VHC719
Library VH
(Link to library)
Clone ID VHC719
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16216-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VHC719 (VHC719Q) /CSM/VH/VHC7-A/VHC719Q.Seq.d/
AATTTTTTTATTTATTGTCATTGTTATTTTATTTGTACCATTTATTTATTTTACTTTTTA
TTTATAAACAAAAAAATACATTAAAATTATTTAAACAATAAATTGAAAAAAAAAAXXXXX
XXXXX
sequence update 2002.10.25
Translated Amino Acid sequence
FFYLLSLLFYLYHLFILLFIYKQKNTLKLFKQ*iekk---


Translated Amino Acid sequence (All Frames)
Frame A:
nffiychcyfictiylfyflfinkkih*nylnnklkkk---


Frame B:
iflfivivilfvpfiyftfyl*tkkyikii*tin*kk---


Frame C:
FFYLLSLLFYLYHLFILLFIYKQKNTLKLFKQ*iekk---


Homology vs CSM-cDNA

***** No hits found ******

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 0
Number of Sequences: 97611
Number of extensions: 0
Number of successful extensions: 0
Number of sequences better than 10.0: 0
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 0
length of query: 125
length of database: 80,480,566
effective HSP length: 17
effective length of query: 108
effective length of database: 78,821,179
effective search space: 8512687332
effective search space used: 8512687332
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)








Dictyostelium discoideum cDNA Project Home



own update 2009. 4. 4
Homology vs DNA

***** No hits found ******

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 71426446
Number of Hits to DB: 0
Number of sequences better than 10.0: 0
Length of query: 125
Length of database: 75,251,064,396
Length adjustment: 22
Effective length of query: 103
Effective length of database: 73,679,682,584
Effective search space: 7589007306152
Effective search space used: 7589007306152
X1: 11 (21.8 bits)
S2: 20 (40.1 bits)

ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.

------=_Part_0_8984226.1178038022331--









Dictyostelium discoideum cDNA Project Home



dna update 2007. 5. 2
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 74,285,228
protein update 2009. 6.28
PSORT

psg: 0.98 gvh: 0.44 alm: 0.22 top: 0.63 tms: 0.07 mit: 0.35 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.80 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.52 leu: 0.52 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

32.0 %: cytoplasmic
24.0 %: mitochondrial
20.0 %: nuclear
8.0 %: plasma membrane
8.0 %: endoplasmic reticulum
4.0 %: vesicles of secretory system
4.0 %: peroxisomal

>> prediction for VHC719 is cyt

5' end seq. ID VHC719F
5' end seq.
>VHC719F.Seq
AATTTTTTTATTTATTGTCATTGTTATTTTATTTGTACCATTTATTTATTTTACTTTTTA
TTTATAAACAAAAAAATACATTAAAATTATTTAAACAATAAATTGAAAAAAAAAANNNNN
NNNNN
Length of 5' end seq. 125
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -