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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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AFN607
Library AF
(Link to library)
Clone ID AFN607
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13922-1
Original site URL
Representative seq. ID AFN607Z
(Link to Original site)
Representative DNA sequence 
>AFN607 (AFN607Q) /CSM/AF/AFN6-A/AFN607Q.Seq.d/
XXXXXXXXXXCNCCAGTCTGGTAGTACCACTCCGGTTGCACCAGTGACTCCAACNNANCA
ATCTGTACCACAATCTCCATTCTCAACTGGTGCTGCCGTCTCTGTCAATCAAAGTCATAG
CAATCTCCCAANNGNNACNACCCAACAATTCCTTGATCGTATCGTTCTCTCTGCTAAATC
CGTTAAACAAATCATTCAAAAGAAAACCTCTAATCGTGATACTGTCATCTCTTATTCTCA
TGNATTTAGTAAAGGNAT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
---QSGSTTPVAPVTPTXQSVPQSPFSTGAAVSVNQSHSNLPXXTTQQFLDRIVLSAKSV
KQIIQKKTSNRDTVISYSHXFSKG
Translated Amino Acid sequence (All Frames) 
Frame A:
---xslvvplrlhq*lqxxnlyhnlhsqlvlpslsikviaisqxxxpnnslivsfsllnp
lnksfkrkplivilsslilmxlvkx


Frame B:
---pvw*yhsgctsdsnxxicttisilnwccrlcqsks*qspxxxxptip*syrslc*ir
*tnhskenl*s*ychllfsxi**rx


Frame C:
---QSGSTTPVAPVTPTXQSVPQSPFSTGAAVSVNQSHSNLPXXTTQQFLDRIVLSAKSV
KQIIQKKTSNRDTVISYSHXFSKG
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFN607 (AFN607Q) /CSM/AF/AFN6-A/AFN607Q.Seq.d/                        428   e-119
VFM511 (VFM511Q) /CSM/VF/VFM5-A/VFM511Q.Seq.d/                        387   e-107
VFL163 (VFL163Q) /CSM/VF/VFL1-C/VFL163Q.Seq.d/                        387   e-107
SSH396 (SSH396Q) /CSM/SS/SSH3-D/SSH396Q.Seq.d/                        387   e-107
SSC538 (SSC538Q) /CSM/SS/SSC5-B/SSC538Q.Seq.d/                        387   e-107
SSC534 (SSC534Q) /CSM/SS/SSC5-B/SSC534Q.Seq.d/                        387   e-107
SLI758 (SLI758Q) /CSM/SL/SLI7-C/SLI758Q.Seq.d/                        387   e-107
SLC832 (SLC832Q) /CSM/SL/SLC8-B/SLC832Q.Seq.d/                        387   e-107
SLA529 (SLA529Q) /CSM/SL/SLA5-B/SLA529Q.Seq.d/                        387   e-107
SFG704 (SFG704Q) /CSM/SF/SFG7-A/SFG704Q.Seq.d/                        387   e-107
own update 2001.11.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF222688|AF222688.1 Dictyostelium discoideum dynacortin (dct) mRNA, complete cds.   363  e-101  2
BX005004|BX005004.7 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    44  0.82  1
AC019295|AC019295.3 Homo sapiens clone RP11-24O11, WORKING DRAFT SEQUENCE, 5 unordered pieces.    44  0.82  1
BX119902|BX119902.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-137I24.    44  0.82  1
AC083781|AC083781.2 Homo sapiens chromosome 1 clone RP11-225N18 map 1, WORKING DRAFT SEQUENCE, 11 unordered pieces.    44  0.82  1
AC131110|AC131110.1 Mus musculus chromosome UNK clone RP23-387J23, WORKING DRAFT SEQUENCE, 9 unordered pieces.    42  3.2  1
BG269764|BG269764.1 L48-3862T3 Ice plant Lambda Uni-Zap XR expression library, 48 hours NaCl treatment Mesembryanthemum crystallinum cDNA clone L48-3862 5', mRNA sequence.    42  3.2  1
CA839335|CA839335.1 MCT026D04_171765 Ice plant Lambda Uni-Zap XR expression library, 5 days 0.5 M NaCl treatment, Crassulacean acid metabolism, phase IV (5:30 PM). Mesembryanthemum crystallinum cDNA clone MCT026D04 5, mRNA sequence.    42  3.2  1
AC108842|AC108842.3 Mus musculus clone RP23-368O2, WORKING DRAFT SEQUENCE, 29 unordered pieces.    42  3.2  1
CA838068|CA838068.1 MCT012E04_166067 Ice plant Lambda Uni-Zap XR expression library, 5 days 0.5 M NaCl treatment, Crassulacean acid metabolism, phase IV (5:30 PM). Mesembryanthemum crystallinum cDNA clone MCT012E04 5, mRNA sequence.    42  3.2  1
dna update 2003. 9.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF222688_1(AF222688|pid:none) Dictyostelium discoideum dynacorti...    86   3e-16
protein update 2008.11.26
PSORT 

 psg: 0.89  gvh: 0.44  alm: 0.51  top: 0.50  tms: 0.00  mit: 0.39  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: mitochondrial
	 32.0 %: nuclear
	 24.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for AFN607 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFN607Z
3' end seq. 
>AFN607Z.Seq
----------CNCCAGTCTGGTAGTACCACTCCGGTTGCACCAGTGACTCCAACNNANCA
ATCTGTACCACAATCTCCATTCTCAACTGGTGCTGCCGTCTCTGTCAATCAAAGTCATAG
CAATCTCCCAANNGNNACNACCCAACAATTCCTTGATCGTATCGTTCTCTCTGCTAAATC
CGTTAAACAAATCATTCAAAAGAAAACCTCTAATCGTGATACTGTCATCTCTTATTCTCA
TGNATTTAGTAAAGGNAT
Length of 3' end seq. 248
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -