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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHC671
Library VH
(Link to library)
Clone ID VHC671
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11308-1
Original site URL
Representative seq. ID VHC671P
(Link to Original site)
Representative DNA sequence 
>VHC671 (VHC671Q) /CSM/VH/VHC6-C/VHC671Q.Seq.d/
AACCCAACTGGTTATGCTTTCCAAGTTCAATGCTATTATGAACAACAAAATTCAATTGGT
CAAATGGTTTTCGCAGTTGTACCTGGTAGTTCAAAAGGTAGTTGGGAAGGTTTACCAGTT
GATACACCTTACCCAATTATGGATGCTGTTCAAAGAAATAGATTTAAAGCTCAACGTTTA
GATACAACCTATTGTTATGATTATCCTGATCTCTTTAGAGAGGCAATGCAAAACATTTGG
ATGGAATTTATGGAATCAAATAAAACAAATCCTGTCAAGGTTTATCCATCATCTCGTGGT
GTTTTAGAAAGTGTTGAATTGATTCTACCATCTACTATCAATACTGATTTCCCACCATCA
ATTCCATTGGATCAATTACCAGAAGAGAGTAAACCAAAACTTGAAGAAACCTATCGTCCA
ATTGGTTACAATGATATTGGTATGGTAGCTTGGAGAATGACTTTCTATACTCCTGAATAT
CCATTAGGTAGACAGGCCATAGTGATTGCTAATGATATCACTCACCAAATTGGTTCATTC
GGTCCACAAGAAGATATGTTATTTAAATTGGCTTCGGAATTGGCAAGAAAAGAAAAAATA
CCAAGAATTTATTTATCTTCAAATTCTGGTGCTAGAATTGGTTTAGCCGATGAAATTAAG
AGTAAATTTAAAGTAACTTGGAXXXXXXXXXXGAGGTGGTGTATTGGAACCAAATGGTAT
CGCTGAAATTAAATATAGAGATCCAGAACTCATTAAAACTATGCATCGTTTAGATCCAAA
ACTTATTGAATGGGATAAATCAATTCCAATTGGTGTTAGTGTCAATGGTTTGGATCAATC
TCAAAAGACCATTAAATCTCAAATTCAACAAAGAGAAAAAGAACTCTTGGGTATTTATCA
ACAAATTGCCATTAAATTTGCTGATCTTCATGATACTCCAGGTAGAATGAAAGCAAAGGG
TGTTATTAAACAAATGGTACCATGGAAATCGGCTCGTTCCTTCTTCTATGATCGTATAAA
GAGAAGATTATTTGAAGAGGATAAATTAAAATTAATCGATAAATCTCATCCAGGTTTAAA
TCGTCAATCAAAATTGAATCTATTGGAAACTTGGATTAAACAAATCCTTGGTAACAATCA
ATCAGTTGATTACCATCAAAACGATAAATTAATTTCTTCAACAATCGAATCAAATTCTCA
TATAATTAATGATAAGATTATTGATCTTTCAAAACAATATGCTATCAATCAAATTTTAAA
TTTTGTTCAATCAGATTCAGAATCAATCGTTGATGGTTTCCAAAATCTTTTACCTTTTAT
TTCAACTCAACAAAAAGAATTTTTATTGAATCTTNAAAAAAGATTTAAATAAATAAAAAA
AAAGTAATAATAA
sequence update 2002.10.25
Translated Amino Acid sequence 
NPTGYAFQVQCYYEQQNSIGQMVFAVVPGSSKGSWEGLPVDTPYPIMDAVQRNRFKAQRL
DTTYCYDYPDLFREAMQNIWMEFMESNKTNPVKVYPSSRGVLESVELILPSTINTDFPPS
IPLDQLPEESKPKLEETYRPIGYNDIGMVAWRMTFYTPEYPLGRQAIVIANDITHQIGSF
GPQEDMLFKLASELARKEKIPRIYLSSNSGARIGLADEIKSKFKVTW---

---GGVLEPNGIAEIKYRDPELIKTMHRLDPKLIEWDKSIPIGVSVNGLDQSQKTIKSQI
QQREKELLGIYQQIAIKFADLHDTPGRMKAKGVIKQMVPWKSARSFFYDRIKRRLFEEDK
LKLIDKSHPGLNRQSKLNLLETWIKQILGNNQSVDYHQNDKLISSTIESNSHIINDKIID
LSKQYAINQILNFVQSDSESIVDGFQNLLPFISTQQKEFLLNLXKRFK*ikkk***
Translated Amino Acid sequence (All Frames) 
Frame A:
NPTGYAFQVQCYYEQQNSIGQMVFAVVPGSSKGSWEGLPVDTPYPIMDAVQRNRFKAQRL
DTTYCYDYPDLFREAMQNIWMEFMESNKTNPVKVYPSSRGVLESVELILPSTINTDFPPS
IPLDQLPEESKPKLEETYRPIGYNDIGMVAWRMTFYTPEYPLGRQAIVIANDITHQIGSF
GPQEDMLFKLASELARKEKIPRIYLSSNSGARIGLADEIKSKFKVTW---

---evvywnqmvslklnieiqnslklciv*iqnllnginqfqlvlvsmvwinlkrplnlk
fnkekknswvfinklplnllifmilqve*kqrvllnkwyhgnrlvpssmiv*redylkri
n*n*sinliqv*ivnqn*iywklglnkslvtinqlitiktin*flqqsnqili*lmirll
ifqnnmlsikf*ilfnqiqnqslmvskifyllfqlnkknfy*ixkkdlnk*kksnn

Frame B:
tqlvmlskfnaimnnkiqlvkwfsqlylvvqkvvgkvyqlihltqlwmlfkeidlklnv*
iqpivmiilislerqcktfgwnlwnqikqilsrfihhlvvf*kvln*fyhllsilishhq
fhwinyqkrvnqnlkkpivqlvtmilvw*lge*lsillnih*vdrp**llmisltklvhs
vhkkicylnwlrnwqekkkyqefiylqilvlelv*pmklrvnlk*lg---

---rwcigtkwyr*n*i*rsrth*nyasfrskty*mg*insnwc*cqwfgsiskdh*isn
stkrkrtlgylstnch*ic*ss*ysr*neskgcy*tngtmeigsflll*sykekii*rg*
ikinr*issrfkssikiesignld*tnpw*qsis*lpskr*inffnnrikfsyn***dy*
sfkticyqsnfkfcsirfrinr*wfpksftfyfnstkrifiesxkki*inkkkvii

Frame C:
pnwlcfpssmll*ttkfnwsngfrsctw*fkr*lgrfts*ytlpnygccskk*i*sstfr
ynlll*ls*sl*rgnakhldgiygik*nkscqglsiiswcfrkc*idstiyyqy*fptin
sigsitrre*tkt*rnlssnwlq*ywygslendflys*isir*tghsdc**yhspnwfir
strryvi*igfgigkkrkntknlfifkfwc*nwfsr*n*e*i*snl---

---GGVLEPNGIAEIKYRDPELIKTMHRLDPKLIEWDKSIPIGVSVNGLDQSQKTIKSQI
QQREKELLGIYQQIAIKFADLHDTPGRMKAKGVIKQMVPWKSARSFFYDRIKRRLFEEDK
LKLIDKSHPGLNRQSKLNLLETWIKQILGNNQSVDYHQNDKLISSTIESNSHIINDKIID
LSKQYAINQILNFVQSDSESIVDGFQNLLPFISTQQKEFLLNLXKRFK*ikkk***
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHC671 (VHC671Q) /CSM/VH/VHC6-C/VHC671Q.Seq.d/                       2658   0.0
VHH692 (VHH692Q) /CSM/VH/VHH6-D/VHH692Q.Seq.d/                       1332   0.0
AHL689 (AHL689Q) /CSM/AH/AHL6-D/AHL689Q.Seq.d/                       1332   0.0
AHE662 (AHE662Q) /CSM/AH/AHE6-C/AHE662Q.Seq.d/                       1330   0.0
AHH662 (AHH662Q) /CSM/AH/AHH6-C/AHH662Q.Seq.d/                       1318   0.0
VHI148 (VHI148Q) /CSM/VH/VHI1-B/VHI148Q.Seq.d/                       1289   0.0
CHM280 (CHM280Q) /CSM/CH/CHM2-D/CHM280Q.Seq.d/                       1271   0.0
CFA538 (CFA538Q) /CSM/CF/CFA5-B/CFA538Q.Seq.d/                       1209   0.0
VHC689 (VHC689Q) /CSM/VH/VHC6-D/VHC689Q.Seq.d/                       1086   0.0
CHO882 (CHO882Q) /CSM/CH/CHO8-D/CHO882Q.Seq.d/                         40   0.089
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BD194964|BD194964.1 Candida albicans-origin acetyl-COA-carboxylase.    46   6e-07  3
A94755|A94755.1 Sequence 2 from Patent WO9932635.                  46   6e-07  3
AR322075|AR322075.1 Sequence 2 from patent US 6566048.             46   6e-07  3
DX139197|DX139197.1 OG_ABa0172J05.r OG_ABa Oryza granulata genomic clone OG_ABa0172J05 3', genomic survey sequence.    46   5e-06  2
CB965535|CB965535.1 NL22_G11 Drought stress (leaf) Oryza sativa (indica cultivar-group) cDNA clone NL22_G11 3', mRNA sequence.    44   8e-04  2
CF307235|CF307235.1 HDA1--06-C04.g1 OsHDAC1-overexpressing transgenic rice lambda phage cDNA library I (HDA1) Oryza sativa (japonica cultivar-group) cDNA clone HDA1--06-C04, mRNA sequence.    44   0.001  2
CB680290|CB680290.1 OSJNEf04M11.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA clone OSJNEf04M11 5', mRNA sequence.    44   0.001  2
CB634341|CB634341.1 ---.    44   0.001  2
CL835328|CL835328.1 OR_CBa0059A18.f OR_CBa Oryza rufipogon genomic clone OR_CBa0059A18 5', genomic survey sequence.    44   0.001  2
CT851866|CT851866.1 Oryza sativa (indica cultivar-group) EST sequence:OSIGCPI213H04.    44   0.002  2
dna update 2007. 5. 1
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54J08) RecName: Full=Acetyl-CoA carboxylase;          EC=6.4.1...   468   e-130
BC137287_1(BC137287|pid:none) Homo sapiens acetyl-Coenzyme A car...   180   1e-43
AY315627_1(AY315627|pid:none) Homo sapiens acetyl-CoA carboxylas...   180   1e-43
(Q28559) RecName: Full=Acetyl-CoA carboxylase 1;          EC=6.4...   178   5e-43
AE013599_562(AE013599|pid:none) Drosophila melanogaster chromoso...   177   1e-42
AX463790_1(AX463790|pid:none) Sequence 1 from Patent WO0248321.       177   1e-42
AE013599_563(AE013599|pid:none) Drosophila melanogaster chromoso...   177   1e-42
(P11497) RecName: Full=Acetyl-CoA carboxylase 1;          EC=6.4...   176   2e-42
BC056500_1(BC056500|pid:none) Mus musculus acetyl-Coenzyme A car...   175   3e-42
(Q705X9) RecName: Full=Acetyl-CoA carboxylase 1;          EC=6.4...   175   3e-42
protein update 2009. 6.28
PSORT 

 psg: 0.81  gvh: 0.45  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for VHC671 is cyt
5' end seq. ID VHC671F
5' end seq. 
>VHC671F.Seq
AACCCAACTGGTTATGCTTTCCAAGTTCAATGCTATTATGAACAACAAAATTCAATTGGT
CAAATGGTTTTCGCAGTTGTACCTGGTAGTTCAAAAGGTAGTTGGGAAGGTTTACCAGTT
GATACACCTTACCCAATTATGGATGCTGTTCAAAGAAATAGATTTAAAGCTCAACGTTTA
GATACAACCTATTGTTATGATTATCCTGATCTCTTTAGAGAGGCAATGCAAAACATTTGG
ATGGAATTTATGGAATCAAATAAAACAAATCCTGTCAAGGTTTATCCATCATCTCGTGGT
GTTTTAGAAAGTGTTGAATTGATTCTACCATCTACTATCAATACTGATTTCCCACCATCA
ATTCCATTGGATCAATTACCAGAAGAGAGTAAACCAAAACTTGAAGAAACCTATCGTCCA
ATTGGTTACAATGATATTGGTATGGTAGCTTGGAGAATGACTTTCTATACTCCTGAATAT
CCATTAGGTAGACAGGCCATAGTGATTGCTAATGATATCACTCACCAAATTGGTTCATTC
GGTCCACAAGAAGATATGTTATTTAAATTGGCTTCGGAATTGGCAAGAAAAGAAAAAATA
CCAAGAATTTATTTATCTTCAAATTCTGGTGCTAGAATTGGTTTAGCCGATGAAATTAAG
AGTAAATTTAAAGTAACTTGGANNNNNNNNNN
Length of 5' end seq. 692
3' end seq. ID VHC671Z
3' end seq. 
>VHC671Z.Seq
NNNNNNNNNNGAGGTGGTGTATTGGAACCAAATGGTATCGCTGAAATTAAATATAGAGAT
CCAGAACTCATTAAAACTATGCATCGTTTAGATCCAAAACTTATTGAATGGGATAAATCA
ATTCCAATTGGTGTTAGTGTCAATGGTTTGGATCAATCTCAAAAGACCATTAAATCTCAA
ATTCAACAAAGAGAAAAAGAACTCTTGGGTATTTATCAACAAATTGCCATTAAATTTGCT
GATCTTCATGATACTCCAGGTAGAATGAAAGCAAAGGGTGTTATTAAACAAATGGTACCA
TGGAAATCGGCTCGTTCCTTCTTCTATGATCGTATAAAGAGAAGATTATTTGAAGAGGAT
AAATTAAAATTAATCGATAAATCTCATCCAGGTTTAAATCGTCAATCAAAATTGAATCTA
TTGGAAACTTGGATTAAACAAATCCTTGGTAACAATCAATCAGTTGATTACCATCAAAAC
GATAAATTAATTTCTTCAACAATCGAATCAAATTCTCATATAATTAATGATAAGATTATT
GATCTTTCAAAACAATATGCTATCAATCAAATTTTAAATTTTGTTCAATCAGATTCAGAA
TCAATCGTTGATGGTTTCCAAAATCTTTTACCTTTTATTTCAACTCAACAAAAAGAATTT
TTATTGAATCTTNAAAAAAGATTTAAATAAATAAAAAAAAAGTAATAATAA
Length of 3' end seq. 711
Connected seq. ID VHC671P
Connected seq. 
>VHC671P.Seq
AACCCAACTGGTTATGCTTTCCAAGTTCAATGCTATTATGAACAACAAAATTCAATTGGT
CAAATGGTTTTCGCAGTTGTACCTGGTAGTTCAAAAGGTAGTTGGGAAGGTTTACCAGTT
GATACACCTTACCCAATTATGGATGCTGTTCAAAGAAATAGATTTAAAGCTCAACGTTTA
GATACAACCTATTGTTATGATTATCCTGATCTCTTTAGAGAGGCAATGCAAAACATTTGG
ATGGAATTTATGGAATCAAATAAAACAAATCCTGTCAAGGTTTATCCATCATCTCGTGGT
GTTTTAGAAAGTGTTGAATTGATTCTACCATCTACTATCAATACTGATTTCCCACCATCA
ATTCCATTGGATCAATTACCAGAAGAGAGTAAACCAAAACTTGAAGAAACCTATCGTCCA
ATTGGTTACAATGATATTGGTATGGTAGCTTGGAGAATGACTTTCTATACTCCTGAATAT
CCATTAGGTAGACAGGCCATAGTGATTGCTAATGATATCACTCACCAAATTGGTTCATTC
GGTCCACAAGAAGATATGTTATTTAAATTGGCTTCGGAATTGGCAAGAAAAGAAAAAATA
CCAAGAATTTATTTATCTTCAAATTCTGGTGCTAGAATTGGTTTAGCCGATGAAATTAAG
AGTAAATTTAAAGTAACTTGGA----------GAGGTGGTGTATTGGAACCAAATGGTAT
CGCTGAAATTAAATATAGAGATCCAGAACTCATTAAAACTATGCATCGTTTAGATCCAAA
ACTTATTGAATGGGATAAATCAATTCCAATTGGTGTTAGTGTCAATGGTTTGGATCAATC
TCAAAAGACCATTAAATCTCAAATTCAACAAAGAGAAAAAGAACTCTTGGGTATTTATCA
ACAAATTGCCATTAAATTTGCTGATCTTCATGATACTCCAGGTAGAATGAAAGCAAAGGG
TGTTATTAAACAAATGGTACCATGGAAATCGGCTCGTTCCTTCTTCTATGATCGTATAAA
GAGAAGATTATTTGAAGAGGATAAATTAAAATTAATCGATAAATCTCATCCAGGTTTAAA
TCGTCAATCAAAATTGAATCTATTGGAAACTTGGATTAAACAAATCCTTGGTAACAATCA
ATCAGTTGATTACCATCAAAACGATAAATTAATTTCTTCAACAATCGAATCAAATTCTCA
TATAATTAATGATAAGATTATTGATCTTTCAAAACAATATGCTATCAATCAAATTTTAAA
TTTTGTTCAATCAGATTCAGAATCAATCGTTGATGGTTTCCAAAATCTTTTACCTTTTAT
TTCAACTCAACAAAAAGAATTTTTATTGAATCTTNAAAAAAGATTTAAATAAATAAAAAA
AAAGTAATAATAA
Length of connected seq. 1383
Full length Seq ID -
Full length Seq. -
Length of full length seq. -