AFB605 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

AFB605
Library	AF (Link to library)
Clone ID	AFB605 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U15510-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/AF/AFB6-A/AFB605Q.Seq.d/
Representative seq. ID	AFB605P (Link to Original site)
Representative DNA sequence	>AFB605 (AFB605Q) /CSM/AF/AFB6-A/AFB605Q.Seq.d/ AGAAAAACTAATAATATATTTAAGATGTCTGAAAATTNATCACCAAAATTAGAATNAACA TCAGCAGCAGCAGCAAGTACAAAAAAACCATTCCCAGAATGGATTAAACCTAAAGGCAAA GAAACTGAATTATTAATTAATAATAGTTTAACAGGTGGTAAAGTACCATTCGTTTTCAAT GAAAGTGGTAAAGGTAGATCATTAACATGGTATGCTTGTGGTCCAACAGTTTATGATGCA TCACATATGGGTCATGCTAGAACTTATATTAGTTTTGATATCATTAGACGTATTATGAAA AATTATCTTGGTTTCAATATCCAATATGTTATGAACATTACCGATATTGATGATAAAATC ATTATTCGTGCAAATGAAAATGGTATTTCACATAGTGATCTTTCAAAAAAATGGGAGACT GCTTTCTTTGAAGATATGAAATTATTAAATGTATTACCACCAGATGCATTAACAAGAGTT ACAGAATATGTACCACAAATTGTTGAATATGTTGAAAAGATXXXXXXXXXXGGACTCAAG CTGAAAAGGATTTAAATAAACATCTTCAAAATGCAAATGACCAAGTTCATCAATTCATTC TTGATANCTTTAACACCTCTGACGCTTTGAAAACTTTATCAGATCTCGTCAATAAAACAA ATGTTTACATTAGATCATGTGCTGAACAAAAGACAAATCCAAGATTAAATTTAATTAGTG CAATCGCAGAGTATATCACTTACATTTTCTCTGTTTTCGGTTTAACCGAATCTTCAACCG CCTCTTCAATGATTGGTTTCGGTTCCGCTGGTAAAGGTAATATCGAAGAGGAGATGACTC CAATCTTAAATGCTCTCACTCAATTCCGTTCAGAGGTACGTGCTTCTGCAATCGCAAAAG ATACTACCTCAATCCTTAAAACTTGTGATAACCTTCGTGATGAGGTTTTACCATTATTGG GCGTAAAGATTGATGATAAATCCGCAACAACTGCAATGTGGAAATTTGAAGATAAAGAAA CCCTCAAAAAAGAAATTGAACAAAAGAAAGAAATTGAAAAGAAGAAACAAGCTGACAAGG AAGAAAAAGAAAAAAAATTAAAAGAGAAATTNAAAAATCAAAAATTCCACCACAACAACT CTTTATCAATNAAACGATAAATACTCAAAATTCAATAATTGGGTANGCCAACTCANATAA GGA
sequence update	2001. 6. 1
Translated Amino Acid sequence	RKTNNIFKMSENXSPKLEXTSAAAASTKKPFPEWIKPKGKETELLINNSLTGGKVPFVFN ESGKGRSLTWYACGPTVYDASHMGHARTYISFDIIRRIMKNYLGFNIQYVMNITDIDDKI IIRANENGISHSDLSKKWETAFFEDMKLLNVLPPDALTRVTEYVPQIVEYVEK--- ---TQAEKDLNKHLQNANDQVHQFILDXFNTSDALKTLSDLVNKTNVYIRSCAEQKTNPR LNLISAIAEYITYIFSVFGLTESSTASSMIGFGSAGKGNIEEEMTPILNALTQFRSEVRA SAIAKDTTSILKTCDNLRDEVLPLLGVKIDDKSATTAMWKFEDKETLKKEIEQKKEIEKK KQADKEEKEKKLKEKXKNQKFHHNNSLSXKRilkiqlgxptxir
Translated Amino Acid sequence (All Frames)	Frame A: RKTNNIFKMSENXSPKLEXTSAAAASTKKPFPEWIKPKGKETELLINNSLTGGKVPFVFN ESGKGRSLTWYACGPTVYDASHMGHARTYISFDIIRRIMKNYLGFNIQYVMNITDIDDKI IIRANENGISHSDLSKKWETAFFEDMKLLNVLPPDALTRVTEYVPQIVEYVEK--- ---glklkriinifkmqmtkfinsflixltpltlklyqissikqmftldhvlnkrqiq dilvqsqsisltfslfsvpnlqpplqlvsvplvkviskrrlqsmlslnsvqryv llqsqkilpqslklvitfvmrfyhywarlminpqqlqcgnlkikkpskkklnkrkklkr rnkltrkkkkknkrnxkiknsttttlyqxndkyskfnnwvxqlxg Frame B: ekliiylrclkixhqnnxhqqqqqvqknhsqnglnlkakklnyliivqvvkyhsfsm kvvkvdhhgmlvvqqfmmhhiwvmlelilvlisldvlkiilvsisnmltlpilmiks lfvqmkmvfhivifqkngrllslkinymyyhqmhqelqnmyhkllnmlkr--- ---dsskgfktsskckpsssihsxlhlrfenfirsrqnkclhimctkdksk ikfncnrrvyhlhflcfrfnrifnrlfndwfrfrwryrrgddsnlkcshsipfrgtc fcnrkryylnpnlpsgftiigrkd*irnncnveirrnpqkrntkernke etsqgrkrkkikreixkskippqqlfinxtintqnsiigxansxk Frame C: kn*yidvkxitkirxnisssskykktiprmdtrqrniin**fnrwstirfq* kwriinmvclwsnslcitygscnlyfyhtyyeklswfqypicyehyry*nh ysckkwyft*sfkkmgdcflryeiikcittrcinksyricttncickd--- ---TQAEKDLNKHLQNANDQVHQFILDXFNTSDALKTLSDLVNKTNVYIRSCAEQKTNPR LNLISAIAEYITYIFSVFGLTESSTASSMIGFGSAGKGNIEEEMTPILNALTQFRSEVRA SAIAKDTTSILKTCDNLRDEVLPLLGVKIDDKSATTAMWKFEDKETLKKEIEQKKEIEKK KQADKEEKEKKLKEKXKNQKFHHNNSLSXKRilkiqlgxptxir
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value AFB605 (AFB605Q) /CSM/AF/AFB6-A/AFB605Q.Seq.d/ 1850 0.0 SFI454 (SFI454Q) /CSM/SF/SFI4-C/SFI454Q.Seq.d/ 952 0.0 CHD303 (CHD303Q) /CSM/CH/CHD3-A/CHD303Q.Seq.d/ 952 0.0 AFO629 (AFO629Q) /CSM/AF/AFO6-B/AFO629Q.Seq.d/ 952 0.0 AFF277 (AFF277Q) /CSM/AF/AFF2-D/AFF277Q.Seq.d/ 952 0.0 AFC514 (AFC514Q) /CSM/AF/AFC5-A/AFC514Q.Seq.d/ 952 0.0 SFH371 (SFH371Q) /CSM/SF/SFH3-C/SFH371Q.Seq.d/ 944 0.0 VHK226 (VHK226Q) /CSM/VH/VHK2-B/VHK226Q.Seq.d/ 938 0.0 VHC506 (VHC506Q) /CSM/VH/VHC5-A/VHC506Q.Seq.d/ 938 0.0 SFK844 (SFK844Q) /CSM/SF/SFK8-B/SFK844Q.Seq.d/ 938 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AQ449880\|AQ449880.1 500005E02.x1 CpIOWAM13mp18gDNA1 Cryptosporidium parvum genomic similar to cysteinyl-tRNA synthetase, DNA sequence. 66 1e-06 1 AE014831\|AE014831.1 Plasmodium falciparum 3D7 chromosome 10 section 3 of 7 of the complete sequence. 60 3e-06 9 AI980689\|AI980689.1 pat.pk0031.a6.f chicken activated T cell cDNA Gallus gallus cDNA clone pat.pk0031.a6.f 5' similar to cysteinyl-tRNA synthetase, mRNA sequence. 42 4e-05 2 AJ454860\|AJ454860.1 Gallus gallus EST, clone library riken1, clone 3o5r1. 42 2e-04 2 AC116977\|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence. 36 0.011 10 BW037621\|BW037621.1 Ciona intestinalis cDNA, clone:cibd034e13, 5' end, single read. 46 0.020 2 AV951816\|AV951816.1 Ciona intestinalis cDNA, clone:cieg06f21, 5' end, single read. 46 0.025 2 AV973749\|AV973749.1 Ciona intestinalis cDNA, clone:cieg32i22, 5' end, single read. 46 0.025 2 BW201106\|BW201106.1 Ciona intestinalis cDNA, clone:cicl076p06, 5' end, single read. 46 0.026 2 BW037294\|BW037294.1 Ciona intestinalis cDNA, clone:cibd033e13, 5' end, single read. 46 0.026 2
dna update	2003. 7.23
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AE014185_147(AE014185\|pid:none) Plasmodium falciparum 3D7 chromo... 169 1e-40 BX538350_42(BX538350\|pid:none) Cryptosporidium parvum chromosome... 155 2e-36 AL590448_49(AL590448\|pid:none) chromosome VIII of strain GB-M1 o... 146 2e-33 BC166536_1(BC166536\|pid:none) Rattus norvegicus similar to hypot... 145 3e-33 BC007220_1(BC007220\|pid:none) Homo sapiens cysteinyl-tRNA synthe... 144 8e-33 (Q9HA77) RecName: Full=Probable cysteinyl-tRNA synthetase, mitoc... 144 8e-33 (Q8BYM8) RecName: Full=Probable cysteinyl-tRNA synthetase, mitoc... 142 2e-32 AK021302_1(AK021302\|pid:none) Mus musculus 13 days embryo stomac... 142 2e-32 AK009937_1(AK009937\|pid:none) Mus musculus adult male tongue cDN... 142 2e-32 AK041962_1(AK041962\|pid:none) Mus musculus 3 days neonate thymus... 142 2e-32
protein update	2009. 3.27
PSORT	psg: 0.56 gvh: 0.37 alm: 0.36 top: 0.53 tms: 0.00 mit: 0.29 mip: 0.00 nuc: 0.06 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 56.0 %: cytoplasmic 24.0 %: nuclear 12.0 %: mitochondrial 4.0 %: cytoskeletal 4.0 %: peroxisomal >> prediction for AFB605 is cyt
5' end seq. ID	AFB605F
5' end seq.	>AFB605F.Seq AGAAAAACTAATAATATATTTAAGATGTCTGAAAATTNATCACCAAAATTAGAATNAACA TCAGCAGCAGCAGCAAGTACAAAAAAACCATTCCCAGAATGGATTAAACCTAAAGGCAAA GAAACTGAATTATTAATTAATAATAGTTTAACAGGTGGTAAAGTACCATTCGTTTTCAAT GAAAGTGGTAAAGGTAGATCATTAACATGGTATGCTTGTGGTCCAACAGTTTATGATGCA TCACATATGGGTCATGCTAGAACTTATATTAGTTTTGATATCATTAGACGTATTATGAAA AATTATCTTGGTTTCAATATCCAATATGTTATGAACATTACCGATATTGATGATAAAATC ATTATTCGTGCAAATGAAAATGGTATTTCACATAGTGATCTTTCAAAAAAATGGGAGACT GCTTTCTTTGAAGATATGAAATTATTAAATGTATTACCACCAGATGCATTAACAAGAGTT ACAGAATATGTACCACAAATTGTTGAATATGTTGAAAAGAT----------
Length of 5' end seq.	521
3' end seq. ID	AFB605Z
3' end seq.	>AFB605Z.Seq ----------GGACTCAAGCTGAAAAGGATTTAAATAAACATCTTCAAAATGCAAATGAC CAAGTTCATCAATTCATTCTTGATANCTTTAACACCTCTGACGCTTTGAAAACTTTATCA GATCTCGTCAATAAAACAAATGTTTACATTAGATCATGTGCTGAACAAAAGACAAATCCA AGATTAAATTTAATTAGTGCAATCGCAGAGTATATCACTTACATTTTCTCTGTTTTCGGT TTAACCGAATCTTCAACCGCCTCTTCAATGATTGGTTTCGGTTCCGCTGGTAAAGGTAAT ATCGAAGAGGAGATGACTCCAATCTTAAATGCTCTCACTCAATTCCGTTCAGAGGTACGT GCTTCTGCAATCGCAAAAGATACTACCTCAATCCTTAAAACTTGTGATAACCTTCGTGAT GAGGTTTTACCATTATTGGGCGTAAAGATTGATGATAAATCCGCAACAACTGCAATGTGG AAATTTGAAGATAAAGAAACCCTCAAAAAAGAAATTGAACAAAAGAAAGAAATTGAAAAG AAGAAACAAGCTGACAAGGAAGAAAAAGAAAAAAAATTAAAAGAGAAATTNAAAAATCAA AAATTCCACCACAACAACTCTTTATCAATNAAACGATAAATACTCAAAATTCAATAATTG GGTANGCCAACTCANATAAGGA
Length of 3' end seq.	672
Connected seq. ID	AFB605P
Connected seq.	>AFB605P.Seq AGAAAAACTAATAATATATTTAAGATGTCTGAAAATTNATCACCAAAATTAGAATNAACA TCAGCAGCAGCAGCAAGTACAAAAAAACCATTCCCAGAATGGATTAAACCTAAAGGCAAA GAAACTGAATTATTAATTAATAATAGTTTAACAGGTGGTAAAGTACCATTCGTTTTCAAT GAAAGTGGTAAAGGTAGATCATTAACATGGTATGCTTGTGGTCCAACAGTTTATGATGCA TCACATATGGGTCATGCTAGAACTTATATTAGTTTTGATATCATTAGACGTATTATGAAA AATTATCTTGGTTTCAATATCCAATATGTTATGAACATTACCGATATTGATGATAAAATC ATTATTCGTGCAAATGAAAATGGTATTTCACATAGTGATCTTTCAAAAAAATGGGAGACT GCTTTCTTTGAAGATATGAAATTATTAAATGTATTACCACCAGATGCATTAACAAGAGTT ACAGAATATGTACCACAAATTGTTGAATATGTTGAAAAGAT----------GGACTCAAG CTGAAAAGGATTTAAATAAACATCTTCAAAATGCAAATGACCAAGTTCATCAATTCATTC TTGATANCTTTAACACCTCTGACGCTTTGAAAACTTTATCAGATCTCGTCAATAAAACAA ATGTTTACATTAGATCATGTGCTGAACAAAAGACAAATCCAAGATTAAATTTAATTAGTG CAATCGCAGAGTATATCACTTACATTTTCTCTGTTTTCGGTTTAACCGAATCTTCAACCG CCTCTTCAATGATTGGTTTCGGTTCCGCTGGTAAAGGTAATATCGAAGAGGAGATGACTC CAATCTTAAATGCTCTCACTCAATTCCGTTCAGAGGTACGTGCTTCTGCAATCGCAAAAG ATACTACCTCAATCCTTAAAACTTGTGATAACCTTCGTGATGAGGTTTTACCATTATTGG GCGTAAAGATTGATGATAAATCCGCAACAACTGCAATGTGGAAATTTGAAGATAAAGAAA CCCTCAAAAAAGAAATTGAACAAAAGAAAGAAATTGAAAAGAAGAAACAAGCTGACAAGG AAGAAAAAGAAAAAAAATTAAAAGAGAAATTNAAAAATCAAAAATTCCACCACAACAACT CTTTATCAATNAAACGATAAATACTCAAAATTCAATAATTGGGTANGCCAACTCANATAA GGA
Length of connected seq.	1193
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas