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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHD183
Library VH
(Link to library)
Clone ID VHD183
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10823-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VHD183 (VHD183Q) /CSM/VH/VHD1-D/VHD183Q.Seq.d/
XXXXXXXXXXGNTGATGGTATTNCAATNACCACTAAAATCTCTAGAACTTTNCCATTTGA
ATTGATTATTGCCNTGNATTCTTCATNACAAGCAANTGGTCAATTATTNNTGGATGATGG
TGAATCNATTCAAACNTATGNTGATNATAAATANTNTTTCATCCAATTCGATGNTGTNTC
CTCANCCATNTTCATTTGCNTACAAATTACAATCAACCATTCTCAATAACAATTATAATG
GTACCGNTTNTTTAATCATTAATTCTATCCAAATATNCGGNTCGCCATCAGTTCANCAAG
TCATTTGTTAAGTGGTAGCCCAATCAATTCATCTAATGCTGTTTCTGATTCAACTCTNTN
NGTTTCNAATTTNC
sequence update 2002. 9.10
Translated Amino Acid sequence 
---xmvxqxplkslelxhln*LLPXILHXKQXVNYXWMMVNXFKXMXXINXXSSNSMXXP
XPXSFAYKLQSTILNNNYNGTXXLIINSIQIXGSPSVXQVIC*vvaqsihlmlfliqlxx
fxix
Translated Amino Acid sequence (All Frames) 
Frame A:
---xmvxqxplkslelxhln*LLPXILHXKQXVNYXWMMVNXFKXMXXINXXSSNSMXXP
XPXSFAYKLQSTILNNNYNGTXXLIINSIQIXGSPSVXQVIC*vvaqsihlmlfliqlxx
fxix


Frame B:
---*wyxnxh*nl*nfxi*idycxxffxtsxwsiixg*w*ixsnxx*x*ixfhpirxcxl
xhxhlxtnynqpfsitiimvpxx*slilskyxxrhqfxksfvkw*pnqfi*ccf*fnsxx
fxf


Frame C:
---dgixxttkisrtxpfeliiaxxssxqaxgqlxxddgesiqtyxdxkxxfiqfdxvss
xxficxqitinhsq*ql*wyrxfnh*fypnxrxaissxshllsgspinssnavsdstlxv
snx
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHD183 (VHD183Q) /CSM/VH/VHD1-D/VHD183Q.Seq.d/                        541   e-153
CHG312 (CHG312Q) /CSM/CH/CHG3-A/CHG312Q.Seq.d/                        470   e-132
VHA108 (VHA108Q) /CSM/VH/VHA1-A/VHA108Q.Seq.d/                        468   e-131
SHJ811 (SHJ811Q) /CSM/SH/SHJ8-A/SHJ811Q.Seq.d/                        468   e-131
SHC731 (SHC731Q) /CSM/SH/SHC7-B/SHC731Q.Seq.d/                        468   e-131
CHS485 (CHS485Q) /CSM/CH/CHS4-D/CHS485Q.Seq.d/                        468   e-131
CHS185 (CHS185Q) /CSM/CH/CHS1-D/CHS185Q.Seq.d/                        468   e-131
CHR858 (CHR858Q) /CSM/CH/CHR8-C/CHR858Q.Seq.d/                        468   e-131
CHR138 (CHR138Q) /CSM/CH/CHR1-B/CHR138Q.Seq.d/                        468   e-131
CHM276 (CHM276Q) /CSM/CH/CHM2-D/CHM276Q.Seq.d/                        468   e-131
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC137253|AC137253.1 Rattus norvegicus clone CH230-unknown, WORKING DRAFT SEQUENCE, 3 unordered pieces.    46   0.69   1
AC135296|AC135296.1 Rattus norvegicus clone CH230-491I22, *** SEQUENCING IN PROGRESS ***, 59 unordered pieces.    46   0.69   1
AC118787|AC118787.5 Rattus norvegicus clone CH230-433F6, *** SEQUENCING IN PROGRESS ***, 14 unordered pieces.    46   0.69   1
DE209382|DE209382.1 Branchiostoma floridae DNA, clone: CH302-098_H10_TJ, genomic survey sequence.    44   2.7    1
dna update 2007. 5.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L25926_1(L25926|pid:none) Rat sucrase-isomaltase (SI) mRNA, comp...    38   0.018
(P23739) RecName: Full=Sucrase-isomaltase, intestinal; Contains:...    38   0.018
(O62653) RecName: Full=Sucrase-isomaltase, intestinal; Contains:...    37   0.038
EU937530_1(EU937530|pid:none) Mus musculus sucrase-isomaltase mR...    36   0.11
AB428422_1(AB428422|pid:none) Felis catus SI mRNA for sucrase-is...    36   0.47
BC115034_1(BC115034|pid:none) Homo sapiens sucrase-isomaltase (a...    35   0.81
(P14410) RecName: Full=Sucrase-isomaltase, intestinal; Contains:...    35   0.81
BC116452_1(BC116452|pid:none) Homo sapiens sucrase-isomaltase (a...    35   0.81
T22575(T22575)hypothetical protein F53F4.8 - Caenorhabditis eleg...    35   0.81
AM920437_1235(AM920437|pid:none) Penicillium chrysogenum Wiscons...    35   0.81
protein update 2009. 6.28
PSORT 

 psg: 0.86  gvh: 0.38  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.44  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: mitochondrial
	 20.0 %: cytoplasmic
	 16.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for VHD183 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VHD183Z
3' end seq. 
>VHD183Z.Seq
NNNNNNNNNNGNTGATGGTATTNCAATNACCACTAAAATCTCTAGAACTTTNCCATTTGA
ATTGATTATTGCCNTGNATTCTTCATNACAAGCAANTGGTCAATTATTNNTGGATGATGG
TGAATCNATTCAAACNTATGNTGATNATAAATANTNTTTCATCCAATTCGATGNTGTNTC
CTCANCCATNTTCATTTGCNTACAAATTACAATCAACCATTCTCAATAACAATTATAATG
GTACCGNTTNTTTAATCATTAATTCTATCCAAATATNCGGNTCGCCATCAGTTCANCAAG
TCATTTGTTAAGTGGTAGCCCAATCAATTCATCTAATGCTGTTTCTGATTCAACTCTNTN
NGTTTCNAATTTNC
Length of 3' end seq. 374
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -