VHD171
Library VH
(Link to library)
Clone ID VHD171
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16299-1
Original site URL
Representative seq. ID VHD171P
(Link to Original site)
Representative DNA sequence
>VHD171 (VHD171Q) /CSM/VH/VHD1-C/VHD171Q.Seq.d/
ATAAAACATACAAAATGTCAAAAAATTCAGGTTTACCATCATTCGCTTCAACTGAAGCTG
ATAATTCACAAGGTTTTGTATTATCAGTATCAGGTCCAGTCGTAATTGCTAATCAATTAG
CTGGTGCTGCTATGTACGAGTTGGTTCGTGTAGGTCACAATCAATTAGTTGGTGAAATTA
TTAGATTAGAAGAAGATACTGCCACAATTCAAGTTTACGAAGAAACTTCTGGTTTAACTG
TTGGTGATCCAGTATTAAGAACTCATAAACCATTAACAGTTGAATTAGGTCCAGGTATTA
TGAATAATATTTTTGATGGTATTCAACGTCCATTAAATGCAATTGCAGAGATTACAAAAG
GTATTTATATTCCAAGAGGTATTAATACTCCATCATTAAATAGAACTATTAAATGGCCAT
ATCAACCAGATACCAAATTAAAAGTTGGTGACAATGTTAGTGGTGGTGATATTTTTGGTC
AAGTTGTTGAAAATAATTTAATCATCCATAAGATTATGGTTCCACCAAAGGAAATGGGTA
CCATCGTAGAGATTGCACCAGCTGGTGAATACACTTTGGATCATGCACTTTXXXXXXXXX
XCTGGTCGTGTATCATGTATTGGTCATCCAACTCGTATTGGTTCAGTTACAATNGTCGGT
GCAGTCTCTCCCCCAGGTGGAGATTTTGCTGATCCAGTCACTGCTGCCACTTTAGGTATC
GTCCAAGTATTCTGGGGTTTAGATAAAAAATTAGCACAACGTAAACATTTCCCATCCATC
AATTGGTTAATTTCTTTCTCCAAATATATGCAAGCTCTTGATACTCATTATGATCAAATG
GATCCAGAATTCGTTCCACTCCGTACCAGAGCCAAGGAAATTCTTCAAATGGAAGAAGAT
CTCTCTGAAATCGTCCAATTGGTCGGTCAAGATTCTTTAGGTGAATCTGAAAAGATTACC
ATTGAAGTCGCTCGTATTATTCGTGATGATTTCCTTCAACAAAATGGTTTCTCTCCATAC
GATAAATGTTGTCCATTCTTCAAGACCGTTTGGATGTTAAAGAATATGATGACTTTCTAC
AATTTAGCACAAAAAGCTGTTGAATCAAGTACCGCTGATAATAAAGTTACTTGGAATCAA
ATTAAAAATGAATTAAAAGAAATCATTCACAGAATTACTTCAATGAAATTCCAAGATCCA
ACTGACGGTGAACAAACTTTAACTGCTCATTTCTCAACTCTCAATGAAGATATCATTACT
GCTTTCAGAAACTTTAGTGATTTAGTTTAAAATAAATGATATTAATAAAAAATAATATAA
ATATATAANAGTAAATAAAAAAATAAAAAAAG
sequence update 2002.10.25
Translated Amino Acid sequence
KTYKMSKNSGLPSFASTEADNSQGFVLSVSGPVVIANQLAGAAMYELVRVGHNQLVGEII
RLEEDTATIQVYEETSGLTVGDPVLRTHKPLTVELGPGIMNNIFDGIQRPLNAIAEITKG
IYIPRGINTPSLNRTIKWPYQPDTKLKVGDNVSGGDIFGQVVENNLIIHKIMVPPKEMGT
IVEIAPAGEYTLDHAL---

---GRVSCIGHPTRIGSVTXVGAVSPPGGDFADPVTAATLGIVQVFWGLDKKLAQRKHFP
SINWLISFSKYMQALDTHYDQMDPEFVPLRTRAKEILQMEEDLSEIVQLVGQDSLGESEK
ITIEVARIIRDDFLQQNGFSPYDKCCPFFKTVWMLKNMMTFYNLAQKAVESSTADNKVTW
NQIKNELKEIIHRITSMKFQDPTDGEQTLTAHFSTLNEDIITAFRNFSDLV*nk*y**ki
i*iyxsk*knkk


Translated Amino Acid sequence (All Frames)
Frame A:
ikhtkcqkiqvyhhslqlkliihkvlyyqyqvqs*llin*lvllctswfv*vtin*lvkl
ld*kkilpqfkftkkllv*llviqy*elinh*qln*vqvl*iiflmvfnvh*mqlqrlqk
vfifqevlilhh*iellnghinqipn*klvtmlvvviflvkllkii*ssirlwfhqrkwv
ps*rlhqlvntlwimhf---

---lvvyhvlviqlvlvqlqxsvqslpqveilliqsllpl*vsskysgv*ikn*hnvnis
hpsig*flspnickllilimikwiqnsfhsvpeprkffkwkkislkssnwsvkil*vnlk
rlplkslvlfvmisfnkmvslhtinvvhssrpfgc*ri**lsti*hkkllnqvpliikll
giklkmn*kksftellq*nskiqltvnkl*llisqlsmkislllsetlvi*fkindinkk
*ykyixvnkkikk

Frame B:
*niqnvkkfrftiirfn*s**ftrfciisirssrnc*siswccyvrvgscrsqsisw*ny
*irrrychnsslrrnfwfncw*ssikns*tins*irsryye*yf*wystsikcncrdykr
ylyskry*ysiik*ny*maistryqiksw*qc*ww*yfwssc*k*fnhp*dygstkgngy
hrrdctsw*ihfgsct---

---wscimywssnsywfsynxrcslsprwrfc*sshcchfryrpsilgfr*kistt*tfp
ihqlvnfflqiyass*ysl*sngsrirstpyqsqgnssngrrsl*nrpigrsrffr*i*k
dyh*srsyys**fpstkwflsir*mlsilqdrldvkeyddflqfstksc*ikyr***syl
esn*k*ikrnhsqnyfneiprsn*r*tnfncsflnsq*ryhycfqkl**fslk*milikn
nini*x*ikk*kk

Frame C:
KTYKMSKNSGLPSFASTEADNSQGFVLSVSGPVVIANQLAGAAMYELVRVGHNQLVGEII
RLEEDTATIQVYEETSGLTVGDPVLRTHKPLTVELGPGIMNNIFDGIQRPLNAIAEITKG
IYIPRGINTPSLNRTIKWPYQPDTKLKVGDNVSGGDIFGQVVENNLIIHKIMVPPKEMGT
IVEIAPAGEYTLDHAL---

---GRVSCIGHPTRIGSVTXVGAVSPPGGDFADPVTAATLGIVQVFWGLDKKLAQRKHFP
SINWLISFSKYMQALDTHYDQMDPEFVPLRTRAKEILQMEEDLSEIVQLVGQDSLGESEK
ITIEVARIIRDDFLQQNGFSPYDKCCPFFKTVWMLKNMMTFYNLAQKAVESSTADNKVTW
NQIKNELKEIIHRITSMKFQDPTDGEQTLTAHFSTLNEDIITAFRNFSDLV*nk*y**ki
i*iyxsk*knkk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHD171 (VHD171Q) /CSM/VH/VHD1-C/VHD171Q.Seq.d/ 2486 0.0
VHP385 (VHP385Q) /CSM/VH/VHP3-D/VHP385Q.Seq.d/ 1354 0.0
SLE162 (SLE162Q) /CSM/SL/SLE1-C/SLE162Q.Seq.d/ 1354 0.0
VFC688 (VFC688Q) /CSM/VF/VFC6-D/VFC688Q.Seq.d/ 1352 0.0
VFC742 (VFC742Q) /CSM/VF/VFC7-B/VFC742Q.Seq.d/ 1350 0.0
VHH516 (VHH516Q) /CSM/VH/VHH5-A/VHH516Q.Seq.d/ 1348 0.0
VHL630 (VHL630Q) /CSM/VH/VHL6-B/VHL630Q.Seq.d/ 1346 0.0
VFC543 (VFC543Q) /CSM/VF/VFC5-B/VFC543Q.Seq.d/ 1344 0.0
VHB101 (VHB101Q) /CSM/VH/VHB1-A/VHB101Q.Seq.d/ 1342 0.0
VHJ289 (VHJ289Q) /CSM/VH/VHJ2-D/VHJ289Q.Seq.d/ 1338 0.0

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U49169|U49169.1 Dictyostelium discoideum V-ATPase A subunit (vatA) mRNA, complete cds. 1354 0.0 1
L43963|L43963.1 Dictyostelium discoideum vacuolar proton transporting ATPase subunit A mRNA, partial cds. 460 0.0 2
AB093510|AB093510.1 Saccharomyces exiguus VMA1-2 gene for vacuolar membrane ATPase subunit a precursor 2, partial cds, strain:IFO1128. 80 4e-41 7
AB093509|AB093509.1 Saccharomyces exiguus VMA1-1 gene for vacuolar membrane ATPase subunit a precursor 1, partial cds, strain:IFO1128. 74 7e-35 7
BI772943|BI772943.1 kq08f06.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to TR:Q9XW92 Q9XW92 Y49A3A.2 PROTEIN ;, mRNA sequence. 115 2e-32 3
AB093511|AB093511.1 Saccharomyces unisporus VMA1 gene for vacuolar membrane ATPase subunit a precursor, partial cds, strain:IFO0316. 74 4e-28 4
AR548187|AR548187.1 Sequence 3318 from patent US 6747137. 62 5e-27 5
DY892011|DY892011.1 CeleSEQ8899 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ8899, mRNA sequence. 117 1e-25 3
CR382136|CR382136.1 Debaryomyces hansenii chromosome D of strain CBS767 of Debaryomyces hansenii. 76 1e-25 4
AB093506|AB093506.1 Kluyveromyces lactis VMA1 gene for vacuolar membrane ATPase subunit a precursor, partial cds, strain:IFO1267. 58 2e-25 8
dna update 2007. 5. 9
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P54647) RecName: Full=V-type proton ATPase catalytic subunit A;... 462 e-128
(P38607) Vacuolar ATP synthase catalytic subunit A, osteoclast i... 318 2e-85
A56807(A56807) H+-transporting two-sector ATPase (EC 3.6.3.14), ... 317 5e-85
I50715(I50715) A2 isoform of vacuolar H+-ATPase subunit A - chic... 315 2e-84
(Q90647) RecName: Full=V-type proton ATPase catalytic subunit A;... 315 2e-84
AX407287_1(AX407287|pid:none) Sequence 58 from Patent WO0226984. 315 3e-84
(P31404) RecName: Full=V-type proton ATPase catalytic subunit A;... 314 4e-84
M80430_1(M80430|pid:none) Bovine vacuolar H+-ATPase A subunit mR... 314 4e-84
BC105145_1(BC105145|pid:none) Bos taurus ATPase, H+ transporting... 314 4e-84
(P31400) RecName: Full=V-type proton ATPase catalytic subunit A;... 313 7e-84
protein update 2009. 6.28
PSORT

psg: 0.87 gvh: 0.58 alm: 0.38 top: 0.20 tms: 0.00 mit: 0.35 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: extracellular, including cell wall
24.0 %: cytoplasmic
20.0 %: nuclear
4.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for VHD171 is exc

5' end seq. ID VHD171F
5' end seq.
>VHD171F.Seq
ATAAAACATACAAAATGTCAAAAAATTCAGGTTTACCATCATTCGCTTCAACTGAAGCTG
ATAATTCACAAGGTTTTGTATTATCAGTATCAGGTCCAGTCGTAATTGCTAATCAATTAG
CTGGTGCTGCTATGTACGAGTTGGTTCGTGTAGGTCACAATCAATTAGTTGGTGAAATTA
TTAGATTAGAAGAAGATACTGCCACAATTCAAGTTTACGAAGAAACTTCTGGTTTAACTG
TTGGTGATCCAGTATTAAGAACTCATAAACCATTAACAGTTGAATTAGGTCCAGGTATTA
TGAATAATATTTTTGATGGTATTCAACGTCCATTAAATGCAATTGCAGAGATTACAAAAG
GTATTTATATTCCAAGAGGTATTAATACTCCATCATTAAATAGAACTATTAAATGGCCAT
ATCAACCAGATACCAAATTAAAAGTTGGTGACAATGTTAGTGGTGGTGATATTTTTGGTC
AAGTTGTTGAAAATAATTTAATCATCCATAAGATTATGGTTCCACCAAAGGAAATGGGTA
CCATCGTAGAGATTGCACCAGCTGGTGAATACACTTTGGATCATGCACTTTNNNNNNNNN
N
Length of 5' end seq. 601
3' end seq. ID VHD171Z
3' end seq.
>VHD171Z.Seq
NNNNNNNNNNCTGGTCGTGTATCATGTATTGGTCATCCAACTCGTATTGGTTCAGTTACA
ATNGTCGGTGCAGTCTCTCCCCCAGGTGGAGATTTTGCTGATCCAGTCACTGCTGCCACT
TTAGGTATCGTCCAAGTATTCTGGGGTTTAGATAAAAAATTAGCACAACGTAAACATTTC
CCATCCATCAATTGGTTAATTTCTTTCTCCAAATATATGCAAGCTCTTGATACTCATTAT
GATCAAATGGATCCAGAATTCGTTCCACTCCGTACCAGAGCCAAGGAAATTCTTCAAATG
GAAGAAGATCTCTCTGAAATCGTCCAATTGGTCGGTCAAGATTCTTTAGGTGAATCTGAA
AAGATTACCATTGAAGTCGCTCGTATTATTCGTGATGATTTCCTTCAACAAAATGGTTTC
TCTCCATACGATAAATGTTGTCCATTCTTCAAGACCGTTTGGATGTTAAAGAATATGATG
ACTTTCTACAATTTAGCACAAAAAGCTGTTGAATCAAGTACCGCTGATAATAAAGTTACT
TGGAATCAAATTAAAAATGAATTAAAAGAAATCATTCACAGAATTACTTCAATGAAATTC
CAAGATCCAACTGACGGTGAACAAACTTTAACTGCTCATTTCTCAACTCTCAATGAAGAT
ATCATTACTGCTTTCAGAAACTTTAGTGATTTAGTTTAAAATAAATGATATTAATAAAAA
ATAATATAAATATATAANAGTAAATAAAAAAATAAAAAAAG
Length of 3' end seq. 761
Connected seq. ID VHD171P
Connected seq.
>VHD171P.Seq
ATAAAACATACAAAATGTCAAAAAATTCAGGTTTACCATCATTCGCTTCAACTGAAGCTG
ATAATTCACAAGGTTTTGTATTATCAGTATCAGGTCCAGTCGTAATTGCTAATCAATTAG
CTGGTGCTGCTATGTACGAGTTGGTTCGTGTAGGTCACAATCAATTAGTTGGTGAAATTA
TTAGATTAGAAGAAGATACTGCCACAATTCAAGTTTACGAAGAAACTTCTGGTTTAACTG
TTGGTGATCCAGTATTAAGAACTCATAAACCATTAACAGTTGAATTAGGTCCAGGTATTA
TGAATAATATTTTTGATGGTATTCAACGTCCATTAAATGCAATTGCAGAGATTACAAAAG
GTATTTATATTCCAAGAGGTATTAATACTCCATCATTAAATAGAACTATTAAATGGCCAT
ATCAACCAGATACCAAATTAAAAGTTGGTGACAATGTTAGTGGTGGTGATATTTTTGGTC
AAGTTGTTGAAAATAATTTAATCATCCATAAGATTATGGTTCCACCAAAGGAAATGGGTA
CCATCGTAGAGATTGCACCAGCTGGTGAATACACTTTGGATCATGCACTTT---------
-CTGGTCGTGTATCATGTATTGGTCATCCAACTCGTATTGGTTCAGTTACAATNGTCGGT
GCAGTCTCTCCCCCAGGTGGAGATTTTGCTGATCCAGTCACTGCTGCCACTTTAGGTATC
GTCCAAGTATTCTGGGGTTTAGATAAAAAATTAGCACAACGTAAACATTTCCCATCCATC
AATTGGTTAATTTCTTTCTCCAAATATATGCAAGCTCTTGATACTCATTATGATCAAATG
GATCCAGAATTCGTTCCACTCCGTACCAGAGCCAAGGAAATTCTTCAAATGGAAGAAGAT
CTCTCTGAAATCGTCCAATTGGTCGGTCAAGATTCTTTAGGTGAATCTGAAAAGATTACC
ATTGAAGTCGCTCGTATTATTCGTGATGATTTCCTTCAACAAAATGGTTTCTCTCCATAC
GATAAATGTTGTCCATTCTTCAAGACCGTTTGGATGTTAAAGAATATGATGACTTTCTAC
AATTTAGCACAAAAAGCTGTTGAATCAAGTACCGCTGATAATAAAGTTACTTGGAATCAA
ATTAAAAATGAATTAAAAGAAATCATTCACAGAATTACTTCAATGAAATTCCAAGATCCA
ACTGACGGTGAACAAACTTTAACTGCTCATTTCTCAACTCTCAATGAAGATATCATTACT
GCTTTCAGAAACTTTAGTGATTTAGTTTAAAATAAATGATATTAATAAAAAATAATATAA
ATATATAANAGTAAATAAAAAAATAAAAAAAG
Length of connected seq. 1342
Full length Seq ID -
Full length Seq. -
Length of full length seq. -