VHC776 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VHC776
Library	VH (Link to library)
Clone ID	VHC776 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U15722-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VH/VHC7-D/VHC776Q.Seq.d/
Representative seq. ID	VHC776P (Link to Original site)
Representative DNA sequence	>VHC776 (VHC776Q) /CSM/VH/VHC7-D/VHC776Q.Seq.d/ ANGGAAAAAACACACCAAAATTAAATAAGTAAGAATAAAAATGAAATATTTATTAGTATA TTTACACATATTACTATTTTGTTTATTAAAGATCAATAGCCAAAAGTATTGCACTTATAG TGGTGTTGGAGAAGACTATAATATCAAATTTGATGTCTTACAAACATATGGTGTTGGTTT TCATTACTCATATTTAAGTGTTATTTTTACAACTTGTAATTATACTATTCCTTGTGGTAG TAATAGTAATAATGTATTGTGTGGATCATATTCAATTGTTCCACGCAAGTATCTTTCATT GGGATTTGTTAATGGCAGTACACATAGTTATAGCAAAGACGGACTAATGATAACATATAT ATCACAGGATACAACAAATGATAATGATTGCAAAAGATATACAACAAATGTGATTTTTCA ATGTAGACCAGATGGTGATGTATCCGATTCATTAGATGTTGGCATCGACAATATACTTAT TGATTCATGTATTGTTGAATTCACACTCTCTTCACGTACAGTGTGTCAAACATGTCCAAA CTGTTTAAAAACACATCAAACATCATGTAATGTGAAAAGTGGTXXXXXXXXXXATAATAA TANNGGTAATGGACCAGCCATAATGAACATTTGGGTAATGGTTGNGAATTTACTCGATGT CCANTCGATTGTTNGACACCAAAATGGTACTTGTGATAATAATACTGGTAATTGTACATG CCATAATGAACANTTTGGTAATTCTTGTGAATTTACTCGATGTCCACTCGATTGTTCGAC ACCNAATGGTACTTGTGATAATAATNCTGGTAATTGTACATGCCATAATGAACATTTTGG TAATGGTTGTGAATTCACTCAATGCCCACTCTATTGTTCAACACCAAATGGTACTTGTGA TATTAATAGTGGTATTTGTACATGTGATAATGAACATATTGGTAATGGTTGCGAAATTAA ATTTATTGAATGTAAACATAAATGTTCAACCAAACATGGAATATGTGATAATGATAGTGG TAATTGTAAATGTGATACTCAAACAAAAGGATTAACGTGTGAAGAATCAAGATTATTAAT TGAATCATTAGACTCAATCAATTCAAAAGGTGGTNCAATAAATATAATTGGTTATTTTGN AAATACAACATCATTATTAACAATTGAAATTGGTGAATCACAATGTAAAAATATCAAAGT ATTCAATGAANCAACATTAAAATGTGATATTGGTGAAGGTAAAGGTATTCATAATATTAC AATCATTGATGATGACCTTTCGTTCACAGCAATCAATAAGTTCCAATATCTCGATGAAAA AACAAAAATCTCAAAAATATCGAGAGGTGCAATTGCTGGTATTGTTGTTGGTTGTGTTGT TGCTGTTTCATTAATNGGTTCTATTGCTTTTTATTATCATCACAAAAATAAAAAGGTTAA TCTTTTCTTCTAAAAACTAAAATAAAATTTAACCATTA
sequence update	2002.10.25
Translated Amino Acid sequence	xkkhtkikVRIKMKYLLVYLHILLFCLLKINSQKYCTYSGVGEDYNIKFDVLQTYGVGF HYSYLSVIFTTCNYTIPCGSNSNNVLCGSYSIVPRKYLSLGFVNGSTHSYSKDGLMITYI SQDTTNDNDCKRYTTNVIFQCRPDGDVSDSLDVGIDNILIDSCIVEFTLSSRTVCQTCPN CLKTHQTSCNVKSG--- ---NNXGNGPAIMNIWVMVXNLLDVXSIVXHQNGTCDNNTGNCTCHNEXFGNSCEFTRCP LDCSTPNGTCDNNXGNCTCHNEHFGNGCEFTQCPLYCSTPNGTCDINSGICTCDNEHIGN GCEIKFIECKHKCSTKHGICDNDSGNCKCDTQTKGLTCEESRLLIESLDSINSKGGXINI IGYFXNTTSLLTIEIGESQCKNIKVFNEXTLKCDIGEGKGIHNITIIDDDLSFTAINKFQ YLDEKTKISKISRGAIAGIVVGCVVAVSLXGSIAFYYHHKNKKVNLFFklk*nlti
Translated Amino Acid sequence (All Frames)	Frame A: xekthqnisknkneifisifthitilfikdqpkvlhlwcwrrlyqicltniwcwf sllifkcyfynllyyslw****civwiifncstqvsfigicwqytlqrrtndniy itgynk**lqkiynkcdfsmtrwcirfircwhrqytyfmycihtlftysvsnmsk lfkntsnimcekw--- ---iiixvmdqp*tfgwlxiysmsxrlxdtkmvlviiilvivhaimnxlvilvnlldv hsivrhxmvlviixlvivhaimnilvmvvnslnahsivqhqmvlvilivvfvhvimnilv mvaklnllnvninvqpnmeyvimivvivnvilkqkdrvknqdylnhtqsiqkvvqi lvilxiqhhyqlklvnhnvkiskysmxqhnvilvkvkvfiilqslmmtfrsqqsiss nismkkqksqkyrevqllvlllvvlllfhxvlllfiiitkikrlifssknnkipl Frame B: xkkhtkikVRIKMKYLLVYLHILLFCLLKINSQKYCTYSGVGEDYNIKFDVLQTYGVGF HYSYLSVIFTTCNYTIPCGSNSNNVLCGSYSIVPRKYLSLGFVNGSTHSYSKDGLMITYI SQDTTNDNDCKRYTTNVIFQCRPDGDVSDSLDVGIDNILIDSCIVEFTLSSRTVCQTCPN CLKTHQTSCNVKSG--- ---xxwtshnehlgngxeftrcpxdcxtpkwyl**ywlymp*txwfliysms trlfdtxwyl*xwlymp*tfwwlihsmptllfntkwylywylymtyw wlrniymtmfnqtwnm***wlmysnkrinvrikiiniirlnqfkrwxnky nwlfxkyniiinnnwitmkyqsiqxnikmywrrysyynh**pfvhsnqvp isrknknlkniercncwyccwlccccfinxfycfllssqkkgsfllktkikfnh Frame C: gkntpklnkekniyyiytyyyfvyrsiaksialivvlektiisnlmsykhmvlvf ithivlflqlviilflvvvivimycvdhiqlfhasifhwdllmavhiviaktd*hiy hriqqmimiakdiqqmffnvdqmvmypihmlastiyllihvllnshslhvqcvkhvqt vkhikhhvmkv--- ---NNXGNGPAIMNIWVMVXNLLDVXSIVXHQNGTCDNNTGNCTCHNEXFGNSCEFTRCP LDCSTPNGTCDNNXGNCTCHNEHFGNGCEFTQCPLYCSTPNGTCDINSGICTCDNEHIGN GCEIKFIECKHKCSTKHGICDNDSGNCKCDTQTKGLTCEESRLLIESLDSINSKGGXINI IGYFXNTTSLLTIEIGESQCKNIKVFNEXTLKCDIGEGKGIHNITIIDDDLSFTAINKFQ YLDEKTKISKISRGAIAGIVVGCVVAVSLXGSIAFYYHHKNKKVNLFFklk*nlti
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VHC776 (VHC776Q) /CSM/VH/VHC7-D/VHC776Q.Seq.d/ 2480 0.0 VHE492 (VHE492Q) /CSM/VH/VHE4-D/VHE492Q.Seq.d/ 1318 0.0 VHQ143 (VHQ143Q) /CSM/VH/VHQ1-B/VHQ143Q.Seq.d/ 1306 0.0 AHH863 (AHH863Q) /CSM/AH/AHH8-C/AHH863Q.Seq.d/ 1306 0.0 VHO292 (VHO292Q) /CSM/VH/VHO2-D/VHO292Q.Seq.d/ 1304 0.0 VHK587 (VHK587Q) /CSM/VH/VHK5-D/VHK587Q.Seq.d/ 1304 0.0 VHP673 (VHP673Q) /CSM/VH/VHP6-D/VHP673Q.Seq.d/ 1302 0.0 VHP265 (VHP265Q) /CSM/VH/VHP2-C/VHP265Q.Seq.d/ 1302 0.0 VHI141 (VHI141Q) /CSM/VH/VHI1-B/VHI141Q.Seq.d/ 1302 0.0 FC-BE20 (FC-BE20Q) /CSM/FC/FC-BE/FC-BE20Q.Seq.d/ 1302 0.0
own update	2004.12.24
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AC115592\|AC115592.2 Dictyostelium discoideum chromosome 2 map 1-125959 strain AX4, complete sequence. 84 2e-32 7 AC116924\|AC116924.3 Dictyostelium discoideum chromosome 2 map 6357117-6445670 strain AX4, complete sequence. 90 4e-31 8 AC117076\|AC117076.3 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence. 135 3e-28 10 AY392441\|AY392441.1 Dictyostelium discoideum possible blackjack gene, complete cds. 80 2e-10 1 AC115683\|AC115683.2 Dictyostelium discoideum chromosome 2 map complement(6135149-6105997) strain AX4, complete sequence. 54 3e-05 5 AP007175\|AP007175.1 Aspergillus oryzae RIB40 genomic DNA, SC010. 62 5e-05 1 AC117075\|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 46 1e-04 2 AE014820\|AE014820.1 Plasmodium falciparum 3D7 chromosome 14 section 5 of 13 of the complete sequence. 34 0.014 12 AC148237\|AC148237.7 Medicago truncatula clone mth2-1o14, complete sequence. 36 0.020 7 AE014819\|AE014819.1 Plasmodium falciparum 3D7 chromosome 14 section 4 of 13 of the complete sequence. 36 0.041 12
dna update	2007. 5. 8
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AC117075_64(AC117075\|pid:none) Dictyostelium discoideum chromoso... 108 6e-22 AC116100_9(AC116100\|pid:none) Dictyostelium discoideum chromosom... 89 4e-16 AC116920_20(AC116920\|pid:none) Dictyostelium discoideum chromoso... 83 3e-14 AC116920_24(AC116920\|pid:none) Dictyostelium discoideum chromoso... 80 2e-13 AC116963_42(AC116963\|pid:none) Dictyostelium discoideum chromoso... 78 7e-13 AC116967_7(AC116967\|pid:none) Dictyostelium discoideum chromosom... 77 1e-12 AC116920_25(AC116920\|pid:none) Dictyostelium discoideum chromoso... 75 6e-12 AC116956_34(AC116956\|pid:none) Dictyostelium discoideum chromoso... 74 2e-11 AC116967_8(AC116967\|pid:none) Dictyostelium discoideum chromosom... 72 5e-11 AC117081_39(AC117081\|pid:none) Dictyostelium discoideum chromoso... 72 5e-11
protein update	2009. 6.28
PSORT	psg: 0.93 gvh: 0.70 alm: 0.24 top: 0.40 tms: 0.07 mit: 0.32 mip: 0.02 nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.77 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 1.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 0.00 36.0 %: plasma membrane 32.0 %: extracellular, including cell wall 20.0 %: endoplasmic reticulum 12.0 %: Golgi >> prediction for VHC776 is pla
5' end seq. ID	VHC776F
5' end seq.	>VHC776F.Seq ANGGAAAAAACACACCAAAATTAAATAAGTAAGAATAAAAATGAAATATTTATTAGTATA TTTACACATATTACTATTTTGTTTATTAAAGATCAATAGCCAAAAGTATTGCACTTATAG TGGTGTTGGAGAAGACTATAATATCAAATTTGATGTCTTACAAACATATGGTGTTGGTTT TCATTACTCATATTTAAGTGTTATTTTTACAACTTGTAATTATACTATTCCTTGTGGTAG TAATAGTAATAATGTATTGTGTGGATCATATTCAATTGTTCCACGCAAGTATCTTTCATT GGGATTTGTTAATGGCAGTACACATAGTTATAGCAAAGACGGACTAATGATAACATATAT ATCACAGGATACAACAAATGATAATGATTGCAAAAGATATACAACAAATGTGATTTTTCA ATGTAGACCAGATGGTGATGTATCCGATTCATTAGATGTTGGCATCGACAATATACTTAT TGATTCATGTATTGTTGAATTCACACTCTCTTCACGTACAGTGTGTCAAACATGTCCAAA CTGTTTAAAAACACATCAAACATCATGTAATGTGAAAAGTGGTNNNNNNNNNN
Length of 5' end seq.	593
3' end seq. ID	VHC776Z
3' end seq.	>VHC776Z.Seq NNNNNNNNNNATAATAATANNGGTAATGGACCAGCCATAATGAACATTTGGGTAATGGTT GNGAATTTACTCGATGTCCANTCGATTGTTNGACACCAAAATGGTACTTGTGATAATAAT ACTGGTAATTGTACATGCCATAATGAACANTTTGGTAATTCTTGTGAATTTACTCGATGT CCACTCGATTGTTCGACACCNAATGGTACTTGTGATAATAATNCTGGTAATTGTACATGC CATAATGAACATTTTGGTAATGGTTGTGAATTCACTCAATGCCCACTCTATTGTTCAACA CCAAATGGTACTTGTGATATTAATAGTGGTATTTGTACATGTGATAATGAACATATTGGT AATGGTTGCGAAATTAAATTTATTGAATGTAAACATAAATGTTCAACCAAACATGGAATA TGTGATAATGATAGTGGTAATTGTAAATGTGATACTCAAACAAAAGGATTAACGTGTGAA GAATCAAGATTATTAATTGAATCATTAGACTCAATCAATTCAAAAGGTGGTNCAATAAAT ATAATTGGTTATTTTGNAAATACAACATCATTATTAACAATTGAAATTGGTGAATCACAA TGTAAAAATATCAAAGTATTCAATGAANCAACATTAAAATGTGATATTGGTGAAGGTAAA GGTATTCATAATATTACAATCATTGATGATGACCTTTCGTTCACAGCAATCAATAAGTTC CAATATCTCGATGAAAAAACAAAAATCTCAAAAATATCGAGAGGTGCAATTGCTGGTATT GTTGTTGGTTGTGTTGTTGCTGTTTCATTAATNGGTTCTATTGCTTTTTATTATCATCAC AAAAATAAAAAGGTTAATCTTTTCTTCTAAAAACTAAAATAAAATTTAACCATTA
Length of 3' end seq.	895
Connected seq. ID	VHC776P
Connected seq.	>VHC776P.Seq ANGGAAAAAACACACCAAAATTAAATAAGTAAGAATAAAAATGAAATATTTATTAGTATA TTTACACATATTACTATTTTGTTTATTAAAGATCAATAGCCAAAAGTATTGCACTTATAG TGGTGTTGGAGAAGACTATAATATCAAATTTGATGTCTTACAAACATATGGTGTTGGTTT TCATTACTCATATTTAAGTGTTATTTTTACAACTTGTAATTATACTATTCCTTGTGGTAG TAATAGTAATAATGTATTGTGTGGATCATATTCAATTGTTCCACGCAAGTATCTTTCATT GGGATTTGTTAATGGCAGTACACATAGTTATAGCAAAGACGGACTAATGATAACATATAT ATCACAGGATACAACAAATGATAATGATTGCAAAAGATATACAACAAATGTGATTTTTCA ATGTAGACCAGATGGTGATGTATCCGATTCATTAGATGTTGGCATCGACAATATACTTAT TGATTCATGTATTGTTGAATTCACACTCTCTTCACGTACAGTGTGTCAAACATGTCCAAA CTGTTTAAAAACACATCAAACATCATGTAATGTGAAAAGTGGT----------ATAATAA TANNGGTAATGGACCAGCCATAATGAACATTTGGGTAATGGTTGNGAATTTACTCGATGT CCANTCGATTGTTNGACACCAAAATGGTACTTGTGATAATAATACTGGTAATTGTACATG CCATAATGAACANTTTGGTAATTCTTGTGAATTTACTCGATGTCCACTCGATTGTTCGAC ACCNAATGGTACTTGTGATAATAATNCTGGTAATTGTACATGCCATAATGAACATTTTGG TAATGGTTGTGAATTCACTCAATGCCCACTCTATTGTTCAACACCAAATGGTACTTGTGA TATTAATAGTGGTATTTGTACATGTGATAATGAACATATTGGTAATGGTTGCGAAATTAA ATTTATTGAATGTAAACATAAATGTTCAACCAAACATGGAATATGTGATAATGATAGTGG TAATTGTAAATGTGATACTCAAACAAAAGGATTAACGTGTGAAGAATCAAGATTATTAAT TGAATCATTAGACTCAATCAATTCAAAAGGTGGTNCAATAAATATAATTGGTTATTTTGN AAATACAACATCATTATTAACAATTGAAATTGGTGAATCACAATGTAAAAATATCAAAGT ATTCAATGAANCAACATTAAAATGTGATATTGGTGAAGGTAAAGGTATTCATAATATTAC AATCATTGATGATGACCTTTCGTTCACAGCAATCAATAAGTTCCAATATCTCGATGAAAA AACAAAAATCTCAAAAATATCGAGAGGTGCAATTGCTGGTATTGTTGTTGGTTGTGTTGT TGCTGTTTCATTAATNGGTTCTATTGCTTTTTATTATCATCACAAAAATAAAAAGGTTAA TCTTTTCTTCTAAAAACTAAAATAAAATTTAACCATTA
Length of connected seq.	1468
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas