>VHC888 (VHC888Q) /CSM/VH/VHC8-D/VHC888Q.Seq.d/
XXXXXXXXXXGAACCAGCTCCCATCTTCAAACACTCAACAAGCTGGTGGTGATGCTGAAG
ATGATCAATGTGATACCATTTTATCACAACTTCCACAACCAAGTGAAATGGCTGGTTACA
AAATTAACTCTATTCAATTTGAAAAGGATGATGATACCAATCATCATATCGATTTCATTA
CCGCTACCTCAAATTTAAGAGCTACCAACTATGCAATCAGTCCAGCTGATAAACATAAGA
CCAAAGGTATCGCCGGTAAAATCATTCCAGCTTTAGTTACCACTACTGCCGTAGTTGCTG
GTTTCGTTTGTATCGAATTGATTAAAGTTATTCAAAATAAAGCTTTGGAGAAATATAAGA
GCACCTTTATGAATTTAGGTATCCCATTCTTTGGTTTCGTTGAACCAATTGCCGCCCCAA
AGAACAAAATTCGTGAAGGCTGGACTTGGACACTTTGGGATCGTTTCGATGTTGATGGTG
ATATCACTCTCAAGGAGTTTTTAGATCTCTTTGAAAAGAAACATGGTTTGGATATTTCAA
TGCTCTCTTGTAAAGTTACACTTTTATATGCTCTCTTCACTGATAAGAAAACTAAAGAGG
AAAGATTAAAGATGAAAATCTCACAACTCTATGAAACCCTCTCAAAGAAAC

---NQLPSSNTQQAGGDAEDDQCDTILSQLPQPSEMAGYKINSIQFEKDDDTNHHIDFIT
ATSNLRATNYAISPADKHKTKGIAGKIIPALVTTTAVVAGFVCIELIKVIQNKALEKYKS
TFMNLGIPFFGFVEPIAAPKNKIREGWTWTLWDRFDVDGDITLKEFLDLFEKKHGLDISM
LSCKVTLLYALFTDKKTKEERLKMKISQLYETLSKK

Frame A:
---NQLPSSNTQQAGGDAEDDQCDTILSQLPQPSEMAGYKINSIQFEKDDDTNHHIDFIT
ATSNLRATNYAISPADKHKTKGIAGKIIPALVTTTAVVAGFVCIELIKVIQNKALEKYKS
TFMNLGIPFFGFVEPIAAPKNKIREGWTWTLWDRFDVDGDITLKEFLDLFEKKHGLDISM
LSCKVTLLYALFTDKKTKEERLKMKISQLYETLSKK


Frame B:
---tsshlqtlnklvvmlkminvipfyhnfhnqvkwlvtkltlfnlkrmmipiiisislp
lpqi*elptmqsvqlinirpkvspvksfql*lpllp*llvsfvsn*lklfkiklwrnira
pl*i*vshslvslnqlppqrtkfvkaglghfgivsmlmvislsrsf*islkrnmvwifqc
slvklhfymlsslirklkrkd*r*kshnsmkpsqrn


Frame C:
---papifkhstsww*c*r*sm*yhfittsttk*ngwlqn*lysi*kg**yqssyrfhyr
ylkfksyqlcnqss**t*dqryrr*nhssfsyhycrscwfrlyrid*sysk*sfgei*eh
lyefrypilwfr*tncrpkeqns*rldldtlgsfrc*w*yhsqgvfrsl*ketwfgyfna
ll*sytficslh**en*rgkikdenlttl*nplke

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHP810 (VHP810Q) /CSM/VH/VHP8-A/VHP810Q.Seq.d/                       1271   0.0
VHN736 (VHN736Q) /CSM/VH/VHN7-B/VHN736Q.Seq.d/                       1271   0.0
VHI449 (VHI449Q) /CSM/VH/VHI4-C/VHI449Q.Seq.d/                       1271   0.0
VHC888 (VHC888Q) /CSM/VH/VHC8-D/VHC888Q.Seq.d/                       1271   0.0
VHA348 (VHA348Q) /CSM/VH/VHA3-B/VHA348Q.Seq.d/                       1271   0.0
SHK685 (SHK685Q) /CSM/SH/SHK6-D/SHK685Q.Seq.d/                       1271   0.0
SHD849 (SHD849Q) /CSM/SH/SHD8-C/SHD849Q.Seq.d/                       1271   0.0
SHC430 (SHC430Q) /CSM/SH/SHC4-B/SHC430Q.Seq.d/                       1271   0.0
SHA779 (SHA779Q) /CSM/SH/SHA7-D/SHA779Q.Seq.d/                       1271   0.0
SHA307 (SHA307Q) /CSM/SH/SHA3-A/SHA307Q.Seq.d/                       1271   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CB933531|CB933531.1 ri31b11.y1 Meloidogyne chitwoodi egg pAMP1 v1 Meloidogyne chitwoodisequence.    64   1e-12  2
AZ930776|AZ930776.1 474.dhz58e03.s1 Saccharomyces unisporus NRRL Y-1556 Saccharomyces unisporus genomic clone 474.dhz58e03.s1, DNA sequence.    68   4e-12  2
ED188983|ED188983.1 AUAC-aav62e08.g1 Ascaris suum whole genome shotgun library (PMAJ_4 GSS) Ascaris suum genomic, genomic survey sequence.    60   8e-05  1
AM562633|AM562633.1 Paracentrotus lividus EST, clone MPMGp1173D192Q, 5' end.    38   1e-04  3
DR174755|DR174755.1 HR0003_N01:A Triphysaria versicolor (parasitic plant) root-tip, host reverse SSH library Triphysaria versicolor cDNA, mRNA sequence.    58   3e-04  1
DR174741|DR174741.1 HR0003_M08:A Triphysaria versicolor (parasitic plant) root-tip, host reverse SSH library Triphysaria versicolor cDNA, mRNA sequence.    58   3e-04  1
DR174736|DR174736.1 HR0003_M02:A Triphysaria versicolor (parasitic plant) root-tip, host reverse SSH library Triphysaria versicolor cDNA, mRNA sequence.    58   3e-04  1
AC134210|AC134210.1 Rattus norvegicus clone CH230-197N6, *** SEQUENCING IN PROGRESS ***, 60 unordered pieces.    58   3e-04  1
AC108277|AC108277.6 Rattus norvegicus clone CH230-27E16, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces.    58   3e-04  1
ES225710|ES225710.1 MpSG_ag4_A08 Myzus persicae, tobacco lineage, aphid salivary gland library Myzus persicae cDNA clone MpSG_ag4_A08, mRNA sequence.    34   5e-04  4

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55C16) RecName: Full=Ubiquitin-like modifier-activating enzyme...   425   e-118
EF468345_1(EF468345|pid:none) Pisum sativum ubiquitin activating...   237   3e-61
CR382138_755(CR382138|pid:none) Debaryomyces hansenii strain CBS...   224   1e-57
AE017341_129(AE017341|pid:none) Cryptococcus neoformans var. neo...   224   2e-57
CP000496_820(CP000496|pid:none) Pichia stipitis CBS 6054 chromos...   219   4e-56
FN392321_874(FN392321|pid:none) Pichia pastoris GS115 chromosome...   218   1e-55
BX908809_46(BX908809|pid:none) Neurospora crassa DNA linkage gro...   216   4e-55
(P22515) RecName: Full=Ubiquitin-activating enzyme E1 1;  &S3804...   216   4e-55
AB035495_1(AB035495|pid:none) Carassius auratus mRNA for ubiquit...   214   2e-54
AE016819_666(AE016819|pid:none) Ashbya gossypii (= Eremothecium ...   211   1e-53

 psg: 0.68  gvh: 0.36  alm: 0.27  top: 0.43  tms: 0.07  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: cytoplasmic
	 24.0 %: nuclear
	 16.0 %: endoplasmic reticulum
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: peroxisomal
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for VHC888 is cyt

>VHC888Z.Seq
NNNNNNNNNNGAACCAGCTCCCATCTTCAAACACTCAACAAGCTGGTGGTGATGCTGAAG
ATGATCAATGTGATACCATTTTATCACAACTTCCACAACCAAGTGAAATGGCTGGTTACA
AAATTAACTCTATTCAATTTGAAAAGGATGATGATACCAATCATCATATCGATTTCATTA
CCGCTACCTCAAATTTAAGAGCTACCAACTATGCAATCAGTCCAGCTGATAAACATAAGA
CCAAAGGTATCGCCGGTAAAATCATTCCAGCTTTAGTTACCACTACTGCCGTAGTTGCTG
GTTTCGTTTGTATCGAATTGATTAAAGTTATTCAAAATAAAGCTTTGGAGAAATATAAGA
GCACCTTTATGAATTTAGGTATCCCATTCTTTGGTTTCGTTGAACCAATTGCCGCCCCAA
AGAACAAAATTCGTGAAGGCTGGACTTGGACACTTTGGGATCGTTTCGATGTTGATGGTG
ATATCACTCTCAAGGAGTTTTTAGATCTCTTTGAAAAGAAACATGGTTTGGATATTTCAA
TGCTCTCTTGTAAAGTTACACTTTTATATGCTCTCTTCACTGATAAGAAAACTAAAGAGG
AAAGATTAAAGATGAAAATCTCACAACTCTATGAAACCCTCTCAAAGAAAC