>VHC837 (VHC837Q) /CSM/VH/VHC8-B/VHC837Q.Seq.d/
AATAGAAATTTTGTAACATCATCACAAACCAGTCGATTGATTTCCAAAACCTTAATTCAT
TGTGTTTTCAATATTTTTCAATTAATCATTTATTTATTAAGTTTTTCAAAAAAAAAATAA
ATAAATAANCAATAAATTAATTATATTTAAATAAATAACAGTATTTTTTTTTTTTTTTTT
TNGGGNTTTTTTTTTNCTTXXXXXXXXXX

*KFCNIITNQSIDFQNLNSLCFQYFSINHLFIKFFKKKINK*xin*lylnk*qyfffffx
gxffx---

Frame A:
nrnfvtssqtsrlisktlihcvfnifqliiyllsfskkk*inxq*inyi*innsifffff
xgfffx---


Frame B:
ieil*hhhkpvd*fpkp*fivfsiffn*sfiy*vfqkknk*ixnkliifk*itvffffff
xxffx---


Frame C:
*KFCNIITNQSIDFQNLNSLCFQYFSINHLFIKFFKKKINK*xin*lylnk*qyfffffx
gxffx---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHC837 (VHC837Q) /CSM/VH/VHC8-B/VHC837Q.Seq.d/                        258   3e-68
VHI746 (VHI746Q) /CSM/VH/VHI7-B/VHI746Q.Seq.d/                        244   4e-64
VSI302 (VSI302Q) /CSM/VS/VSI3-A/VSI302Q.Seq.d/                         44   8e-04
SSJ518 (SSJ518Q) /CSM/SS/SSJ5-A/SSJ518Q.Seq.d/                         40   0.012
SSE321 (SSE321Q) /CSM/SS/SSE3-A/SSE321Q.Seq.d/                         40   0.012
CHI610 (CHI610Q) /CSM/CH/CHI6-A/CHI610Q.Seq.d/                         38   0.049
VSI846 (VSI846Q) /CSM/VS/VSI8-B/VSI846Q.Seq.d/                         36   0.20
VHN657 (VHN657Q) /CSM/VH/VHN6-C/VHN657Q.Seq.d/                         36   0.20
VHN260 (VHN260Q) /CSM/VH/VHN2-C/VHN260Q.Seq.d/                         36   0.20
VHM442 (VHM442Q) /CSM/VH/VHM4-B/VHM442Q.Seq.d/                         36   0.20

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CL527635|CL527635.1 83o18rp42.r1 RPCI-42 Bos taurus genomic clone 83o18rp42, genomic survey sequence.    52   0.006  1
AC128618|AC128618.2 Rattus norvegicus clone CH230-290A22, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    50   0.024  1
AC097863|AC097863.6 Rattus norvegicus clone CH230-84I23, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    50   0.024  1
AC133183|AC133183.3 Mus musculus BAC clone RP24-185O19 from chromosome 12, complete sequence.    50   0.024  1
DU420503|DU420503.1 1098421082261 CHORI-243 Ovis aries genomic clone CH243-276B16, genomic survey sequence.    48   0.093  1
DU312897|DU312897.1 1098312098583 CHORI-243 Ovis aries genomic clone CH243-18M7, genomic survey sequence.    48   0.093  1
DU211287|DU211287.1 1098538183724 CHORI-243 Ovis aries genomic clone CH243-445B11, genomic survey sequence.    48   0.093  1
AC170307|AC170307.3 Bos taurus clone CH240-198B21, WORKING DRAFT SEQUENCE, 13 unordered pieces.    38   0.72   2
AL117200|AL117200.2 Caenorhabditis elegans YAC Y50E8A.             36   0.81   2
EJ956860|EJ956860.1 1093018976211 Global-Ocean-Sampling_GS-30-02-01-1P0-1P3KB marine metagenome genomic clone 1061002936474 5', genomic survey sequence.    32   1.0    2

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 149,796,762

 psg: 0.75  gvh: 0.30  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.34  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: extracellular, including cell wall

>> prediction for VHC837 is nuc

>VHC837F.Seq
AATAGAAATTTTGTAACATCATCACAAACCAGTCGATTGATTTCCAAAACCTTAATTCAT
TGTGTTTTCAATATTTTTCAATTAATCATTTATTTATTAAGTTTTTCAAAAAAAAAATAA
ATAAATAANCAATAAATTAATTATATTTAAATAAATAACAGTATTTTTTTTTTTTTTTTT
TNGGGNTTTTTTTTTNCTTNNNNNNNNNN