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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHD165
Library VH
(Link to library)
Clone ID VHD165
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10796-1
Original site URL
Representative seq. ID VHD165P
(Link to Original site)
Representative DNA sequence 
>VHD165 (VHD165Q) /CSM/VH/VHD1-C/VHD165Q.Seq.d/
ATTTTTCAACTAATTTCCCAACAATTAATAGAACTCTGAAAATAAATAAGAAATTAAAAA
TGAAATTTTATATTGAAGATCTTTTAGTATATTTTCCATATTCATATATTTATCCAGAAC
AGTATAGTTATATGGTAGCATTAAAGAGATCATTAGATAATGGTGGACCATGTATATTAG
AGATGCCAAGTGGTACTGGTAAGACGGTATCATTGCTATCGTTAATTTCATCATATCAAG
TTAAAAATCCATCAATTAAATTAATTTATTGTTCAAGAACAGTGCCAGAGATTGAACAAG
CTACAGAAGAGGCTAGAAGGGTATTACAATATAGGAATTCAGAAATGGGGGAAGAGTCAC
CTAAAACGTTATGTATGTCAATGTCGTCACGTCGTAACCTTTGTATTCAACCAAGGGTAT
CGGAAGAGAGGGATGGTAAAGTGGTCGATGCCCTCTGTAGAGAGTTGACATCCTCATGGA
ATAGGGAGTCACCCACGAGTGAAAAATGTAAATTTTTCGAGAATTTTGAATCTAACGGAA
AGGAAATCCTACTAXXXXXXXXXXAACTTCAGATCNTGCCGAATCAGCATTGGCATTGCA
AAACTACAAGAAAGCATGCGACAGTGGTAGAGGTGCNGTACTACTTTCAGTGGCAAGAGG
TAAGGTGTCTGAGGGTATCGATTTCGATAATCAGTATGGCAGATGCGTCATTCTCTATGG
CATACCTTACATCAATACCGAGAGTAAGGTATTACGTGCACGTTTGGAATTCCTTAGAGA
TCGTTATCAAATTAGAGAGAATGAATTCCTAACTTTTGATGCAATGAGAACTGCTTCTCA
ATGTGTTGGTAGAGTCATTCGTGGTAAATCCGATTATGGTATCATGATCTTTGCTGATAA
ACGTTACAATCGTTTAGATAAACGTAATAAATTACCACAATGGATCTTACAATTTTGTCA
ACCTCAACATTTAAATCTTTCAACTGATATGGCAATTTCACTTTCAAAAACTTTTTTAAG
AGAAATGGGTCAACCATTTTCAAGAGAAGAACAATTAGGTAAATCATTATGGAGTTTAGA
ACATGTTGAAAAACAATCAACAAGTAAACCACCACAACAACAAAATTCAGCTATAAATTC
AACTATTACAACTTCTACTACTACTACAACCACGACTTCTACAATTTCTNAAACACATTT
AACATAAAAAAAATAAAAATAAAAAAAACAA
sequence update 2002.10.25
Translated Amino Acid sequence 
FSTNFPTINRTLKINKKLKMKFYIEDLLVYFPYSYIYPEQYSYMVALKRSLDNGGPCILE
MPSGTGKTVSLLSLISSYQVKNPSIKLIYCSRTVPEIEQATEEARRVLQYRNSEMGEESP
KTLCMSMSSRRNLCIQPRVSEERDGKVVDALCRELTSSWNRESPTSEKCKFFENFESNGK
EILL---

---TSDXAESALALQNYKKACDSGRGAVLLSVARGKVSEGIDFDNQYGRCVILYGIPYIN
TESKVLRARLEFLRDRYQIRENEFLTFDAMRTASQCVGRVIRGKSDYGIMIFADKRYNRL
DKRNKLPQWILQFCQPQHLNLSTDMAISLSKTFLREMGQPFSREEQLGKSLWSLEHVEKQ
STSKPPQQQNSAINSTITTSTTTTTTTSTISXTHLT*kk*k*kkq
Translated Amino Acid sequence (All Frames) 
Frame A:
ifqlisqqliel*k*irn*k*nfilkif*yifhihifiqnsiviw*h*rdh*imvdhvy*
rcqvvlvrryhcyr*fhhiklkihqln*fivqeqcqrlnklqkrlegyynigiqkwgksh
lkryvcqcrhvvtfvfnqgyrkrgmvkwsmpsves*hphgigshprvknvnfsrilnlte
rksy---

---nfrscrisigiaklqesmrqw*rcxttfsgkr*gv*gyrfr*svwqmrhslwhtlhq
yre*gitctfgip*rslsn*re*ipnf*cnencfsmcw*shsw*irlwyhdlc**tlqsf
r*t**ittmdltilststfksfn*ygnftfknffkrngstifkrrtir*iimefrtc*kt
ink*tttttkfsykfnyynfyyyynhdfynfxntfnikkikikkt

Frame B:
ffn*fpnn**nsenk*eikneily*rsfsifsifiylsrtv*lygsikeiir*wwtmyir
dakwyw*dgiiaivnfiiss*ksin*inllfknsard*tsyrrg*kgiti*efrnggrvt
*nvmyvnvvts*plystkgigregw*sgrcpl*rvdilme*gvthe*km*ifref*i*rk
gnpt---

---TSDXAESALALQNYKKACDSGRGAVLLSVARGKVSEGIDFDNQYGRCVILYGIPYIN
TESKVLRARLEFLRDRYQIRENEFLTFDAMRTASQCVGRVIRGKSDYGIMIFADKRYNRL
DKRNKLPQWILQFCQPQHLNLSTDMAISLSKTFLREMGQPFSREEQLGKSLWSLEHVEKQ
STSKPPQQQNSAINSTITTSTTTTTTTSTISXTHLT*kk*k*kkq

Frame C:
FSTNFPTINRTLKINKKLKMKFYIEDLLVYFPYSYIYPEQYSYMVALKRSLDNGGPCILE
MPSGTGKTVSLLSLISSYQVKNPSIKLIYCSRTVPEIEQATEEARRVLQYRNSEMGEESP
KTLCMSMSSRRNLCIQPRVSEERDGKVVDALCRELTSSWNRESPTSEKCKFFENFESNGK
EILL---

---lqixpnqhwhckttrkhatvvevxyyfqwqevrclrvsisiismadasfsmayltsi
prvryyvhvwnsleiviklermns*llmq*elllnvlvesfvvnpimvs*sllinvtiv*
invinyhngsynfvnlni*ifqliwqfhfqklf*ekwvnhfqeknn*vnhygv*nmlknn
qqvnhhnnkiql*iqllqlllllqprllqflkhi*hkknknkkn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHD165 (VHD165Q) /CSM/VH/VHD1-C/VHD165Q.Seq.d/                       2311   0.0
VHJ593 (VHJ593Q) /CSM/VH/VHJ5-D/VHJ593Q.Seq.d/                       1253   0.0
AHK619 (AHK619Q) /CSM/AH/AHK6-A/AHK619Q.Seq.d/                       1237   0.0
VHC393 (VHC393Q) /CSM/VH/VHC3-D/VHC393Q.Seq.d/                       1235   0.0
VHB116 (VHB116Q) /CSM/VH/VHB1-A/VHB116Q.Seq.d/                       1235   0.0
AHF812 (AHF812Q) /CSM/AH/AHF8-A/AHF812Q.Seq.d/                       1233   0.0
CHI534 (CHI534Q) /CSM/CH/CHI5-B/CHI534Q.Seq.d/                       1229   0.0
AFD323 (AFD323Q) /CSM/AF/AFD3-A/AFD323Q.Seq.d/                       1227   0.0
AFM169 (AFM169Q) /CSM/AF/AFM1-C/AFM169Q.Seq.d/                       1225   0.0
VHA271 (VHA271Q) /CSM/VH/VHA2-C/VHA271Q.Seq.d/                       1221   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U77066|U77066.1 Dictyostelium discoideum DNA helicase homolog (repD) gene, complete cds.  1253   0.0    1
CR382139|CR382139.1 Debaryomyces hansenii chromosome G of strain CBS767 of Debaryomyces hansenii.    66   3e-06  1
CB282077|CB282077.1 BT0043 Blomia tropicalis cDNA library Blomia tropicalis cDNA, mRNA sequence.    48   4e-05  2
CF638930|CF638930.1 D08_G08 Filamentous Forced Diploid Ustilago maydis cDNA 3', mRNA sequence.    58   6e-04  1
DX751003|DX751003.1 2209995 VV03 Ustilago maydis genomic clone 862299, genomic survey sequence.    58   6e-04  1
DX663648|DX663648.1 2273936 VV02 Ustilago maydis genomic clone 932366, genomic survey sequence.    58   6e-04  1
DX660012|DX660012.1 2007873 VV02 Ustilago maydis genomic clone 818001, genomic survey sequence.    58   6e-04  1
DX654619|DX654619.1 2293968 VV02 Ustilago maydis genomic clone 832521, genomic survey sequence.    58   6e-04  1
DX641930|DX641930.1 1930348 VV02 Ustilago maydis genomic clone 790799, genomic survey sequence.    58   6e-04  1
DX634786|DX634786.1 2018620 VV02 Ustilago maydis genomic clone 804144, genomic survey sequence.    58   6e-04  1
dna update 2007. 5. 9
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55G81) RecName: Full=TFIIH basal transcription factor complex ...   382   e-104
AY092780_1(AY092780|pid:none) Homo sapiens excision repair cross...   242   2e-62
(O08811) RecName: Full=TFIIH basal transcription factor complex ...   241   4e-62
AK082761_1(AK082761|pid:none) Mus musculus ES cells cDNA, RIKEN ...   241   5e-62
AK004652_1(AK004652|pid:none) Mus musculus adult male lung cDNA,...   241   5e-62
AK130849_1(AK130849|pid:none) Homo sapiens cDNA FLJ27339 fis, cl...   240   7e-62
AB170535_1(AB170535|pid:none) Macaca fascicularis brain cDNA clo...   240   7e-62
BC110522_1(BC110522|pid:none) Homo sapiens excision repair cross...   240   7e-62
BC110523_1(BC110523|pid:none) Homo sapiens excision repair cross...   240   7e-62
AY382619_1(AY382619|pid:none) Drosophila melanogaster strain Ral...   238   2e-61
protein update 2009. 6.28
PSORT 

 psg: 0.53  gvh: 0.32  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.34  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 24.0 %: mitochondrial
	 20.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for VHD165 is nuc
5' end seq. ID VHD165F
5' end seq. 
>VHD165F.Seq
ATTTTTCAACTAATTTCCCAACAATTAATAGAACTCTGAAAATAAATAAGAAATTAAAAA
TGAAATTTTATATTGAAGATCTTTTAGTATATTTTCCATATTCATATATTTATCCAGAAC
AGTATAGTTATATGGTAGCATTAAAGAGATCATTAGATAATGGTGGACCATGTATATTAG
AGATGCCAAGTGGTACTGGTAAGACGGTATCATTGCTATCGTTAATTTCATCATATCAAG
TTAAAAATCCATCAATTAAATTAATTTATTGTTCAAGAACAGTGCCAGAGATTGAACAAG
CTACAGAAGAGGCTAGAAGGGTATTACAATATAGGAATTCAGAAATGGGGGAAGAGTCAC
CTAAAACGTTATGTATGTCAATGTCGTCACGTCGTAACCTTTGTATTCAACCAAGGGTAT
CGGAAGAGAGGGATGGTAAAGTGGTCGATGCCCTCTGTAGAGAGTTGACATCCTCATGGA
ATAGGGAGTCACCCACGAGTGAAAAATGTAAATTTTTCGAGAATTTTGAATCTAACGGAA
AGGAAATCCTACTANNNNNNNNNN
Length of 5' end seq. 564
3' end seq. ID VHD165Z
3' end seq. 
>VHD165Z.Seq
NNNNNNNNNNAACTTCAGATCNTGCCGAATCAGCATTGGCATTGCAAAACTACAAGAAAG
CATGCGACAGTGGTAGAGGTGCNGTACTACTTTCAGTGGCAAGAGGTAAGGTGTCTGAGG
GTATCGATTTCGATAATCAGTATGGCAGATGCGTCATTCTCTATGGCATACCTTACATCA
ATACCGAGAGTAAGGTATTACGTGCACGTTTGGAATTCCTTAGAGATCGTTATCAAATTA
GAGAGAATGAATTCCTAACTTTTGATGCAATGAGAACTGCTTCTCAATGTGTTGGTAGAG
TCATTCGTGGTAAATCCGATTATGGTATCATGATCTTTGCTGATAAACGTTACAATCGTT
TAGATAAACGTAATAAATTACCACAATGGATCTTACAATTTTGTCAACCTCAACATTTAA
ATCTTTCAACTGATATGGCAATTTCACTTTCAAAAACTTTTTTAAGAGAAATGGGTCAAC
CATTTTCAAGAGAAGAACAATTAGGTAAATCATTATGGAGTTTAGAACATGTTGAAAAAC
AATCAACAAGTAAACCACCACAACAACAAAATTCAGCTATAAATTCAACTATTACAACTT
CTACTACTACTACAACCACGACTTCTACAATTTCTNAAACACATTTAACATAAAAAAAAT
AAAAATAAAAAAAACAA
Length of 3' end seq. 677
Connected seq. ID VHD165P
Connected seq. 
>VHD165P.Seq
ATTTTTCAACTAATTTCCCAACAATTAATAGAACTCTGAAAATAAATAAGAAATTAAAAA
TGAAATTTTATATTGAAGATCTTTTAGTATATTTTCCATATTCATATATTTATCCAGAAC
AGTATAGTTATATGGTAGCATTAAAGAGATCATTAGATAATGGTGGACCATGTATATTAG
AGATGCCAAGTGGTACTGGTAAGACGGTATCATTGCTATCGTTAATTTCATCATATCAAG
TTAAAAATCCATCAATTAAATTAATTTATTGTTCAAGAACAGTGCCAGAGATTGAACAAG
CTACAGAAGAGGCTAGAAGGGTATTACAATATAGGAATTCAGAAATGGGGGAAGAGTCAC
CTAAAACGTTATGTATGTCAATGTCGTCACGTCGTAACCTTTGTATTCAACCAAGGGTAT
CGGAAGAGAGGGATGGTAAAGTGGTCGATGCCCTCTGTAGAGAGTTGACATCCTCATGGA
ATAGGGAGTCACCCACGAGTGAAAAATGTAAATTTTTCGAGAATTTTGAATCTAACGGAA
AGGAAATCCTACTA----------AACTTCAGATCNTGCCGAATCAGCATTGGCATTGCA
AAACTACAAGAAAGCATGCGACAGTGGTAGAGGTGCNGTACTACTTTCAGTGGCAAGAGG
TAAGGTGTCTGAGGGTATCGATTTCGATAATCAGTATGGCAGATGCGTCATTCTCTATGG
CATACCTTACATCAATACCGAGAGTAAGGTATTACGTGCACGTTTGGAATTCCTTAGAGA
TCGTTATCAAATTAGAGAGAATGAATTCCTAACTTTTGATGCAATGAGAACTGCTTCTCA
ATGTGTTGGTAGAGTCATTCGTGGTAAATCCGATTATGGTATCATGATCTTTGCTGATAA
ACGTTACAATCGTTTAGATAAACGTAATAAATTACCACAATGGATCTTACAATTTTGTCA
ACCTCAACATTTAAATCTTTCAACTGATATGGCAATTTCACTTTCAAAAACTTTTTTAAG
AGAAATGGGTCAACCATTTTCAAGAGAAGAACAATTAGGTAAATCATTATGGAGTTTAGA
ACATGTTGAAAAACAATCAACAAGTAAACCACCACAACAACAAAATTCAGCTATAAATTC
AACTATTACAACTTCTACTACTACTACAACCACGACTTCTACAATTTCTNAAACACATTT
AACATAAAAAAAATAAAAATAAAAAAAACAA
Length of connected seq. 1221
Full length Seq ID -
Full length Seq. -
Length of full length seq. -