl*nikkwlnhklnvshsklklislcplllilfiqikkyf*en
*fqmhlmp*ikfvtnh*lmhqfwnqklnsklklfqirlpkllhslivvlv*pkpiw*ri*
vlllvqvlktlwnnykvvplisv*lvnlvlvstllt*lpilllftlktmmmnntfgnqvl
vvnlpllsiip---

---KXKAEQDKXANEELLKQVKXVLGDKVEKVVLSTRLANSPCVLVTSEYGWSANMERIM
KAQALRDSSMSSYMSSKKTLELNPDHPIVRDLAKKAAEKSKTFKDFVYLLYETALLTSGF
SLDEPSSFASRIHRMIKLGLSIQDDSSATTEESTNTTTSDDIPPLEENDEPSEMEKVD*i
*llalllsifwnivill

Frame B:
lhi*vlysns*lilfvffcrt*kng*its*tfhips*n*sayvpyy*yflfk*rsifkri
dfkci*clr*nslpiin*cisfgikn*trn*nysr*dcqnsyth**wywydqnrygkefr
yycsfry*klygtitkwcr*yqydwsiwcwfllcllscrycycsl*kq***tirlgikcw
w*iyhcsrsyr---

---xkklnkixlpmknysnklxmywviklkr*fsqlvlpthhvf*lplnmvgqqtwnvs*
klklsvtlqchhtchqrkl*n*iqitqslei*pkkppkkvklsktlftyymklls*lqvs
h*mnhhhllhvfiv*ln*v*afkmihqqqlknqqtqqpvmifhh*kktmnhlkwkkstrf
ny*pfcyqffgillyyy

Frame C:
ftfrsyilihn*FYLFFFVEHKKMAESQVERFTFQAEINQLMSLIINTFYSNKEVFLREL
ISNASDALDKIRYQSLTDASVLESKTELEIKIIPDKTAKTLTLIDSGIGMTKTDMVKNLG
TIARSGTKNFMEQLQSGAADISMIGQFGVGFYSAYLVADTVIVHSKNNDDEQYVWESSAG
GEFTIALDHT---

---xks*tr*xcq*ritqts*xcig**s*kgsslnsscqltmcfsyl*iwlvskhgtyhe
ssssp*lfnviihvikenfriksrspnr*rfsqksrrkk*nfqrlcllii*ncslnfrfl
ir*tiiicftyssyd*irfkhsr*fisnn*rinkhnnq**ystirrkr*ti*ngksrldl
itspfainfleycyiii
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHQ442 (VHQ442Q) /CSM/VH/VHQ4-B/VHQ442Q.Seq.d/                       1043   0.0
VHP152 (VHP152Q) /CSM/VH/VHP1-C/VHP152Q.Seq.d/                       1043   0.0
VHM703 (VHM703Q) /CSM/VH/VHM7-A/VHM703Q.Seq.d/                       1043   0.0
VHK340 (VHK340Q) /CSM/VH/VHK3-B/VHK340Q.Seq.d/                       1043   0.0
VHK280 (VHK280Q) /CSM/VH/VHK2-D/VHK280Q.Seq.d/                       1043   0.0
VHI607 (VHI607Q) /CSM/VH/VHI6-A/VHI607Q.Seq.d/                       1043   0.0
VHH869 (VHH869Q) /CSM/VH/VHH8-C/VHH869Q.Seq.d/                       1043   0.0
VHP202 (VHP202Q) /CSM/VH/VHP2-A/VHP202Q.Seq.d/                       1033   0.0
VHL421 (VHL421Q) /CSM/VH/VHL4-A/VHL421Q.Seq.d/                       1033   0.0
VHK487 (VHK487Q) /CSM/VH/VHK4-D/VHK487Q.Seq.d/                       1033   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

L43591|L43591.1 Dictyostelium discoideum (clone C 6.1.1) heat shock cognate protein (hsc90) mRNA, complete cds.   995   0.0    3
AF249998|AF249998.1 Habrotrocha constricta 82 kDa heat shock protein 2 (hsp82-2) gene, partial cds.    88   8e-47  4
AJ890081|AJ890081.1 Delia antiqua mRNA for Hsp90 protein.          72   2e-44  6
AF143854|AF143854.1 Sinantherina socialis 82 kD heat shock protein (hsp82) gene, partial cds.    78   9e-43  4
AY122634|AY122634.1 Naegleria gruberi strain ATCC 30224 heat shock protein 90 (HSP-90) gene, partial cds.    86   2e-42  6
AF143849|AF143849.1 Adineta vaga 82 kD heat shock protein 1 (hsp82-1) gene, partial cds.    78   3e-42  5
AF143850|AF143850.1 Habrotrocha constricta 82 kD heat shock protein 1 (hsp82-1) gene, partial cds.    88   7e-41  4
L34027|L34027.1 Plasmodium falciparum (clone Dd2) heat shock protein 86 gene, complete cds.    98   1e-40  7
AF143858|AF143858.1 Eosphora ehrenbergi 82 kD heat shock protein (hsp82) gene, partial cds.    74   2e-40  4
L34028|L34028.1 Plasmodium falciparum (clone HB3) heat shock protein 86 gene, complete cds.    98   3e-40  6
dna update 2007. 5.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54651) RecName: Full=Heat shock cognate 90 kDa protein;             323   5e-87
L43591_1(L43591|pid:none) Dictyostelium discoideum (clone C 6.1....   323   5e-87
AB300196_1(AB300196|pid:none) Physarum polycephalum hsp90 mRNA f...   259   1e-67
FJ392027_1(FJ392027|pid:none) Portunus trituberculatus heat shoc...   251   5e-65
EF687776_1(EF687776|pid:none) Crassostrea gigas heat shock prote...   251   5e-65
AY851367_1(AY851367|pid:none) Liriomyza huidobrensis heat shock ...   250   6e-65
(P04810) RecName: Full=Heat shock protein 83; AltName: Full=HSP ...   248   3e-64
EU306519_1(EU306519|pid:none) Mythimna separata Hsp90 mRNA, comp...   248   3e-64
U57467_1(U57467|pid:none) Drosophila melanogaster heat shock pro...   248   3e-64
(P04811) RecName: Full=Heat shock protein 83; AltName: Full=HSP ...   248   3e-64
protein update 2009. 6.28
PSORT 

 psg: 0.50  gvh: 0.46  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 24.0 %: nuclear
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for VHD208 is cyt
5' end seq. ID VHD208F
5' end seq. 
>VHD208F.Seq
ACTTCACATTTAGGTCCTATATTCTAATTCATAATTAATTTTATTTGTTTTTTTTTGTAG
AACATAAAAAAATGGCTGAATCACAAGTTGAACGTTTCACATTCCAAGCTGAAATTAATC
AGCTTATGTCCCTTATTATTAATACTTTTTATTCAAATAAAGAAGTATTTTTAAGAGAAT
TGATTTCAAATGCATCTGATGCCTTAGATAAAATTCGTTACCAATCATTAACTGATGCAT
CAGTTTTGGAATCAAAAACTGAACTCGAAATTAAAATTATTCCAGATAAGACTGCCAAAA
CTCTTACACTCATTGATAGTGGTATTGGTATGACCAAAACCGATATGGTAAAGAATTTAG
GTACTATTGCTCGTTCAGGTACTAAAAACTTTATGGAACAATTACAAAGTGGTGCCGCTG
ATATCAGTATGATTGGTCAATTTGGTGTTGGTTTCTACTCTGCTTACTTAGTTGCCGATA
CTGTTATTGTTCACTCTAAAAACAATGATGATGAACAATACGTTTGGGAATCAAGTGCTG
GTGGTGAATTTACCATTGCTCTCGATCATACCGANNNNNNNNNN
Length of 5' end seq. 584
3' end seq. ID VHD208Z
3' end seq. 
>VHD208Z.Seq
NNNNNNNNNNAAGNAAAAAGCTGAACAAGATAAANCTGCCAATGAAGAATTACTCAAACA
AGTTAAANATGTATTGGGTGATAAAGTTGAAAAGGTAGTTCTCTCAACTCGTCTTGCCAA
CTCACCATGTGTTTTAGTTACCTCTGAATATGGTTGGTCAGCAAACATGGAACGTATCAT
GAAAGCTCAAGCTCTCCGTGACTCTTCAATGTCATCATACATGTCATCAAAGAAAACTTT
AGAATTAAATCCAGATCACCCAATCGTTAGAGATTTAGCCAAAAAAGCCGCCGAAAAAAG
TAAAACTTTCAAAGACTTTGTTTACTTATTATATGAAACTGCTCTCTTAACTTCAGGTTT
CTCATTAGATGAACCATCATCATTTGCTTCACGTATTCATCGTATGATTAAATTAGGTTT
AAGCATTCAAGATGATTCATCAGCAACAACTGAAGAATCAACAAACACAACAACCAGTGA
TGATATTCCACCATTAGAAGAAAACGATGAACCATCTGAAATGGAAAAAGTCGACTAGAT
TTAATTACTAGCCCTTTTGCTATCAATTTTTTGGAATATTGTTATATTATTATA
Length of 3' end seq. 594
Connected seq. ID VHD208P
Connected seq. 
>VHD208P.Seq
ACTTCACATTTAGGTCCTATATTCTAATTCATAATTAATTTTATTTGTTTTTTTTTGTAG
AACATAAAAAAATGGCTGAATCACAAGTTGAACGTTTCACATTCCAAGCTGAAATTAATC
AGCTTATGTCCCTTATTATTAATACTTTTTATTCAAATAAAGAAGTATTTTTAAGAGAAT
TGATTTCAAATGCATCTGATGCCTTAGATAAAATTCGTTACCAATCATTAACTGATGCAT
CAGTTTTGGAATCAAAAACTGAACTCGAAATTAAAATTATTCCAGATAAGACTGCCAAAA
CTCTTACACTCATTGATAGTGGTATTGGTATGACCAAAACCGATATGGTAAAGAATTTAG
GTACTATTGCTCGTTCAGGTACTAAAAACTTTATGGAACAATTACAAAGTGGTGCCGCTG
ATATCAGTATGATTGGTCAATTTGGTGTTGGTTTCTACTCTGCTTACTTAGTTGCCGATA
CTGTTATTGTTCACTCTAAAAACAATGATGATGAACAATACGTTTGGGAATCAAGTGCTG
GTGGTGAATTTACCATTGCTCTCGATCATACCGA----------AAGNAAAAAGCTGAAC
AAGATAAANCTGCCAATGAAGAATTACTCAAACAAGTTAAANATGTATTGGGTGATAAAG
TTGAAAAGGTAGTTCTCTCAACTCGTCTTGCCAACTCACCATGTGTTTTAGTTACCTCTG
AATATGGTTGGTCAGCAAACATGGAACGTATCATGAAAGCTCAAGCTCTCCGTGACTCTT
CAATGTCATCATACATGTCATCAAAGAAAACTTTAGAATTAAATCCAGATCACCCAATCG
TTAGAGATTTAGCCAAAAAAGCCGCCGAAAAAAGTAAAACTTTCAAAGACTTTGTTTACT
TATTATATGAAACTGCTCTCTTAACTTCAGGTTTCTCATTAGATGAACCATCATCATTTG
CTTCACGTATTCATCGTATGATTAAATTAGGTTTAAGCATTCAAGATGATTCATCAGCAA
CAACTGAAGAATCAACAAACACAACAACCAGTGATGATATTCCACCATTAGAAGAAAACG
ATGAACCATCTGAAATGGAAAAAGTCGACTAGATTTAATTACTAGCCCTTTTGCTATCAA
TTTTTTGGAATATTGTTATATTATTATA
Length of connected seq. 1158
Full length Seq ID -
Full length Seq. -
Length of full length seq. -