VHC649
Library VH
(Link to library)
Clone ID VHC649
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12327-1
Original site URL
Representative seq. ID VHC649P
(Link to Original site)
Representative DNA sequence
>VHC649 (VHC649Q) /CSM/VH/VHC6-C/VHC649Q.Seq.d/
AATTCAATCAAGTAATACAGTTGAGATTTTAATTGATGTTGTCGATGGTCAATTTAGAGA
AGGTTATTTAGTTGGTCCATCAAGAATTGTTTCATACAATGAATCAAATGTAAAATCTTT
ATTCTTTGATACAAACATTGATACTAAACATAATCAACTTCAAGTTAAATTTAAGAATCA
TAGCCCTTCAACTAGAGTTCACGTTTTTTCAAGTTACTTTGAACCAACAAATTCTTTAAA
TTCAAGTTTATCTTTATCACGTGGTACTTCTCAATCTTATCAAGAATATAGCGTTAAACC
AAAATCATTATATTTCAATGGTAGATCATTAGGTGATGAAGTTAATTACATTTTAAATAG
AAAAACTAGTAAAAAACTATTACCTGGTAATTCATTAAAGAAACCAAGTCTATTGGTTCA
ACCATGGTCAATTGGTAAAACTACAAACTCTACAAACACACTCAAACAAGCAAGTAAATA
CAATGAATCTGAAGTAAAGGATGAAAAATCAATGAGAAATAGACAAGTTGAAAAGAGAAG
AGTTTCTTCAACAAATCGTTCACCATTTTTAGAGTTXXXXXXXXXXTAAATTCCCACATT
TCCCTGCTCACGTTTCAGAGAAACAAAATATTATTGCCAATGTTACACCATTCACCTTTA
GTGTAGTTTTAAAACCATCTATTGTCAATCATTTATCATGGGAATACATTGCAAATCAAG
GTACATTGGAATCAATCTTGGAATATTTATCAAAGAACAATTTGTATCGTGTTGATTTCT
ATCATCTCTATCATAGATATACCGATAAGAAAGTTTGGGATAAAGTAATTGAACTCTTAA
AGAAATTGAAATTCTATGAATCTATCACTTGGTCATTCTCTATTCATCATAAGAATTTCG
TTTACTTGAAAGATTACCTCTCTGAACAAATTCATTCCTTATCAATGAAATCAATCGATG
CACCATCCATTTATGTTGATCCATTTGAAAATAACTTCATCAAATTCTTGGAATACTCTC
CATTGGTTAATTCAAGAACTCATCAAATTGGTGATGAAAGAAAGATTCTTAATAATAAAT
TATCAAATCAATATTATGAATTCTGTAGTTTACTTTCATTGAAATTAAATCCATCCGATA
CTGAATTACTTTCTTTAGCTTATTATTTATTACTTCAAGATAGATTTGATGAATCAATTA
AAATTATGAAGAGAATTGGTAAACATCCAGTTTCAATTCCAAAATTAATTTCTTCTTCAA
CCACTACTGATTCAAAATCAACTCATTCATCAGTAATTTCTTCTTCTTCCTCTTCAAATT
TATCAACCACTACTGATAGTTCAAAAGATAAAAAGAAACTNAAAAAGAAGAAAAACAAAG
A
sequence update 2002.10.25
Translated Amino Acid sequence
IQSSNTVEILIDVVDGQFREGYLVGPSRIVSYNESNVKSLFFDTNIDTKHNQLQVKFKNH
SPSTRVHVFSSYFEPTNSLNSSLSLSRGTSQSYQEYSVKPKSLYFNGRSLGDEVNYILNR
KTSKKLLPGNSLKKPSLLVQPWSIGKTTNSTNTLKQASKYNESEVKDEKSMRNRQVEKRR
VSSTNRSPFLE---

---KFPHFPAHVSEKQNIIANVTPFTFSVVLKPSIVNHLSWEYIANQGTLESILEYLSKN
NLYRVDFYHLYHRYTDKKVWDKVIELLKKLKFYESITWSFSIHHKNFVYLKDYLSEQIHS
LSMKSIDAPSIYVDPFENNFIKFLEYSPLVNSRTHQIGDERKILNNKLSNQYYEFCSLLS
LKLNPSDTELLSLAYYLLLQDRFDESIKIMKRIGKHPVSIPKLISSSTTTDSKSTHSSVI
SSSSSSNLSTTTDSSKDKKKLKKKKNK


Translated Amino Acid sequence (All Frames)
Frame A:
nsik*ys*dfn*ccrwsi*rrlfswsikncfiq*ikckifil*ykh*y*t*stss*i*es
*pfn*ssrffkll*tnkffkfkfifitwyfsilsri*r*tkiiifqw*iir**s*lhfk*
kn**ktitw*fiketksigstmvnw*nyklykhtqtsk*iq*i*skg*kinek*ts*kek
sffnksftifrv---

---*iptfpcsrfretkyycqcytihl*csfktiycqsfimgihcksryiginlgifike
qfvsc*flssls*iyr*eslg*sn*tlkeieil*iyhlvilyss*efrllerlpl*tnsf
lineinrctihlc*si*k*lhqilgilsig*fknssnw**kkds***iiksil*il*ftf
ieiksiry*itffsllfitsr*i**in*nyeenw*tssfnskinfffnhy*fkinsfisn
fffflfkfinhy**fkr*ketxkeekqr

Frame B:
IQSSNTVEILIDVVDGQFREGYLVGPSRIVSYNESNVKSLFFDTNIDTKHNQLQVKFKNH
SPSTRVHVFSSYFEPTNSLNSSLSLSRGTSQSYQEYSVKPKSLYFNGRSLGDEVNYILNR
KTSKKLLPGNSLKKPSLLVQPWSIGKTTNSTNTLKQASKYNESEVKDEKSMRNRQVEKRR
VSSTNRSPFLE---

---KFPHFPAHVSEKQNIIANVTPFTFSVVLKPSIVNHLSWEYIANQGTLESILEYLSKN
NLYRVDFYHLYHRYTDKKVWDKVIELLKKLKFYESITWSFSIHHKNFVYLKDYLSEQIHS
LSMKSIDAPSIYVDPFENNFIKFLEYSPLVNSRTHQIGDERKILNNKLSNQYYEFCSLLS
LKLNPSDTELLSLAYYLLLQDRFDESIKIMKRIGKHPVSIPKLISSSTTTDSKSTHSSVI
SSSSSSNLSTTTDSSKDKKKLKKKKNK

Frame C:
fnqviqlrf*lmlsmvnlekvi*lvhqelfhtmnqm*nlysliqtlilniinfklnlrii
alqleftffqvtlnqqil*iqvylyhvvllnliknialnqnhyismvdh*vmklitf*ie
klvknyylvih*rnqvywfnhgqlvklqtlqthsnkqvntmnlk*rmknq*eidklkree
flqqivhhf*s---

---nshislltfqrnkillpmlhhsplv*f*nhllsiiyhgntlqikvhwnqswniyqrt
icivlisiisiidipirkfgik*lns*rn*nsmnlslghslfiirisft*kitslnkfip
yq*nqsmhhpfmlihlkitssnswntlhwliqeliklvmkerfliinyqinimnsvvyfh
*n*ihpilnyfl*liiyyfkidlmnqlkl*relvniqfqfqn*fllqplliqnqlihq*f
lllplqiyqpllivqkikrnxkrrktk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHC649 (VHC649Q) /CSM/VH/VHC6-C/VHC649Q.Seq.d/ 2601 0.0
VHB392 (VHB392Q) /CSM/VH/VHB3-D/VHB392Q.Seq.d/ 1483 0.0
VHA602 (VHA602Q) /CSM/VH/VHA6-A/VHA602Q.Seq.d/ 1477 0.0
VHI335 (VHI335Q) /CSM/VH/VHI3-B/VHI335Q.Seq.d/ 1475 0.0
CHG769 (CHG769Q) /CSM/CH/CHG7-C/CHG769Q.Seq.d/ 1467 0.0
VHP670 (VHP670Q) /CSM/VH/VHP6-C/VHP670Q.Seq.d/ 1417 0.0
VHP284 (VHP284Q) /CSM/VH/VHP2-D/VHP284Q.Seq.d/ 1302 0.0
VHC626 (VHC626Q) /CSM/VH/VHC6-B/VHC626Q.Seq.d/ 1302 0.0
VHN485 (VHN485Q) /CSM/VH/VHN4-D/VHN485Q.Seq.d/ 1298 0.0
VHH672 (VHH672Q) /CSM/VH/VHH6-C/VHH672Q.Seq.d/ 1296 0.0

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BG226304|BG226304.1 kq20a02.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5', mRNAsequence. 44 0.009 2
ES222874|ES222874.1 MpHnorm_ag1_G13 Myzus persicae, tobacco lineage, aphid head normalized library Myzus persicae cDNA clone MpHnorm_ag1_G13, mRNA sequence. 52 0.043 1
ES220333|ES220333.1 MpGnorm_ag6_F06 Myzus persicae, tobacco lineage, aphid digestive tract normalized library Myzus persicae cDNA clone MpGnorm_ag6_F06, mRNA sequence. 52 0.043 1
ES217936|ES217936.1 MpFVN_ag2_E24 Myzus persicae, line F001, PLRV free, whole female aphid library Myzus persicae cDNA clone MpFVN_ag2_E24, mRNA sequence. 52 0.043 1
ES222874|ES222874.1 MpHnorm_ag1_G13 Myzus persicae, tobacco lineage, aphid head normalized library Myzus persicae cDNA clone MpHnorm_ag1_G13, mRNA sequence. 52 0.043 1
ES220333|ES220333.1 MpGnorm_ag6_F06 Myzus persicae, tobacco lineage, aphid digestive tract normalized library Myzus persicae cDNA clone MpGnorm_ag6_F06, mRNA sequence. 52 0.043 1
ES217936|ES217936.1 MpFVN_ag2_E24 Myzus persicae, line F001, PLRV free, whole female aphid library Myzus persicae cDNA clone MpFVN_ag2_E24, mRNA sequence. 52 0.043 1
DW014230|DW014230.1 w7l15_M13F Myzus persicae, tobacco lineage, whole aphid library Myzus persicae cDNA clone w7l15_M13F, mRNA sequence. 52 0.043 1
DW013855|DW013855.1 w6j1_M13F Myzus persicae, tobacco lineage, whole aphid library Myzus persicae cDNA clone w6j1_M13F, mRNA sequence. 52 0.043 1
DW013658|DW013658.1 w6a21_M13F Myzus persicae, tobacco lineage, whole aphid library Myzus persicae cDNA clone w6a21_M13F, mRNA sequence. 52 0.043 1
dna update 2007. 5. 1
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CP000685_1285(CP000685|pid:none) Flavobacterium johnsoniae UW101... 40 0.20
AL844507_40(AL844507|pid:none) Plasmodium falciparum 3D7 chromos... 38 0.98
CP000551_1069(CP000551|pid:none) Prochlorococcus marinus str. AS... 37 2.2
AL844506_148(AL844506|pid:none) Plasmodium falciparum 3D7 chromo... 37 2.2
AL935258_170(AL935258|pid:none) Lactobacillus plantarum strain W... 36 2.9
AL844507_89(AL844507|pid:none) Plasmodium falciparum 3D7 chromos... 36 2.9
CP000111_1067(CP000111|pid:none) Prochlorococcus marinus str. MI... 36 3.7
CP000084_162(CP000084|pid:none) Candidatus Pelagibacter ubique H... 36 3.7
CP000409_33(CP000409|pid:none) Rickettsia canadensis str. McKiel... 35 4.9
AY740026_3(AY740026|pid:none) Saccharomyces kudriavzevii IFO 180... 35 6.4
protein update 2009. 6.28
PSORT

psg: 0.75 gvh: 0.40 alm: 0.43 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.00
nuc: 0.04 erl: 0.00 erm: 0.60 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
36.0 %: cytoplasmic
8.0 %: vacuolar
8.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for VHC649 is nuc

5' end seq. ID VHC649F
5' end seq.
>VHC649F.Seq
AATTCAATCAAGTAATACAGTTGAGATTTTAATTGATGTTGTCGATGGTCAATTTAGAGA
AGGTTATTTAGTTGGTCCATCAAGAATTGTTTCATACAATGAATCAAATGTAAAATCTTT
ATTCTTTGATACAAACATTGATACTAAACATAATCAACTTCAAGTTAAATTTAAGAATCA
TAGCCCTTCAACTAGAGTTCACGTTTTTTCAAGTTACTTTGAACCAACAAATTCTTTAAA
TTCAAGTTTATCTTTATCACGTGGTACTTCTCAATCTTATCAAGAATATAGCGTTAAACC
AAAATCATTATATTTCAATGGTAGATCATTAGGTGATGAAGTTAATTACATTTTAAATAG
AAAAACTAGTAAAAAACTATTACCTGGTAATTCATTAAAGAAACCAAGTCTATTGGTTCA
ACCATGGTCAATTGGTAAAACTACAAACTCTACAAACACACTCAAACAAGCAAGTAAATA
CAATGAATCTGAAGTAAAGGATGAAAAATCAATGAGAAATAGACAAGTTGAAAAGAGAAG
AGTTTCTTCAACAAATCGTTCACCATTTTTAGAGTTNNNNNNNNNN
Length of 5' end seq. 586
3' end seq. ID VHC649Z
3' end seq.
>VHC649Z.Seq
NNNNNNNNNNTAAATTCCCACATTTCCCTGCTCACGTTTCAGAGAAACAAAATATTATTG
CCAATGTTACACCATTCACCTTTAGTGTAGTTTTAAAACCATCTATTGTCAATCATTTAT
CATGGGAATACATTGCAAATCAAGGTACATTGGAATCAATCTTGGAATATTTATCAAAGA
ACAATTTGTATCGTGTTGATTTCTATCATCTCTATCATAGATATACCGATAAGAAAGTTT
GGGATAAAGTAATTGAACTCTTAAAGAAATTGAAATTCTATGAATCTATCACTTGGTCAT
TCTCTATTCATCATAAGAATTTCGTTTACTTGAAAGATTACCTCTCTGAACAAATTCATT
CCTTATCAATGAAATCAATCGATGCACCATCCATTTATGTTGATCCATTTGAAAATAACT
TCATCAAATTCTTGGAATACTCTCCATTGGTTAATTCAAGAACTCATCAAATTGGTGATG
AAAGAAAGATTCTTAATAATAAATTATCAAATCAATATTATGAATTCTGTAGTTTACTTT
CATTGAAATTAAATCCATCCGATACTGAATTACTTTCTTTAGCTTATTATTTATTACTTC
AAGATAGATTTGATGAATCAATTAAAATTATGAAGAGAATTGGTAAACATCCAGTTTCAA
TTCCAAAATTAATTTCTTCTTCAACCACTACTGATTCAAAATCAACTCATTCATCAGTAA
TTTCTTCTTCTTCCTCTTCAAATTTATCAACCACTACTGATAGTTCAAAAGATAAAAAGA
AACTNAAAAAGAAGAAAAACAAAGA
Length of 3' end seq. 805
Connected seq. ID VHC649P
Connected seq.
>VHC649P.Seq
AATTCAATCAAGTAATACAGTTGAGATTTTAATTGATGTTGTCGATGGTCAATTTAGAGA
AGGTTATTTAGTTGGTCCATCAAGAATTGTTTCATACAATGAATCAAATGTAAAATCTTT
ATTCTTTGATACAAACATTGATACTAAACATAATCAACTTCAAGTTAAATTTAAGAATCA
TAGCCCTTCAACTAGAGTTCACGTTTTTTCAAGTTACTTTGAACCAACAAATTCTTTAAA
TTCAAGTTTATCTTTATCACGTGGTACTTCTCAATCTTATCAAGAATATAGCGTTAAACC
AAAATCATTATATTTCAATGGTAGATCATTAGGTGATGAAGTTAATTACATTTTAAATAG
AAAAACTAGTAAAAAACTATTACCTGGTAATTCATTAAAGAAACCAAGTCTATTGGTTCA
ACCATGGTCAATTGGTAAAACTACAAACTCTACAAACACACTCAAACAAGCAAGTAAATA
CAATGAATCTGAAGTAAAGGATGAAAAATCAATGAGAAATAGACAAGTTGAAAAGAGAAG
AGTTTCTTCAACAAATCGTTCACCATTTTTAGAGTT----------TAAATTCCCACATT
TCCCTGCTCACGTTTCAGAGAAACAAAATATTATTGCCAATGTTACACCATTCACCTTTA
GTGTAGTTTTAAAACCATCTATTGTCAATCATTTATCATGGGAATACATTGCAAATCAAG
GTACATTGGAATCAATCTTGGAATATTTATCAAAGAACAATTTGTATCGTGTTGATTTCT
ATCATCTCTATCATAGATATACCGATAAGAAAGTTTGGGATAAAGTAATTGAACTCTTAA
AGAAATTGAAATTCTATGAATCTATCACTTGGTCATTCTCTATTCATCATAAGAATTTCG
TTTACTTGAAAGATTACCTCTCTGAACAAATTCATTCCTTATCAATGAAATCAATCGATG
CACCATCCATTTATGTTGATCCATTTGAAAATAACTTCATCAAATTCTTGGAATACTCTC
CATTGGTTAATTCAAGAACTCATCAAATTGGTGATGAAAGAAAGATTCTTAATAATAAAT
TATCAAATCAATATTATGAATTCTGTAGTTTACTTTCATTGAAATTAAATCCATCCGATA
CTGAATTACTTTCTTTAGCTTATTATTTATTACTTCAAGATAGATTTGATGAATCAATTA
AAATTATGAAGAGAATTGGTAAACATCCAGTTTCAATTCCAAAATTAATTTCTTCTTCAA
CCACTACTGATTCAAAATCAACTCATTCATCAGTAATTTCTTCTTCTTCCTCTTCAAATT
TATCAACCACTACTGATAGTTCAAAAGATAAAAAGAAACTNAAAAAGAAGAAAAACAAAG
A
Length of connected seq. 1371
Full length Seq ID -
Full length Seq. -
Length of full length seq. -