>VHC687 (VHC687Q) /CSM/VH/VHC6-D/VHC687Q.Seq.d/
XXXXXXXXXXTCTTCAAAAGATTTCCTCTACACTCAAAGAAAAGGAAACAATCATTCAAT
CATATCAAGAGATTATGAGTCAATTAAAATATAATTTAAAGGATTCATCATTAATGGATA
AAAAAGATTCTGCCATTGTTCAACTACTTTATCAATTTTCGTCAATAACAAATAATTGTG
TTGGTAGTAGTAGTGGTGGTAGTAGCAGTAGTAATAATAGCGGCGCTGGAGGTAGTATTA
ATCCAACAGAGAATATATTGTTGGTAAAAGAAACCATTGTAAATAAGTCATTAGAGATTC
AATTGGAGGAATTGAAAAAGGAAAATCAAAAATTAAAAGAAAATTCAACAAATAATCAAA
CAAAATTATTAGAGTACGATTTAATTAAGCAAACCATTACCAATAGGATACAGATAGAAG
CTGTTTCAGTTGATAATCTTTTAGGAGATAAATTGGATTCACTCGAGATGAAAGACCTTG
ACAAGTTGGAAGAACTCTACCATAACGTTTTAAAGAAAGTTGGTTCCGCCAAACAAGATC
TACTTCAAAAACAACTATTAAAAATGCAAAGAGAAAAAGAAGAAAGTGCTGCAAATGGCA
ATGGTAAAACTTGTGTTGTTTGTGTTGATCTTTTAATTAATACCGTATTAGTACCTTGTA
GTACATAGTTGTATATGTAGTACTTGCTCAAAGTAAATTATCACTTTGTCCACTTTGCAG
AACCCCAATTAAAG

---LQKISSTLKEKETIIQSYQEIMSQLKYNLKDSSLMDKKDSAIVQLLYQFSSITNNCV
GSSSGGSSSSNNSGAGGSINPTENILLVKETIVNKSLEIQLEELKKENQKLKENSTNNQT
KLLEYDLIKQTITNRIQIEAVSVDNLLGDKLDSLEMKDLDKLEELYHNVLKKVGSAKQDL
LQKQLLKMQREKEESAANGNGKTCVVCVDLLINTVLVPCST*lym*yllkvnyhfvhfae
pqlk

Frame A:
---LQKISSTLKEKETIIQSYQEIMSQLKYNLKDSSLMDKKDSAIVQLLYQFSSITNNCV
GSSSGGSSSSNNSGAGGSINPTENILLVKETIVNKSLEIQLEELKKENQKLKENSTNNQT
KLLEYDLIKQTITNRIQIEAVSVDNLLGDKLDSLEMKDLDKLEELYHNVLKKVGSAKQDL
LQKQLLKMQREKEESAANGNGKTCVVCVDLLINTVLVPCST*lym*yllkvnyhfvhfae
pqlk


Frame B:
---fkrfplhskkrkqsfnhikrl*vn*nii*rihh*wikkilplfnyfinfrq*qiivl
vvvvvvvavviiaalevvliqqriycw*kkpl*ish*rfnwrn*krkikn*kkiqqiikq
ny*sti*lskplpigyr*klfqliif*einwihsr*ktltswknstitf*rklvppnkiy
fknny*kckekkkkvlqmamvklvlfvlif*lipy*ylvvhscicstcsk*iitlstlqn
pn*


Frame C:
---skdflytqrkgnnhsiisrdyesiki*fkgfiing*krfchcsttlsifvnnk*lcw
***ww**q****rrwr*y*snreyivgkrnhck*virdsiggiekgkskikrkfnk*snk
iirvrfn*anhyq*dtdrscfs**sfrr*igftrderp*qvgrtlp*rfkeswfrqtrst
skttiknakrkrrkcckwqw*nlcclc*sfn*yristl*yivvyvvlaqsklslcplcrt
pik

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHC687 (VHC687Q) /CSM/VH/VHC6-D/VHC687Q.Seq.d/                        729   0.0
VHK259 (VHK259Q) /CSM/VH/VHK2-C/VHK259Q.Seq.d/                        698   0.0
VHH138 (VHH138Q) /CSM/VH/VHH1-B/VHH138Q.Seq.d/                        698   0.0
VHA442 (VHA442Q) /CSM/VH/VHA4-B/VHA442Q.Seq.d/                        698   0.0
SLB481 (SLB481Q) /CSM/SL/SLB4-D/SLB481Q.Seq.d/                        698   0.0
CHG201 (CHG201Q) /CSM/CH/CHG2-A/CHG201Q.Seq.d/                        698   0.0
CHI217 (CHI217Q) /CSM/CH/CHI2-A/CHI217Q.Seq.d/                        682   0.0
SSB574 (SSB574Q) /CSM/SS/SSB5-D/SSB574Q.Seq.d/                        674   0.0
VHF711 (VHF711Q) /CSM/VH/VHF7-A/VHF711Q.Seq.d/                        662   0.0
VHF204 (VHF204Q) /CSM/VH/VHF2-A/VHF204Q.Seq.d/                        652   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL592077|AL592077.8 Zebrafish DNA sequence from clone XX-DZ35C18.    52   8e-05  2
CT301886|CT301886.1 Sus scrofa genomic clone CH242-214G5, genomic survey sequence.    60   9e-05  1
AC113390|AC113390.3 Homo sapiens chromosome 5 clone RP11-360C3, complete sequence.    50   3e-04  2
AC181043|AC181043.1 Strongylocentrotus purpuratus clone R3-3050G1, WORKING DRAFT SEQUENCE, 14 unordered pieces.    42   3e-04  2
AC174116|AC174116.2 Strongylocentrotus purpuratus clone R3-46M20, WORKING DRAFT SEQUENCE, 10 unordered pieces.    42   3e-04  2
AC127460|AC127460.2 Homo sapiens chromosome 5 clone RP11-689B23, complete sequence.    50   3e-04  2
AC176703|AC176703.1 Strongylocentrotus purpuratus clone R3-3088N23, WORKING DRAFT SEQUENCE, 21 unordered pieces.    42   3e-04  2
CV792687|CV792687.1 c-030112-2w_E01.abd cDNA library of Tamarix androssowii Tamarix androssowii cDNA, mRNA sequence.    58   4e-04  1
CF199667|CF199667.1 EST1268 Tamarix androssowii leaf Tamarix androssowii cDNA, mRNA sequence.    58   4e-04  1
AC200967|AC200967.1 Strongylocentrotus purpuratus clone R3-1117B13, WORKING DRAFT SEQUENCE, 17 unordered pieces.    58   4e-04  1

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 837,384,667

 psg: 0.66  gvh: 0.41  alm: 0.29  top: 0.53  tms: 0.07  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.15  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 20.0 %: cytoplasmic
	 16.0 %: nuclear
	 16.0 %: vesicles of secretory system
	 12.0 %: endoplasmic reticulum
	  8.0 %: Golgi
	  8.0 %: mitochondrial
	  8.0 %: plasma membrane
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for VHC687 is cyt

>VHC687Z.Seq
NNNNNNNNNNTCTTCAAAAGATTTCCTCTACACTCAAAGAAAAGGAAACAATCATTCAAT
CATATCAAGAGATTATGAGTCAATTAAAATATAATTTAAAGGATTCATCATTAATGGATA
AAAAAGATTCTGCCATTGTTCAACTACTTTATCAATTTTCGTCAATAACAAATAATTGTG
TTGGTAGTAGTAGTGGTGGTAGTAGCAGTAGTAATAATAGCGGCGCTGGAGGTAGTATTA
ATCCAACAGAGAATATATTGTTGGTAAAAGAAACCATTGTAAATAAGTCATTAGAGATTC
AATTGGAGGAATTGAAAAAGGAAAATCAAAAATTAAAAGAAAATTCAACAAATAATCAAA
CAAAATTATTAGAGTACGATTTAATTAAGCAAACCATTACCAATAGGATACAGATAGAAG
CTGTTTCAGTTGATAATCTTTTAGGAGATAAATTGGATTCACTCGAGATGAAAGACCTTG
ACAAGTTGGAAGAACTCTACCATAACGTTTTAAAGAAAGTTGGTTCCGCCAAACAAGATC
TACTTCAAAAACAACTATTAAAAATGCAAAGAGAAAAAGAAGAAAGTGCTGCAAATGGCA
ATGGTAAAACTTGTGTTGTTTGTGTTGATCTTTTAATTAATACCGTATTAGTACCTTGTA
GTACATAGTTGTATATGTAGTACTTGCTCAAAGTAAATTATCACTTTGTCCACTTTGCAG
AACCCCAATTAAAG