>VHD187 (VHD187Q) /CSM/VH/VHD1-D/VHD187Q.Seq.d/
ACTCAACAGCCTGCCTCCGTTTTGTGTTTGGTTCTTTTATACCAAATAAACAAGTTTTAT
GGCAAGAAGCTCATAATAAACATACATGTGCCTTTAATCAATCTGTAATCTGTTCTATTA
CACGATTTTCATGCAGTCACAACAACTAAAATTTTCAATAACACAACAATACTCACACCA
TTTTTTTTTTTTNAAAATTTTTTTTTTTTTTTNNTXXXXXXXXXX

STACLRFVFGSFIPNKQVLWQEAHNKHTCAFNQSVICSITRFSCSHNN*nfq*hnnthti
fffxkfffff---

Frame A:
tqqpasvlclvllyqinkfygkkliinihvplinl*svllhdfhavtttkifnnttiltp
ffffxnffffx---


Frame B:
lnslppfcvwffytk*tsfmarss**tymcl*sicnlfyytifmqsqqlkfsitqqyshh
fffxkiffffx---


Frame C:
STACLRFVFGSFIPNKQVLWQEAHNKHTCAFNQSVICSITRFSCSHNN*nfq*hnnthti
fffxkfffff---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHD187 (VHD187Q) /CSM/VH/VHD1-D/VHD187Q.Seq.d/                        357   4e-98
VFI844 (VFI844Q) /CSM/VF/VFI8-B/VFI844Q.Seq.d/                        301   2e-81
CFF123 (CFF123Q) /CSM/CF/CFF1-A/CFF123Q.Seq.d/                        301   2e-81
SHI130 (SHI130Q) /CSM/SH/SHI1-B/SHI130Q.Seq.d/                        299   9e-81
AFJ411 (AFJ411Q) /CSM/AF/AFJ4-A/AFJ411Q.Seq.d/                        295   1e-79
VHP105 (VHP105Q) /CSM/VH/VHP1-A/VHP105Q.Seq.d/                        293   6e-79
AFL622 (AFL622Q) /CSM/AF/AFL6-A/AFL622Q.Seq.d/                        291   2e-78
AFA221 (AFA221Q) /CSM/AF/AFA2-A/AFA221Q.Seq.d/                        291   2e-78
VHC315 (VHC315Q) /CSM/VH/VHC3-A/VHC315Q.Seq.d/                        285   1e-76
CHP177 (CHP177Q) /CSM/CH/CHP1-D/CHP177Q.Seq.d/                        285   1e-76

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AJ699379|AJ699379.1 Dictyostelium discoideum r18 snoRNA, clone DdR-18.   289   2e-74  1
AL139421|AL139421.12 Human DNA sequence from clone RP4-717I23 on chromosome 1p21.2-22.3.    40   0.21   4
CD551710|CD551710.1 B0332D04-5 NIA Mouse E9.5 Whole Embryo cDNA Library (Long) Mus musculus cDNA clone NIA:B0332D04 IMAGE:30432135 5', mRNA sequence.    46   0.40   1
AI614922|AI614922.1 mm44a09.y1 Stratagene mouse melanoma (#937312) Mus musculus cDNA clone IMAGE:524344 5', mRNA sequence.    46   0.40   1
AA067926|AA067926.1 mm44a09.r1 Stratagene mouse melanoma (#937312) Mus musculus cDNA clone IMAGE:524344 5', mRNA sequence.    46   0.40   1
BD460229|BD460229.1 Diagnosis of Diseases Associated with Cell Cycle.    46   0.40   1
BD452151|BD452151.1 Diagnosis of Diseases Associated with Cell Cycle.    46   0.40   1
AX348576|AX348576.1 Sequence 34 from Patent WO0202807.             46   0.40   1
AX345163|AX345163.1 Sequence 234 from Patent WO0200928.            46   0.40   1
AX344179|AX344179.1 Sequence 26 from Patent WO0200926.             46   0.40   1

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 303,587,051

 psg: 0.94  gvh: 0.39  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.36  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 28.0 %: nuclear
	 16.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for VHD187 is cyt

>VHD187F.Seq
ACTCAACAGCCTGCCTCCGTTTTGTGTTTGGTTCTTTTATACCAAATAAACAAGTTTTAT
GGCAAGAAGCTCATAATAAACATACATGTGCCTTTAATCAATCTGTAATCTGTTCTATTA
CACGATTTTCATGCAGTCACAACAACTAAAATTTTCAATAACACAACAATACTCACACCA
TTTTTTTTTTTTNAAAATTTTTTTTTTTTTTTNNTNNNNNNNNNN