VHC679
Library VH
(Link to library)
Clone ID VHC679
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VHC679 (VHC679Q) /CSM/VH/VHC6-D/VHC679Q.Seq.d/
AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC
GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC
ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG
TTTCTGGTGATATGAGATATATGXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence
LSSAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKV
SGDMRY---


Translated Amino Acid sequence (All Frames)
Frame A:
nsrvqkk*stkwlisqsikfvplwtvvkiseicllllmsitvkplyqil*skelvllpik
flvi*di---


Frame B:
tleckkskvqng*fhnrsnschygps*kyqkyvcycscrsr*nhfirffnpkswyycr*s
fw*yeiy---


Frame C:
LSSAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKV
SGDMRY---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHP874 (VHP874Q) /CSM/modify/h12/F/treated/VHP874Q.Seq.d/ 363 e-100
VHH874 (VHH874Q) /CSM/VH/VHH8-D/VHH874Q.Seq.d/ 363 e-100
VHG874 (VHG874Q) /CSM/VH/VHG8-D/VHG874Q.Seq.d/ 363 e-100
VHP874 (VHP874Q) /CSM/modify/h12/F/treated/VHP874Q.Seq.d/ 363 e-100
VHH874 (VHH874Q) /CSM/VH/VHH8-D/VHH874Q.Seq.d/ 363 e-100
VHG874 (VHG874Q) /CSM/VH/VHG8-D/VHG874Q.Seq.d/ 363 e-100
VHQ491 (VHQ491Q) /CSM/VH/VHQ4-D/VHQ491Q.Seq.d/ 363 e-100
VHQ476 (VHQ476Q) /CSM/VH/VHQ4-D/VHQ476Q.Seq.d/ 363 e-100
VHQ473 (VHQ473Q) /CSM/VH/VHQ4-D/VHQ473Q.Seq.d/ 363 e-100
VHQ469 (VHQ469Q) /CSM/VH/VHQ4-C/VHQ469Q.Seq.d/ 363 e-100

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

M26017|M26017.1 D.discoideum elongation factor 2 mRNA, complete cds. 359 2e-95 1
DY907212|DY907212.1 CHAX1940.b1_G05.ab1 CHA(XYZ) common wild sunflower Helianthus annuus cDNA clone CHAX1940, mRNA sequence. 72 2e-13 2
DY938228|DY938228.1 CHPX5032.b1_O09.ab1 CHP(XYZ) plains sunflower Helianthus petiolaris cDNA clone CHPX5032, mRNA sequence. 72 2e-13 2
DY941362|DY941362.1 CHPX9185.b1_B18.ab1 CHP(XYZ) plains sunflower Helianthus petiolaris cDNA clone CHPX9185, mRNA sequence. 72 2e-13 2
EL476245|EL476245.1 CHUL4181.b1_J14.ab1 CHU(LMS) puzzle sunflower Helianthus paradoxus cDNA clone CHUL4181, mRNA sequence. 72 2e-13 2
EL513430|EL513430.1 CHUX465.b1_A21.ab1 CHU(XYZ) puzzle sunflower Helianthus paradoxus cDNA clone CHUX465, mRNA sequence. 72 2e-13 2
AZ931993|AZ931993.1 474.dhz93a01.s1 Saccharomyces unisporus NRRL Y-1556 Saccharomyces unisporus genomic clone 474.dhz93a01.s1, DNA sequence. 82 7e-12 1
DY905253|DY905253.1 CHAX11663.b1_N11.ab1 CHA(XYZ) common wild sunflower Helianthus annuus cDNA clone CHAX11663, mRNA sequence. 64 4e-11 2
DY910258|DY910258.1 CHAX5220.b1_G10.ab1 CHA(XYZ) common wild sunflower Helianthus annuus cDNA clone CHAX5220, mRNA sequence. 64 4e-11 2
DY889006|DY889006.1 CeleSEQ6474 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ6474, mRNA sequence. 66 7e-11 3
dna update 2007. 5. 1
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AY391422_1(AY391422|pid:none) Danio rerio eukaryotic translation... 87 1e-16
AM270011_29(AM270011|pid:none) Aspergillus niger contig An02c016... 87 1e-16
BT045031_1(BT045031|pid:none) Salmo salar clone ssal-rgf-510-120... 87 1e-16
BT059038_1(BT059038|pid:none) Salmo salar clone ssal-rgf-521-328... 87 1e-16
A40411(A40411) translation elongation factor eEF-2 - Caenorhabdi... 87 2e-16
AF534908_1(AF534908|pid:none) Tetrahymena thermophila elongation... 87 2e-16
AF248644_1(AF248644|pid:none) Filobasidiella neoformans var. neo... 87 2e-16
AY026074_1(AY026074|pid:none) Monosiga brevicollis elongation fa... 86 3e-16
BC089730_1(BC089730|pid:none) Xenopus tropicalis MGC108369 prote... 86 3e-16
CR859604_1(CR859604|pid:none) Pongo abelii mRNA; cDNA DKFZp468K0... 86 4e-16
protein update 2009. 6.28
PSORT

psg: 0.71 gvh: 0.38 alm: 0.54 top: 0.53 tms: 0.00 mit: 0.30 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
28.0 %: mitochondrial
24.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: peroxisomal

>> prediction for VHC679 is cyt

5' end seq. ID VHC679F
5' end seq.
>VHC679F.Seq
AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC
GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC
ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG
TTTCTGGTGATATGAGATATATGNNNNNNNNNN
Length of 5' end seq. 213
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -