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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHD101
Library VH
(Link to library)
Clone ID VHD101
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11159-1|Contig-U12695-1
Original site URL
Representative seq. ID VHD101P
(Link to Original site)
Representative DNA sequence 
>VHD101 (VHD101Q) /CSM/VH/VHD1-A/VHD101Q.Seq.d/
ATTCCAAATTTAGAGAGATTGGGTATGCAATACAAAGTGTTAACTGCTCAAGAAATTATG
GAAGAGTATCCATTTAGAAACATTCCATCCAATCACCAAGGTGTTTTTGCTCCAGACAAT
GGTGTTATCAATTTACCATTGGTATTACGTTCTCTTTACAAGTTATGTTTACAATATGGT
TGTAAAATGGTAAGCCATGCAGAAGTTAAACTTATTAAAAATCTTAGCACAACAATGGTT
GAAATTGAAGTTGAACACACCGATGTTGACCAAAAAAATAAACAATCCTTCAAAGTTAAA
AGTAAAAAAGCTGCCATTACCAGTAATAGTTTCTGTAATCATATTATTAAACCATCATTT
GGATGGGAATTAGATATGACCATTTGGGAAATGACTTCAAGTTATTTCGTTGCAAAACCA
GGTCCAAATGCAACTGTTTTCAAAAGTATGTGGTTCAATTTCCAAAATGATACTGATAAT
GACCCAACAAAATCAAATTTATACTACGGTTTCCCAGCTGTACCATGGATGACTGATAAC
CATTGTAGAATTGCATTGGATGCAGCATTACGTCAAATTAAAGATCCAAACGATCGTCAT
GATGGTGTTGAAACTCATGATGTTAATCGTACTCGTGXXXXXXXXXXTGAAGTTCNCAAT
GTTCCAGTCGNTACCCTCCAACAATTATTTGTTGATTACAAATGNTGGGATTGGNATAAT
GATGATTATTCATCAGGNGCATTTGCTNTTTACAGTCCATCNCAATTNTTTCAATTGTTC
CCATCNCTTANTAAACCNTCNCCAGATGGTANATTCCNTTTAGNTGGNGAANCAACATNT
GTTCATCANGGNTGGGTCATTGGTTNTNTTAACTNTGCCTATCGNTCAGTCGATCACATT
TTTCAAGTTGAAGGTNTTGATGAGTTACGNGCCAAATTACGTNTCAATTGGGGTTTCATC
GATGAAGTTGAANATCCNCAANATGATCAACAATATGTTGACCCNCATCNCAATTTAAGN
GGTCCAAATGCTAAAAAATTCAGATCAAATGTATCCCAAGNTGCCNTTCAACCAAGATTC
AAAGCTCCAANAAACTTTAAACCAANAAANACTGCT
sequence update 2002.10.25
Translated Amino Acid sequence 
IPNLERLGMQYKVLTAQEIMEEYPFRNIPSNHQGVFAPDNGVINLPLVLRSLYKLCLQYG
CKMVSHAEVKLIKNLSTTMVEIEVEHTDVDQKNKQSFKVKSKKAAITSNSFCNHIIKPSF
GWELDMTIWEMTSSYFVAKPGPNATVFKSMWFNFQNDTDNDPTKSNLYYGFPAVPWMTDN
HCRIALDAALRQIKDPNDRHDGVETHDVNRTR---

---EVXNVPVXTLQQLFVDYKXWDWXNDDYSSGAFAXYSPSQXFQLFPSLXKPSPDGXFX
LXGEXTXVHXGWVIGXXNXAYRSVDHIFQVEGXDELRAKLRXNWGFIDEVEXPQXDQQYV
DPHXNLXGPNAKKFRSNVSQXAXQPRFKAPXNFKPXXTA
Translated Amino Acid sequence (All Frames) 
Frame A:
IPNLERLGMQYKVLTAQEIMEEYPFRNIPSNHQGVFAPDNGVINLPLVLRSLYKLCLQYG
CKMVSHAEVKLIKNLSTTMVEIEVEHTDVDQKNKQSFKVKSKKAAITSNSFCNHIIKPSF
GWELDMTIWEMTSSYFVAKPGPNATVFKSMWFNFQNDTDNDPTKSNLYYGFPAVPWMTDN
HCRIALDAALRQIKDPNDRHDGVETHDVNRTR---

---*ssqcssrypptiic*lqmxglx***lfirxicxlqsixixsivpixx*txxrwxip
fxwxxnxcssxxghwxx*lclsxsrshfss*rx**vtxqitxqlgfhr*s*xsxx*stic
*pxsqfkxskc*kiqikcipxcxstkiqssxkl*txkxc

Frame B:
fqi*rdwvcntkc*llkklwksihletfhpitkvfllqtmvlsiyhwyyvlftsyvynmv
vkw*amqklnllkilaqqwlklklntpmltkkinnpsklkvkklplpvivsviillnhhl
dgn*i*pfgk*lqvislqnqvqmqlfskvcgsiskmilimtqqnqiyttvsqlyhg*lit
ivelhwmqhyvklkiqtivmmvlklmmlivlv---

---EVXNVPVXTLQQLFVDYKXWDWXNDDYSSGAFAXYSPSQXFQLFPSLXKPSPDGXFX
LXGEXTXVHXGWVIGXXNXAYRSVDHIFQVEGXDELRAKLRXNWGFIDEVEXPQXDQQYV
DPHXNLXGPNAKKFRSNVSQXAXQPRFKAPXNFKPXXTA

Frame C:
skfreigyaiqsvncsrnygrvsi*khsiqsprcfcsrqwcyqftigitfslqvmftiwl
*ngkpcrs*ty*ks*hnng*n*s*thrc*pkk*tilqs*k*kschyq**fl*syy*tiiw
mgirydhlgndfklfrcktrskcncfqkyvvqfpk*y***pnkikfilrfpsctmdd**p
l*ncigcsitsn*rskrss*wc*ns*c*sys---

---kfxmfqsxpsnnyllitnxgigimmiihqxhllftvhxnxfncshxlxnxxqmvxsx
*xxxqhxfixxgslvxltxpixqsitffklkvlmsyxpnyvsigvssmklxixxminnml
txixi*xvqmlknsdqmypkxpfnqdsklqxtlnqxxl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHD101 (VHD101Q) /CSM/VH/VHD1-A/VHD101Q.Seq.d/                       1885   0.0
VHO852 (VHO852Q) /CSM/VH/VHO8-C/VHO852Q.Seq.d/                       1104   0.0
VHC673 (VHC673Q) /CSM/VH/VHC6-D/VHC673Q.Seq.d/                        698   0.0
VHG166 (VHG166Q) /CSM/VH/VHG1-C/VHG166Q.Seq.d/                        692   0.0
VHD682 (VHD682Q) /CSM/VH/VHD6-D/VHD682Q.Seq.d/                        680   0.0
VHO690 (VHO690Q) /CSM/VH/VHO6-D/VHO690Q.Seq.d/                        672   0.0
VHO140 (VHO140Q) /CSM/VH/VHO1-B/VHO140Q.Seq.d/                        672   0.0
VHM372 (VHM372Q) /CSM/VH/VHM3-C/VHM372Q.Seq.d/                        672   0.0
VHK746 (VHK746Q) /CSM/VH/VHK7-B/VHK746Q.Seq.d/                        672   0.0
VHK414 (VHK414Q) /CSM/VH/VHK4-A/VHK414Q.Seq.d/                        672   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

EJ261209|EJ261209.1 1095349040450 Global-Ocean-Sampling_GS-27-01-01-1P8-2P0KB marine metagenome genomic clone 1061005495618 3', genomic survey sequence.    48   0.54   1
EJ150489|EJ150489.1 1092343756363 Global-Ocean-Sampling_GS-27-01-01-1P8-2P0KB marine metagenome genomic clone 1061001453166 5', genomic survey sequence.    48   0.54   1
DV421926|DV421926.1 NADYV94TR Aedes aegypti infected with Dengue virus Pool library Aedes aegypti cDNA clone NADYV94, mRNA sequence.    46   2.1    1
DV259636|DV259636.1 AEDCB58TO Aedes re-sequencing Aedes aegypti cDNA clone AEDCB58, mRNA sequence.    46   2.1    1
EC294756|EC294756.1 BRAINF091458B18 POSSUM_01-POSSUM-C-BRAIN-2KB Trichosurus vulpecula cDNA clone 1061025023612, mRNA sequence.    46   2.1    1
EB353264|EB353264.1 AXON26-F-036847-501 Non-Normalized CNS library Aplysia californica cDNA clone AXON26-F-036847 5', mRNA sequence.    46   2.1    1
EE310816|EE310816.1 AGENCOURT_86358747 NICHD_XGC_bone Xenopus laevis cDNA clone IMAGE:8739961 5', mRNA sequence.    46   2.1    1
CC875151|CC875151.1 NDL.99A9.T7 Notre Dame Liverpool Aedes aegypti genomic clone NotreDame Liverpool-99A9, genomic survey sequence.    46   2.1    1
AC022809|AC022809.6 Homo sapiens chromosome 18, clone RP11-699A5, complete sequence.    46   2.1    1
AC022795|AC022795.9 Homo sapiens chromosome 18, clone RP11-254G11, complete sequence.    46   2.1    1
dna update 2007. 5. 9
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU638744_413(CU638744|pid:none) Podospora anserina genomic DNA c...   171   4e-41
Y18574_4(Y18574|pid:none) Streptomyces tendae strain Tue901, nik...    59   3e-07
CU638744_414(CU638744|pid:none) Podospora anserina genomic DNA c...    54   1e-05
CP000097_252(CP000097|pid:none) Synechococcus sp. CC9902, comple...    52   3e-05
CP000552_411(CP000552|pid:none) Prochlorococcus marinus str. MIT...    49   2e-04
CT978603_2294(CT978603|pid:none) Synechococcus sp. RCC307 genomi...    48   5e-04
CP000825_406(CP000825|pid:none) Prochlorococcus marinus str. MIT...    47   0.001
AM286415_1545(AM286415|pid:none) Yersinia enterocolitica subsp. ...    46   0.002
CP000435_266(CP000435|pid:none) Synechococcus sp. CC9311, comple...    43   0.017
AL670008_3(AL670008|pid:none) Neurospora crassa DNA linkage grou...    42   0.051
protein update 2009. 6.28
PSORT 

 psg: 0.74  gvh: 0.40  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.02
 nuc: 0.03  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: cytoplasmic
	 28.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for VHD101 is cyt
5' end seq. ID VHD101F
5' end seq. 
>VHD101F.Seq
ATTCCAAATTTAGAGAGATTGGGTATGCAATACAAAGTGTTAACTGCTCAAGAAATTATG
GAAGAGTATCCATTTAGAAACATTCCATCCAATCACCAAGGTGTTTTTGCTCCAGACAAT
GGTGTTATCAATTTACCATTGGTATTACGTTCTCTTTACAAGTTATGTTTACAATATGGT
TGTAAAATGGTAAGCCATGCAGAAGTTAAACTTATTAAAAATCTTAGCACAACAATGGTT
GAAATTGAAGTTGAACACACCGATGTTGACCAAAAAAATAAACAATCCTTCAAAGTTAAA
AGTAAAAAAGCTGCCATTACCAGTAATAGTTTCTGTAATCATATTATTAAACCATCATTT
GGATGGGAATTAGATATGACCATTTGGGAAATGACTTCAAGTTATTTCGTTGCAAAACCA
GGTCCAAATGCAACTGTTTTCAAAAGTATGTGGTTCAATTTCCAAAATGATACTGATAAT
GACCCAACAAAATCAAATTTATACTACGGTTTCCCAGCTGTACCATGGATGACTGATAAC
CATTGTAGAATTGCATTGGATGCAGCATTACGTCAAATTAAAGATCCAAACGATCGTCAT
GATGGTGTTGAAACTCATGATGTTAATCGTACTCGTGNNNNNNNNNN
Length of 5' end seq. 647
3' end seq. ID VHD101Z
3' end seq. 
>VHD101Z.Seq
NNNNNNNNNNTGAAGTTCNCAATGTTCCAGTCGNTACCCTCCAACAATTATTTGTTGATT
ACAAATGNTGGGATTGGNATAATGATGATTATTCATCAGGNGCATTTGCTNTTTACAGTC
CATCNCAATTNTTTCAATTGTTCCCATCNCTTANTAAACCNTCNCCAGATGGTANATTCC
NTTTAGNTGGNGAANCAACATNTGTTCATCANGGNTGGGTCATTGGTTNTNTTAACTNTG
CCTATCGNTCAGTCGATCACATTTTTCAAGTTGAAGGTNTTGATGAGTTACGNGCCAAAT
TACGTNTCAATTGGGGTTTCATCGATGAAGTTGAANATCCNCAANATGATCAACAATATG
TTGACCCNCATCNCAATTTAAGNGGTCCAAATGCTAAAAAATTCAGATCAAATGTATCCC
AAGNTGCCNTTCAACCAAGATTCAAAGCTCCAANAAACTTTAAACCAANAAANACTGCT
Length of 3' end seq. 479
Connected seq. ID VHD101P
Connected seq. 
>VHD101P.Seq
ATTCCAAATTTAGAGAGATTGGGTATGCAATACAAAGTGTTAACTGCTCAAGAAATTATG
GAAGAGTATCCATTTAGAAACATTCCATCCAATCACCAAGGTGTTTTTGCTCCAGACAAT
GGTGTTATCAATTTACCATTGGTATTACGTTCTCTTTACAAGTTATGTTTACAATATGGT
TGTAAAATGGTAAGCCATGCAGAAGTTAAACTTATTAAAAATCTTAGCACAACAATGGTT
GAAATTGAAGTTGAACACACCGATGTTGACCAAAAAAATAAACAATCCTTCAAAGTTAAA
AGTAAAAAAGCTGCCATTACCAGTAATAGTTTCTGTAATCATATTATTAAACCATCATTT
GGATGGGAATTAGATATGACCATTTGGGAAATGACTTCAAGTTATTTCGTTGCAAAACCA
GGTCCAAATGCAACTGTTTTCAAAAGTATGTGGTTCAATTTCCAAAATGATACTGATAAT
GACCCAACAAAATCAAATTTATACTACGGTTTCCCAGCTGTACCATGGATGACTGATAAC
CATTGTAGAATTGCATTGGATGCAGCATTACGTCAAATTAAAGATCCAAACGATCGTCAT
GATGGTGTTGAAACTCATGATGTTAATCGTACTCGTG----------TGAAGTTCNCAAT
GTTCCAGTCGNTACCCTCCAACAATTATTTGTTGATTACAAATGNTGGGATTGGNATAAT
GATGATTATTCATCAGGNGCATTTGCTNTTTACAGTCCATCNCAATTNTTTCAATTGTTC
CCATCNCTTANTAAACCNTCNCCAGATGGTANATTCCNTTTAGNTGGNGAANCAACATNT
GTTCATCANGGNTGGGTCATTGGTTNTNTTAACTNTGCCTATCGNTCAGTCGATCACATT
TTTCAAGTTGAAGGTNTTGATGAGTTACGNGCCAAATTACGTNTCAATTGGGGTTTCATC
GATGAAGTTGAANATCCNCAANATGATCAACAATATGTTGACCCNCATCNCAATTTAAGN
GGTCCAAATGCTAAAAAATTCAGATCAAATGTATCCCAAGNTGCCNTTCAACCAAGATTC
AAAGCTCCAANAAACTTTAAACCAANAAANACTGCT
Length of connected seq. 1106
Full length Seq ID -
Full length Seq. -
Length of full length seq. -