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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHD191
Library VH
(Link to library)
Clone ID VHD191
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16501-1
Original site URL
Representative seq. ID VHD191P
(Link to Original site)
Representative DNA sequence 
>VHD191 (VHD191Q) /CSM/VH/VHD1-D/VHD191Q.Seq.d/
AAGATAGTTGAACATGCAAATTACAGAAAAAGAAACAGTACAAGAAGAACAACAAAAATT
ACTATATCCACCACCTTCTTTTAGTACAAAATGTCATATATCATCAGTAGAACAATATAA
TGAAATGTATAAAGAAAGTATTGAATCACCAAATCAATTTTGGGATAAAAAAGCTAAAGA
ATTTTTAACTTGGTTTTCTGATTATACAACTGTTCAACATGGATCATTCGAAAAAGGTGA
TATTTCATGGTTTTTAAATGGTAAAATTAATGTTTCATATAATTGTATCGATAGACATTT
AAAAGAGAATGCAGATAAAGTTGCAATACTATTTGAAGGTGATGAAGAAACAATGGTTAA
AAAAGTTACATATAGAGAGATGTTTGAAGAGGTTTGTAGATTATCAAATCTTTTGATATC
ACTTGGCGTTGGTAAAGGAGATACGGTAGCGATCTATCTACCAAACACACCAACCGCCAT
TTATTCAATGTTAGCATGCGCTAGAATTGGAGCAATTCATTCAGTTATTTTTGCAGGXXX
XXXXXXXCTTGGCCAGGTATTGCTCGTTCAGTTTATCGTTCTCATGGTCGTTATCTTCAA
ACTTATATGACTCAATATAAAGGTCACTATTTCACTGGTGATGGTGTAAAACTTGACTCT
GATGGTTATTATTGGATCGAAGGTAGAGTAGATGATGTTATCAATGTTAGTGGTCATAGA
TTAGGTACTGCTGAATTAGAGAGTGCCCTCGTTGGTTGTTCAATTTGTGCAGAGGCTGCC
GTTGTTGGTTATCCTCATGATATCAAAGGTCAAGGTATTTTAGCATTTTGTACACTCAAA
GAAGGTTATCAAGAGGATGAATCAAATGTTATTATGATGTTAAAAAAAGAAGTTAGAAAT
GTAATTGGTCCATTTGCAACACCTGATGTAATTGTTATAACACCTTCACTTCCAAAAACT
CGTAGTGGTAAAATTATGAGAAGAATTCTTAGAAAAATTGGTTGTCATGAATCTTCTGCT
GAACAATTAGGTGATATTTCAACTTTAGCTGAACCTGAAGTTGTCAAACTTTTAATTAAA
AAGTTTCAAAAGTAATTCCAAAAACTCATTAAAAAAATAAAAAATAAAAAAAAAT
sequence update 2002.10.25
Translated Amino Acid sequence 
r*LNMQITEKETVQEEQQKLLYPPPSFSTKCHISSVEQYNEMYKESIESPNQFWDKKAKE
FLTWFSDYTTVQHGSFEKGDISWFLNGKINVSYNCIDRHLKENADKVAILFEGDEETMVK
KVTYREMFEEVCRLSNLLISLGVGKGDTVAIYLPNTPTAIYSMLACARIGAIHSVIFA--
-

---WPGIARSVYRSHGRYLQTYMTQYKGHYFTGDGVKLDSDGYYWIEGRVDDVINVSGHR
LGTAELESALVGCSICAEAAVVGYPHDIKGQGILAFCTLKEGYQEDESNVIMMLKKEVRN
VIGPFATPDVIVITPSLPKTRSGKIMRRILRKIGCHESSAEQLGDISTLAEPEVVKLLIK
KFQK*fqklikkiknkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
kivehanyrkrnstrrttkitisttff*ykmsyiisrti**nv*rky*itksilg*ks*r
ifnlvf*lyncstwiirkr*yfmvfkw*n*cfi*lyr*tfkrecr*scnti*r**rnng*
ksyi*rdv*rgl*iiksfditwrw*rrygsdlstkhtnrhlfnvsmr*nwsnsfsyfcr-
--

---lgqvllvqfivlmvvifkli*lnikvtislvmv*nltlmviigskve*mmlsmlvvi
d*vlln*rvpslvvqfvqrlpllvilmiskvkvf*hfvhskkvikrmnqmll*c*kkkle
m*lvhlqhlm*ll*hlhfqklvvvkl*eefleklvvmnlllnn*vifql*lnlklsnf*l
ksfksnsknslkk*kikkn

Frame B:
r*LNMQITEKETVQEEQQKLLYPPPSFSTKCHISSVEQYNEMYKESIESPNQFWDKKAKE
FLTWFSDYTTVQHGSFEKGDISWFLNGKINVSYNCIDRHLKENADKVAILFEGDEETMVK
KVTYREMFEEVCRLSNLLISLGVGKGDTVAIYLPNTPTAIYSMLACARIGAIHSVIFA--
-

---larycsfslsfswslssnlydsi*rslfhw*wckt*l*wllldrr*sr*cyqc*ws*
iryc*irecprwlfnlcrgcrcwlss*yqrsryfsilytqrrlsrg*ikcyydvkkrs*k
cnwsicnt*cncyntftskns*w*nyekns*knwls*ifc*tir*yfnfs*t*scqtfn*
kvskvipkth*knkk*kk

Frame C:
ds*tcklqkkkqykknnknyyihhlllvqnviyhq*nnimkcikkvlnhqinfgikklkn
f*lgfliiqlfnmdhskkvifhgf*mvklmfhiivsidi*krmqiklqyylkvmkkqwlk
klhierclkrfvdyqif*yhlalvkeir*rsiyqthqppfiqc*haleleqfiqlflq--
-

---WPGIARSVYRSHGRYLQTYMTQYKGHYFTGDGVKLDSDGYYWIEGRVDDVINVSGHR
LGTAELESALVGCSICAEAAVVGYPHDIKGQGILAFCTLKEGYQEDESNVIMMLKKEVRN
VIGPFATPDVIVITPSLPKTRSGKIMRRILRKIGCHESSAEQLGDISTLAEPEVVKLLIK
KFQK*fqklikkiknkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHD191 (VHD191Q) /CSM/VH/VHD1-D/VHD191Q.Seq.d/                       2099   0.0
VHO673 (VHO673Q) /CSM/VH/VHO6-D/VHO673Q.Seq.d/                       1068   0.0
SFF506 (SFF506Q) /CSM/SF/SFF5-A/SFF506Q.Seq.d/                       1068   0.0
AFE757 (AFE757Q) /CSM/AF/AFE7-C/AFE757Q.Seq.d/                       1068   0.0
CFJ158 (CFJ158Q) /CSM/CF/CFJ1-C/CFJ158Q.Seq.d/                       1066   0.0
VHJ869 (VHJ869Q) /CSM/VH/VHJ8-C/VHJ869Q.Seq.d/                       1065   0.0
VHE880 (VHE880Q) /CSM/VH/VHE8-D/VHE880Q.Seq.d/                       1065   0.0
VHE704 (VHE704Q) /CSM/VH/VHE7-A/VHE704Q.Seq.d/                       1065   0.0
CFI106 (CFI106Q) /CSM/CF/CFI1-A/CFI106Q.Seq.d/                       1065   0.0
CFH854 (CFH854Q) /CSM/CF/CFH8-C/CFH854Q.Seq.d/                       1065   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115612|AC115612.2 Dictyostelium discoideum chromosome 2 map 6245135-6357017 strain AX4, complete sequence.   662   0.0    4
EK365805|EK365805.1 1095469396550 Global-Ocean-Sampling_GS-31-01-01-1P3-1P8KB marine metagenome genomic clone 1061005863057 3', genomic survey sequence.    52   5e-25  6
AX489103|AX489103.1 Sequence 6403 from Patent WO02053728.          70   1e-23  6
EJ099531|EJ099531.1 1095462415177 Global-Ocean-Sampling_GS-26-01-01-1P3-1P6KB marine metagenome genomic clone 1061005738507 3', genomic survey sequence.    54   2e-21  4
AR547792|AR547792.1 Sequence 2923 from patent US 6747137.          70   7e-20  5
EJ696045|EJ696045.1 1092956018640 Global-Ocean-Sampling_GS-30-02-01-1P0-1P3KB marine metagenome genomic clone 1061001817991 5', genomic survey sequence.    54   4e-18  5
EK149325|EK149325.1 1095456040613 Global-Ocean-Sampling_GS-31-01-01-1P3-1P8KB marine metagenome genomic clone 1061005708305 3', genomic survey sequence.    58   7e-17  4
EK149307|EK149307.1 1095456040589 Global-Ocean-Sampling_GS-31-01-01-1P3-1P8KB marine metagenome genomic clone 1061005708209 3', genomic survey sequence.    58   7e-17  4
EK169689|EK169689.1 1095458069528 Global-Ocean-Sampling_GS-31-01-01-1P3-1P8KB marine metagenome genomic clone 1061005677636 3', genomic survey sequence.    58   1e-16  4
EJ267194|EJ267194.1 1095351023003 Global-Ocean-Sampling_GS-27-01-01-1P8-2P0KB marine metagenome genomic clone 1061005427363 3', genomic survey sequence.    54   3e-16  4
dna update 2007. 5.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC115612_37(AC115612|pid:none) Dictyostelium discoideum chromoso...   353   2e-96
(Q54Z60) RecName: Full=Acetyl-coenzyme A synthetase;          EC...   353   2e-96
CP000158_1385(CP000158|pid:none) Hyphomonas neptunium ATCC 15444...   218   4e-55
CP000927_111(CP000927|pid:none) Caulobacter sp. K31, complete ge...   216   2e-54
(Q6MNF1) RecName: Full=Acetyl-coenzyme A synthetase;          EC...   216   2e-54
(A1U2S9) RecName: Full=Acetyl-coenzyme A synthetase;          EC...   213   8e-54
DQ782753_1(DQ782753|pid:none) Polytomella parva plastid acetyl C...   213   1e-53
CP000157_932(CP000157|pid:none) Erythrobacter litoralis HTCC2594...   212   2e-53
(A0LG91) RecName: Full=Acetyl-coenzyme A synthetase;          EC...   211   4e-53
CP000633_3221(CP000633|pid:none) Agrobacterium vitis S4 chromoso...   211   4e-53
protein update 2009. 6.28
PSORT 

 psg: 0.75  gvh: 0.32  alm: 0.35  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 40.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: peroxisomal

>> prediction for VHD191 is cyt
5' end seq. ID VHD191F
5' end seq. 
>VHD191F.Seq
AAGATAGTTGAACATGCAAATTACAGAAAAAGAAACAGTACAAGAAGAACAACAAAAATT
ACTATATCCACCACCTTCTTTTAGTACAAAATGTCATATATCATCAGTAGAACAATATAA
TGAAATGTATAAAGAAAGTATTGAATCACCAAATCAATTTTGGGATAAAAAAGCTAAAGA
ATTTTTAACTTGGTTTTCTGATTATACAACTGTTCAACATGGATCATTCGAAAAAGGTGA
TATTTCATGGTTTTTAAATGGTAAAATTAATGTTTCATATAATTGTATCGATAGACATTT
AAAAGAGAATGCAGATAAAGTTGCAATACTATTTGAAGGTGATGAAGAAACAATGGTTAA
AAAAGTTACATATAGAGAGATGTTTGAAGAGGTTTGTAGATTATCAAATCTTTTGATATC
ACTTGGCGTTGGTAAAGGAGATACGGTAGCGATCTATCTACCAAACACACCAACCGCCAT
TTATTCAATGTTAGCATGCGCTAGAATTGGAGCAATTCATTCAGTTATTTTTGCAGGNNN
NNNNNNN
Length of 5' end seq. 547
3' end seq. ID VHD191Z
3' end seq. 
>VHD191Z.Seq
NNNNNNNNNNCTTGGCCAGGTATTGCTCGTTCAGTTTATCGTTCTCATGGTCGTTATCTT
CAAACTTATATGACTCAATATAAAGGTCACTATTTCACTGGTGATGGTGTAAAACTTGAC
TCTGATGGTTATTATTGGATCGAAGGTAGAGTAGATGATGTTATCAATGTTAGTGGTCAT
AGATTAGGTACTGCTGAATTAGAGAGTGCCCTCGTTGGTTGTTCAATTTGTGCAGAGGCT
GCCGTTGTTGGTTATCCTCATGATATCAAAGGTCAAGGTATTTTAGCATTTTGTACACTC
AAAGAAGGTTATCAAGAGGATGAATCAAATGTTATTATGATGTTAAAAAAAGAAGTTAGA
AATGTAATTGGTCCATTTGCAACACCTGATGTAATTGTTATAACACCTTCACTTCCAAAA
ACTCGTAGTGGTAAAATTATGAGAAGAATTCTTAGAAAAATTGGTTGTCATGAATCTTCT
GCTGAACAATTAGGTGATATTTCAACTTTAGCTGAACCTGAAGTTGTCAAACTTTTAATT
AAAAAGTTTCAAAAGTAATTCCAAAAACTCATTAAAAAAATAAAAAATAAAAAAAAAT
Length of 3' end seq. 598
Connected seq. ID VHD191P
Connected seq. 
>VHD191P.Seq
AAGATAGTTGAACATGCAAATTACAGAAAAAGAAACAGTACAAGAAGAACAACAAAAATT
ACTATATCCACCACCTTCTTTTAGTACAAAATGTCATATATCATCAGTAGAACAATATAA
TGAAATGTATAAAGAAAGTATTGAATCACCAAATCAATTTTGGGATAAAAAAGCTAAAGA
ATTTTTAACTTGGTTTTCTGATTATACAACTGTTCAACATGGATCATTCGAAAAAGGTGA
TATTTCATGGTTTTTAAATGGTAAAATTAATGTTTCATATAATTGTATCGATAGACATTT
AAAAGAGAATGCAGATAAAGTTGCAATACTATTTGAAGGTGATGAAGAAACAATGGTTAA
AAAAGTTACATATAGAGAGATGTTTGAAGAGGTTTGTAGATTATCAAATCTTTTGATATC
ACTTGGCGTTGGTAAAGGAGATACGGTAGCGATCTATCTACCAAACACACCAACCGCCAT
TTATTCAATGTTAGCATGCGCTAGAATTGGAGCAATTCATTCAGTTATTTTTGCAGG---
-------CTTGGCCAGGTATTGCTCGTTCAGTTTATCGTTCTCATGGTCGTTATCTTCAA
ACTTATATGACTCAATATAAAGGTCACTATTTCACTGGTGATGGTGTAAAACTTGACTCT
GATGGTTATTATTGGATCGAAGGTAGAGTAGATGATGTTATCAATGTTAGTGGTCATAGA
TTAGGTACTGCTGAATTAGAGAGTGCCCTCGTTGGTTGTTCAATTTGTGCAGAGGCTGCC
GTTGTTGGTTATCCTCATGATATCAAAGGTCAAGGTATTTTAGCATTTTGTACACTCAAA
GAAGGTTATCAAGAGGATGAATCAAATGTTATTATGATGTTAAAAAAAGAAGTTAGAAAT
GTAATTGGTCCATTTGCAACACCTGATGTAATTGTTATAACACCTTCACTTCCAAAAACT
CGTAGTGGTAAAATTATGAGAAGAATTCTTAGAAAAATTGGTTGTCATGAATCTTCTGCT
GAACAATTAGGTGATATTTCAACTTTAGCTGAACCTGAAGTTGTCAAACTTTTAATTAAA
AAGTTTCAAAAGTAATTCCAAAAACTCATTAAAAAAATAAAAAATAAAAAAAAAT
Length of connected seq. 1125
Full length Seq ID -
Full length Seq. -
Length of full length seq. -