VHC845
Library VH
(Link to library)
Clone ID VHC845
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11159-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VHC845 (VHC845Q) /CSM/VH/VHC8-B/VHC845Q.Seq.d/
ATTATGGNGCAGGTGGTCCAGAAGGTACTTTATTAGGACCAATTCCAAATTTAGAGAGAT
TGGGTATGCAATACAAAGTGTTAACTGCTCAAGAAATTATGGAAGAGTATCCATTTANAA
ACATTCCATCCAATCACCAAGGTGTTTTTGCTCCAGACAATGGTGTTATCAATTTACCAT
TGGTATTACGTTCTCTTTACAAGTTATGTTTACAATATGGTTGTAAAATGGTAAGXXXXX
XXXXX
sequence update 2002.10.25
Translated Amino Acid sequence
YGAGGPEGTLLGPIPNLERLGMQYKVLTAQEIMEEYPFXNIPSNHQGVFAPDNGVINLPL
VLRSLYKLCLQYGCKMV---


Translated Amino Acid sequence (All Frames)
Frame A:
imxqvvqkvly*dqfqi*rdwvcntkc*llkklwksihlxtfhpitkvfllqtmvlsiyh
wyyvlftsyvynmvvkw*---


Frame B:
lwxrwsrryfirtnskfreigyaiqsvncsrnygrvsixkhsiqsprcfcsrqwcyqfti
gitfslqvmftiwl*ng---


Frame C:
YGAGGPEGTLLGPIPNLERLGMQYKVLTAQEIMEEYPFXNIPSNHQGVFAPDNGVINLPL
VLRSLYKLCLQYGCKMV---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHQ418 (VHQ418Q) /CSM/VH/VHQ4-A/VHQ418Q.Seq.d/ 454 e-127
VHQ415 (VHQ415Q) /CSM/VH/VHQ4-A/VHQ415Q.Seq.d/ 454 e-127
VHP888 (VHP888Q) /CSM/VH/VHP8-D/VHP888Q.Seq.d/ 454 e-127
VHP706 (VHP706Q) /CSM/VH/VHP7-A/VHP706Q.Seq.d/ 454 e-127
VHP659 (VHP659Q) /CSM/VH/VHP6-C/VHP659Q.Seq.d/ 454 e-127
VHO851 (VHO851Q) /CSM/VH/VHO8-C/VHO851Q.Seq.d/ 454 e-127
VHO717 (VHO717Q) /CSM/VH/VHO7-A/VHO717Q.Seq.d/ 454 e-127
VHO690 (VHO690Q) /CSM/VH/VHO6-D/VHO690Q.Seq.d/ 454 e-127
VHO630 (VHO630Q) /CSM/VH/VHO6-B/VHO630Q.Seq.d/ 454 e-127
VHO440 (VHO440Q) /CSM/VH/VHO4-B/VHO440Q.Seq.d/ 454 e-127

own update 2004. 5.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

EJ261209|EJ261209.1 1095349040450 Global-Ocean-Sampling_GS-27-01-01-1P8-2P0KB marine metagenome genomic clone 1061005495618 3', genomic survey sequence. 48 0.11 1
EJ150489|EJ150489.1 1092343756363 Global-Ocean-Sampling_GS-27-01-01-1P8-2P0KB marine metagenome genomic clone 1061001453166 5', genomic survey sequence. 48 0.11 1
EC294756|EC294756.1 BRAINF091458B18 POSSUM_01-POSSUM-C-BRAIN-2KB Trichosurus vulpecula cDNA clone 1061025023612, mRNA sequence. 46 0.44 1
CC224246|CC224246.1 CH261-144J20_RM1.2 CH261 Gallus gallus genomic clone CH261-144J20, DNA sequence. 44 1.7 1
AE017197|AE017197.1 Rickettsia typhi str. Wilmington complete genome. 44 1.7 1
CT787538|CT787538.1 Paramecium tetraurelia 5-PRIME EST from clone LK0ADA26YP21. 38 6.0 2
DT730448|DT730448.1 EST1164298 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1SY40, mRNA sequence. 42 6.8 1
DR923738|DR923738.1 EST1115277 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1MX84, mRNA sequence. 42 6.8 1
EC388624|EC388624.1 D07_D07gm4n14_pDNRf_491831 Myzus persicae, line G006, whole aphid library Myzus persicae cDNA clone D07_D07gm4n14_pDNRf_491831, mRNA sequence. 42 6.8 1
AC126595|AC126595.5 Rattus norvegicus clone CH230-26N20, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces. 42 6.8 1
dna update 2007. 5. 8
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CU638744_413(CU638744|pid:none) Podospora anserina genomic DNA c... 92 4e-18
AM286415_1545(AM286415|pid:none) Yersinia enterocolitica subsp. ... 43 0.003
CP000267_235(CP000267|pid:none) Rhodoferax ferrireducens T118, c... 40 0.020
CP000647_1043(CP000647|pid:none) Klebsiella pneumoniae subsp. pn... 40 0.026
CP000826_1885(CP000826|pid:none) Serratia proteamaculans 568, co... 40 0.026
CP000783_2229(CP000783|pid:none) Enterobacter sakazakii ATCC BAA... 39 0.057
(B7NAT4) RecName: Full=N-methyl-L-tryptophan oxidase; S... 39 0.075
(B7NL75) RecName: Full=N-methyl-L-tryptophan oxidase; S... 38 0.13
AP006725_1851(AP006725|pid:none) Klebsiella pneumoniae NTUH-K204... 38 0.13
CP000964_3424(CP000964|pid:none) Klebsiella pneumoniae 342, comp... 38 0.13
protein update 2009. 6.28
PSORT

psg: 0.75 gvh: 0.33 alm: 0.40 top: 0.53 tms: 0.00 mit: 0.08 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 1.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

28.0 %: cytoplasmic
20.0 %: nuclear
20.0 %: plasma membrane
8.0 %: extracellular, including cell wall
8.0 %: Golgi
8.0 %: vesicles of secretory system
4.0 %: cytoskeletal
4.0 %: peroxisomal

>> prediction for VHC845 is cyt

5' end seq. ID VHC845F
5' end seq.
>VHC845F.Seq
ATTATGGNGCAGGTGGTCCAGAAGGTACTTTATTAGGACCAATTCCAAATTTAGAGAGAT
TGGGTATGCAATACAAAGTGTTAACTGCTCAAGAAATTATGGAAGAGTATCCATTTANAA
ACATTCCATCCAATCACCAAGGTGTTTTTGCTCCAGACAATGGTGTTATCAATTTACCAT
TGGTATTACGTTCTCTTTACAAGTTATGTTTACAATATGGTTGTAAAATGGTAAGNNNNN
NNNNN
Length of 5' end seq. 245
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -