VHD155
Library VH
(Link to library)
Clone ID VHD155
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID VHD155P
(Link to Original site)
Representative DNA sequence
>VHD155 (VHD155Q) /CSM/VH/VHD1-C/VHD155Q.Seq.d/
ATTTTCATTTATATAATTATTTCATTTTTATATAAATAAAAAAATGTCAACACAACAAGC
ATTAGCTCAGGCTAATGAACATGCTTTAAGCCAAGCAAATGATTTAATTAAAGTTGGATC
AAAATTAAGAGCATTAAGTGTCTTAAGAGATTTATTAAGTGATCGTAGTCAATGGCATTC
AAGTTTAGAACAAATTATGTCATTATACGTTTCATTATGTGCTGAACAATTAGATTATCA
ATCATTAAGAGATGGTATTCATCATTTCAAAGTTTCAATCATGTCACAAAAGGAATTCTC
AATTGTACCATTAGAAAATATCTTTAAAGAAATCATTACACCAATTGAACAAAAAGTAGA
CGAATTAAAAGAGAAAATTGAAAAAGAAAATCAAGAGAATCCATTAGTTGAACAAAATGA
AATCTCACTCATTGATCCACAACAAACTCTCTTATTCTCTTATATGAAATATTTATTTGA
AGCTTATAAAGCAATGATTGAAGTACTCACTCGTCAAAATAXXXXXXXXXXGCTCCCCCA
AAAAAAAANGGAGGTGGTANTGGNGGTTTCGGTGGTAAANGTGATNATGCCCCCCCAAAA
CGTNANGAAGGTGGTNATTGTTNGGGTAAANGTNAAAATGNTNCCCCNCCAAAANGTNAN
GAANGTGGTNATTGTTGGGGTAAANGTGATTATGNTCCCCCAAAAAAAAACGGTGGTGGT
GGTANTGGTTTTGGTANAAATCAAGGAGNCCAAGGTGATNAAAACGANAGNTGGANATNC
GATNACAAAAAANAANAAAACNAAAAANATNNTNATGGTTGGCA
sequence update 2002.10.25
Translated Amino Acid sequence
fsfi*LFHFYINKKMSTQQALAQANEHALSQANDLIKVGSKLRALSVLRDLLSDRSQWHS
SLEQIMSLYVSLCAEQLDYQSLRDGIHHFKVSIMSQKEFSIVPLENIFKEIITPIEQKVD
ELKEKIEKENQENPLVEQNEISLIDPQQTLLFSYMKYLFEAYKAMIEVLTRQN---

---APPKKXGGGXGGFGGKXDXAPPKRXEGGXCXGKXXNXXPPKXXEXGXCWGKXDYXPP
KKNGGGGXGFGXNQGXQGDXNXXWXXDXKKXXNXKXXXGW


Translated Amino Acid sequence (All Frames)
Frame A:
ifiyiiisflyk*knvnttsissg**tcfkpsk*fn*swikiksikclkrfik*s*smaf
kfrtnyviirfimc*tirlsiikrwyssfqsfnhvtkgilnctirkyl*rnhytn*tksr
rikren*krksresis*tk*nlth*sttnslillyeifi*sl*snd*sthssk---

---APPKKXGGGXGGFGGKXDXAPPKRXEGGXCXGKXXNXXPPKXXEXGXCWGKXDYXPP
KKNGGGGXGFGXNQGXQGDXNXXWXXDXKKXXNXKXXXGW

Frame B:
fsfi*LFHFYINKKMSTQQALAQANEHALSQANDLIKVGSKLRALSVLRDLLSDRSQWHS
SLEQIMSLYVSLCAEQLDYQSLRDGIHHFKVSIMSQKEFSIVPLENIFKEIITPIEQKVD
ELKEKIEKENQENPLVEQNEISLIDPQQTLLFSYMKYLFEAYKAMIEVLTRQN---

---lpqkkxevvxxvsvvxvxmppqnvxkvvivxvxvkmxpxqxvxxvvivgvxvimxpq
kktvvvvxvlvxikexkvxktxxgxxxtkxxktkxxxmvg

Frame C:
fhlynyfifi*ikkcqhnkh*lrlmnml*akqmi*lkldqn*eh*vs*eiy*vivvngiq
v*nklchytfhyvlnn*iinh*emvfiiskfqschkrnsqlyh*kislkkslhqlnkk*t
n*krklkkkikrih*lnkmkshslihnklsysli*niylklikq*lkyslvki---

---spkkkxrwxwxfrw*x*xcppktxxrwxlxg*xxkxxpxkxxxxwxllg*x*lxspk
kkrwwwxwfwxksrxpr*xkrxxxxrxqkxxkxkxxxwla

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHQ486 (VHQ486Q) /CSM/VH/VHQ4-D/VHQ486Q.Seq.d/ 652 0.0
VHQ255 (VHQ255Q) /CSM/VH/VHQ2-C/VHQ255Q.Seq.d/ 652 0.0
VHP666 (VHP666Q) /CSM/VH/VHP6-C/VHP666Q.Seq.d/ 652 0.0
VHO837 (VHO837Q) /CSM/VH/VHO8-B/VHO837Q.Seq.d/ 652 0.0
VHO756 (VHO756Q) /CSM/VH/VHO7-C/VHO756Q.Seq.d/ 652 0.0
VHM249 (VHM249Q) /CSM/VH/VHM2-C/VHM249Q.Seq.d/ 652 0.0
VHL330 (VHL330Q) /CSM/VH/VHL3-B/VHL330Q.Seq.d/ 652 0.0
VHK759 (VHK759Q) /CSM/VH/VHK7-C/VHK759Q.Seq.d/ 652 0.0
VHK547 (VHK547Q) /CSM/VH/VHK5-B/VHK547Q.Seq.d/ 652 0.0
VHK332 (VHK332Q) /CSM/VH/VHK3-B/VHK332Q.Seq.d/ 652 0.0

own update 2002.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC115604|AC115604.2 Dictyostelium discoideum chromosome 2 map 4354771-4414991 strain AX4, complete sequence. 446 0.0 6
CW376326|CW376326.1 fsbb001f054c14f0 Sorghum methylation filtered library (LibID: 104) Sorghum bicolor genomic clone fsbb001f054c14, genomic survey sequence. 52 0.026 1
CW143479|CW143479.1 104_535_11137435_148_34958_076 Sorghum methylation filtered library (LibID: 104) Sorghum bicolor genomic clone 11137435, genomic survey sequence. 52 0.026 1
U07703|U07703.1 Chironomus thummi 7B globin gene cluster. 38 0.027 4
AC198143|AC198143.2 Pongo pygmaeus abelii chromosome UNKNOWN clone CH276-273K19, WORKING DRAFT SEQUENCE, 2 unordered pieces. 50 0.10 1
AL426340|AL426340.1 clone BA0AB012C07 of library BA0AB from strain CLIB 210 of Kluyveromyces lactis. 50 0.10 1
CZ940996|CZ940996.1 322933 Tomato EcoRI BAC Library Solanum lycopersicum genomic clone SL_EcoRI0017L22 5, genomic survey sequence. 48 0.40 1
AE006268|AE006268.1 Lactococcus lactis subsp. lactis IL1403 section 30 of 218 of the complete genome. 36 0.96 2
CU041262|CU041262.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-177J10. 46 1.6 1
AL158846|AL158846.4 Human DNA sequence *** SEQUENCING CANCELLED *** from clone RP4-674D19. 46 1.6 1
dna update 2007. 5. 9
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

FN357292_143(FN357292|pid:none) Schistosoma mansoni genome seque... 52 2e-05
CP001328_373(CP001328|pid:none) Micromonas sp. RCC299 chromosome... 50 7e-05
FN317268_1(FN317268|pid:none) Schistosoma japonicum isolate Anhu... 49 2e-04
(Q9XHR2) RecName: Full=Eukaryotic translation initiation factor ... 48 3e-04
(O74760) RecName: Full=Eukaryotic translation initiation factor ... 47 7e-04
EF677739_1(EF677739|pid:none) Picea sitchensis clone WS02773_O19... 46 0.001
BC064926_1(BC064926|pid:none) Homo sapiens eukaryotic translatio... 46 0.001
BC107776_1(BC107776|pid:none) Homo sapiens eukaryotic translatio... 46 0.001
AM458293_7(AM458293|pid:none) Vitis vinifera contig VV78X261766.... 46 0.001
BC033769_1(BC033769|pid:none) Homo sapiens eukaryotic translatio... 46 0.001
protein update 2009. 6.28
PSORT

psg: 0.79 gvh: 0.45 alm: 0.45 top: 0.53 tms: 0.00 mit: 0.32 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: nuclear
36.0 %: cytoplasmic
12.0 %: mitochondrial
8.0 %: cytoskeletal
4.0 %: endoplasmic reticulum

>> prediction for VHD155 is nuc

5' end seq. ID VHD155F
5' end seq.
>VHD155F.Seq
ATTTTCATTTATATAATTATTTCATTTTTATATAAATAAAAAAATGTCAACACAACAAGC
ATTAGCTCAGGCTAATGAACATGCTTTAAGCCAAGCAAATGATTTAATTAAAGTTGGATC
AAAATTAAGAGCATTAAGTGTCTTAAGAGATTTATTAAGTGATCGTAGTCAATGGCATTC
AAGTTTAGAACAAATTATGTCATTATACGTTTCATTATGTGCTGAACAATTAGATTATCA
ATCATTAAGAGATGGTATTCATCATTTCAAAGTTTCAATCATGTCACAAAAGGAATTCTC
AATTGTACCATTAGAAAATATCTTTAAAGAAATCATTACACCAATTGAACAAAAAGTAGA
CGAATTAAAAGAGAAAATTGAAAAAGAAAATCAAGAGAATCCATTAGTTGAACAAAATGA
AATCTCACTCATTGATCCACAACAAACTCTCTTATTCTCTTATATGAAATATTTATTTGA
AGCTTATAAAGCAATGATTGAAGTACTCACTCGTCAAAATANNNNNNNNNN
Length of 5' end seq. 531
3' end seq. ID VHD155Z
3' end seq.
>VHD155Z.Seq
NNNNNNNNNNGCTCCCCCAAAAAAAAANGGAGGTGGTANTGGNGGTTTCGGTGGTAAANG
TGATNATGCCCCCCCAAAACGTNANGAAGGTGGTNATTGTTNGGGTAAANGTNAAAATGN
TNCCCCNCCAAAANGTNANGAANGTGGTNATTGTTGGGGTAAANGTGATTATGNTCCCCC
AAAAAAAAACGGTGGTGGTGGTANTGGTTTTGGTANAAATCAAGGAGNCCAAGGTGATNA
AAACGANAGNTGGANATNCGATNACAAAAAANAANAAAACNAAAAANATNNTNATGGTTG
GCA
Length of 3' end seq. 303
Connected seq. ID VHD155P
Connected seq.
>VHD155P.Seq
ATTTTCATTTATATAATTATTTCATTTTTATATAAATAAAAAAATGTCAACACAACAAGC
ATTAGCTCAGGCTAATGAACATGCTTTAAGCCAAGCAAATGATTTAATTAAAGTTGGATC
AAAATTAAGAGCATTAAGTGTCTTAAGAGATTTATTAAGTGATCGTAGTCAATGGCATTC
AAGTTTAGAACAAATTATGTCATTATACGTTTCATTATGTGCTGAACAATTAGATTATCA
ATCATTAAGAGATGGTATTCATCATTTCAAAGTTTCAATCATGTCACAAAAGGAATTCTC
AATTGTACCATTAGAAAATATCTTTAAAGAAATCATTACACCAATTGAACAAAAAGTAGA
CGAATTAAAAGAGAAAATTGAAAAAGAAAATCAAGAGAATCCATTAGTTGAACAAAATGA
AATCTCACTCATTGATCCACAACAAACTCTCTTATTCTCTTATATGAAATATTTATTTGA
AGCTTATAAAGCAATGATTGAAGTACTCACTCGTCAAAATA----------GCTCCCCCA
AAAAAAAANGGAGGTGGTANTGGNGGTTTCGGTGGTAAANGTGATNATGCCCCCCCAAAA
CGTNANGAAGGTGGTNATTGTTNGGGTAAANGTNAAAATGNTNCCCCNCCAAAANGTNAN
GAANGTGGTNATTGTTGGGGTAAANGTGATTATGNTCCCCCAAAAAAAAACGGTGGTGGT
GGTANTGGTTTTGGTANAAATCAAGGAGNCCAAGGTGATNAAAACGANAGNTGGANATNC
GATNACAAAAAANAANAAAACNAAAAANATNNTNATGGTTGGCA
Length of connected seq. 814
Full length Seq ID -
Full length Seq. -
Length of full length seq. -