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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHC609
Library VH
(Link to library)
Clone ID VHC609
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12373-1
Original site URL
Representative seq. ID VHC609P
(Link to Original site)
Representative DNA sequence 
>VHC609 (VHC609Q) /CSM/VH/VHC6-A/VHC609Q.Seq.d/
CACTGTTGGCTCTACTGGTATATAAAGTAGATGCAACTGGTAAAGCAATTGCCTTGGATT
TCTATTATCAATTTACAACCGTTGAGAATACACCAGCAAAATTATTAGATTGTACTTCAT
CTGTTGAGAATAAATATGTTTGTAGTATGGTTTCAGGTTATGGTTATTTCAATATTTATG
CAATTAGTGATGGTACAATTAAAACTAATGTAATTAGTGGTTTACAATATGTTTCACCAA
TTGTTGGTAATGTTTCATCCATTTATTATCAAGAACCTGGTATTGTTAAAGTTAATGTTT
CAAATATTGCAACTGGTCAAACTAAAATTANTATTGGTGGTGATGATTGNTCAAGTGTTA
CAATTATCGAXXXXXXXXXXAAAGATCAAATATTTCATCAAATTATTTCTATTATAAAGG
TACATTCAAAAATGATTCAGCAATATTTGAATTGGTTATTAAATATTTCCAAAATGCCGA
TACAATTACATTTGCAGGTGAACAATTAGATATGCCTGATAACTCTATCAAATATCAAGT
TACCATTTCAAATTGGGATTTCGCAAGTGAAACTAATAATTTACAAGCAGTCTATTACTC
TAAAACCGGTTTAGTAACAAAACATAAATGTGATGAAATAGTTTCATCATCAATAGTTGG
TACCAATGATTATCAAATTAATACTGGCGAAGCAGAGTTTAATGCTAAATTTGCAAGTAA
AGTAATTGTAGATAAAAACCTTTATTCCTCAACATATATTACTGCACTTCAATCAGATGA
TCCACTTTATAATGATATTGGTTCAAATGTAGATTCCGACTATAGTTTATTAACTGCAAT
TATGACTCCATATTTCCGTAAACAAGTTGAATTAGATCCACTCTTTTCAAGTTTAATTAA
AACAAGTGAAAAAGTTTCAGAATGTGAAACAACTGAAAAATGGAAAATTCCTGTAATTGT
AGTTCTTTCAGTTGTTGGTGGTGTTTCTGTTGCAACTGCTGGCTTTTTCGTTACAAAACA
TAAATTAGCTTCTAAAAAAGCTAAAGATTCAATCTCAATGTCAACAAGAAGTTAAATTTA
AATAAATATAATAATTAAATAATTAAAAATAAAAAAATAAAAAAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
LLALLVYKVDATGKAIALDFYYQFTTVENTPAKLLDCTSSVENKYVCSMVSGYGYFNIYA
ISDGTIKTNVISGLQYVSPIVGNVSSIYYQEPGIVKVNVSNIATGQTKIXIGGDDXSSVT
II---

---RSNISSNYFYYKGTFKNDSAIFELVIKYFQNADTITFAGEQLDMPDNSIKYQVTISN
WDFASETNNLQAVYYSKTGLVTKHKCDEIVSSSIVGTNDYQINTGEAEFNAKFASKVIVD
KNLYSSTYITALQSDDPLYNDIGSNVDSDYSLLTAIMTPYFRKQVELDPLFSSLIKTSEK
VSECETTEKWKIPVIVVLSVVGGVSVATAGFFVTKHKLASKKAKDSISMSTRS*i*inii
ik*lkikk*kk
Translated Amino Acid sequence (All Frames) 
Frame A:
hcwlywyik*mqlvkqlpwisiinlqplrihqqny*ivlhllrinmfvvwfqvmvisifm
qlvmvqlklm*lvvynmfhqllvmfhpfiiknlvllklmfqilqlvklklxlvvmixqvl
qls---

---kdqifhqiisiikvhskmiqqylnwllniskmpiqlhlqvnn*iclitlsniklpfq
igisqvkliiykqsitlkpv**qninvmk*fhhq*lvpmiiklilakqslmlnlqvk*l*
iktfipqhillhfnqmihfimilvqm*iptivy*lql*lhisvnkln*ihsfqv*lkqvk
kfqnvkqlkngkfl*l*ffqllvvfllqllafslqnin*llkklkiqsqcqqevkfk*i*
*lnn*k*knkkk

Frame B:
tvgstgi*srcnw*snclgfllsiynr*eytskiirlyfic*e*icl*ygfrlwlfqylc
n**wyn*n*cn*wfticftncw*cfihllsrtwyc*s*cfkycnwsn*nxyww**lxkcy
nyr---

---kikyfiklfll*ryiqk*fsni*igy*ifpkcrynyicr*tirya**lyqissyhfk
lgfrk*n**ftsslll*nrfsnkt*m**nsfiinswyq*lsn*ywrsrv*c*ick*sncr
*kplflniyyctsir*stl**ywfkcrfrl*fincnydsifp*ts*irstlfkfn*nk*k
sfrm*nn*kmenscncssfscwwcfccncwlfrykt*isf*ks*rfnlnvnkklnlnkyn
n*iiknkkikkk

Frame C:
LLALLVYKVDATGKAIALDFYYQFTTVENTPAKLLDCTSSVENKYVCSMVSGYGYFNIYA
ISDGTIKTNVISGLQYVSPIVGNVSSIYYQEPGIVKVNVSNIATGQTKIXIGGDDXSSVT
II---

---RSNISSNYFYYKGTFKNDSAIFELVIKYFQNADTITFAGEQLDMPDNSIKYQVTISN
WDFASETNNLQAVYYSKTGLVTKHKCDEIVSSSIVGTNDYQINTGEAEFNAKFASKVIVD
KNLYSSTYITALQSDDPLYNDIGSNVDSDYSLLTAIMTPYFRKQVELDPLFSSLIKTSEK
VSECETTEKWKIPVIVVLSVVGGVSVATAGFFVTKHKLASKKAKDSISMSTRS*i*inii
ik*lkikk*kk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHC609 (VHC609Q) /CSM/VH/VHC6-A/VHC609Q.Seq.d/                       2052   0.0
VHL375 (VHL375Q) /CSM/VH/VHL3-D/VHL375Q.Seq.d/                       1370   0.0
VHJ635 (VHJ635Q) /CSM/VH/VHJ6-B/VHJ635Q.Seq.d/                       1370   0.0
VHA242 (VHA242Q) /CSM/VH/VHA2-B/VHA242Q.Seq.d/                       1370   0.0
VHN861 (VHN861Q) /CSM/VH/VHN8-C/VHN861Q.Seq.d/                       1362   0.0
VHL269 (VHL269Q) /CSM/VH/VHL2-C/VHL269Q.Seq.d/                       1348   0.0
VHL111 (VHL111Q) /CSM/VH/VHL1-A/VHL111Q.Seq.d/                       1344   0.0
VHH482 (VHH482Q) /CSM/VH/VHH4-D/VHH482Q.Seq.d/                        991   0.0
VHH320 (VHH320Q) /CSM/VH/VHH3-A/VHH320Q.Seq.d/                        866   0.0
FC-IC1440 (FC-IC1440Q) /CSM/FC-IC/FC-IC1440Q.Seq.d/                   165   2e-39
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BA000026|BA000026.2 Mycoplasma penetrans HF-2 DNA, complete genome.    36   0.061  24
CQ346743|CQ346743.1 Sequence 20837 from Patent WO0157275.          36   0.45   2
CQ272467|CQ272467.1 Sequence 20728 from Patent WO0157277.          36   0.45   2
CQ234911|CQ234911.1 Sequence 21750 from Patent WO0157273.          36   0.45   2
CQ151533|CQ151533.1 Sequence 21555 from Patent WO0157276.          36   0.45   2
CQ112661|CQ112661.1 Sequence 21520 from Patent WO0157272.          36   0.45   2
AC189408|AC189408.1 Brassica rapa subsp. pekinensis clone KBrB059J21, *** SEQUENCING IN PROGRESS ***, 11 ordered pieces.    48   0.55   1
ED396045|ED396045.1 AUAC-aax56b11.b1 Ascaris suum whole genome shotgun library (PMAJ_4 GSS) Ascaris suum genomic, genomic survey sequence.    48   0.55   1
CQ334049|CQ334049.1 Sequence 8143 from Patent WO0157275.           36   1.3    2
CQ259926|CQ259926.1 Sequence 8187 from Patent WO0157277.           36   1.3    2
dna update 2007. 4.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116984_134(AC116984|pid:none) Dictyostelium discoideum chromos...    67   9e-10
AC116924_8(AC116924|pid:none) Dictyostelium discoideum chromosom...    64   1e-08
AC115680_4(AC115680|pid:none) Dictyostelium discoideum chromosom...    63   2e-08
AC116100_9(AC116100|pid:none) Dictyostelium discoideum chromosom...    63   2e-08
AC116963_25(AC116963|pid:none) Dictyostelium discoideum chromoso...    62   3e-08
AC116957_52(AC116957|pid:none) Dictyostelium discoideum chromoso...    61   6e-08
AC116920_20(AC116920|pid:none) Dictyostelium discoideum chromoso...    56   3e-06
AC116920_24(AC116920|pid:none) Dictyostelium discoideum chromoso...    55   3e-06
AC116920_25(AC116920|pid:none) Dictyostelium discoideum chromoso...    55   4e-06
AC116982_41(AC116982|pid:none) Dictyostelium discoideum chromoso...    55   6e-06
protein update 2009. 6.29
PSORT 

 psg: 0.80  gvh: 0.53  alm: 0.24  top: 0.90  tms: 0.07  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.06  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: cytoplasmic
	 20.0 %: nuclear
	 12.0 %: Golgi
	 12.0 %: mitochondrial
	 12.0 %: vesicles of secretory system
	  8.0 %: endoplasmic reticulum
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for VHC609 is cyt
5' end seq. ID VHC609F
5' end seq. 
>VHC609F.Seq
CACTGTTGGCTCTACTGGTATATAAAGTAGATGCAACTGGTAAAGCAATTGCCTTGGATT
TCTATTATCAATTTACAACCGTTGAGAATACACCAGCAAAATTATTAGATTGTACTTCAT
CTGTTGAGAATAAATATGTTTGTAGTATGGTTTCAGGTTATGGTTATTTCAATATTTATG
CAATTAGTGATGGTACAATTAAAACTAATGTAATTAGTGGTTTACAATATGTTTCACCAA
TTGTTGGTAATGTTTCATCCATTTATTATCAAGAACCTGGTATTGTTAAAGTTAATGTTT
CAAATATTGCAACTGGTCAAACTAAAATTANTATTGGTGGTGATGATTGNTCAAGTGTTA
CAATTATCGANNNNNNNNNN
Length of 5' end seq. 380
3' end seq. ID VHC609Z
3' end seq. 
>VHC609Z.Seq
NNNNNNNNNNAAAGATCAAATATTTCATCAAATTATTTCTATTATAAAGGTACATTCAAA
AATGATTCAGCAATATTTGAATTGGTTATTAAATATTTCCAAAATGCCGATACAATTACA
TTTGCAGGTGAACAATTAGATATGCCTGATAACTCTATCAAATATCAAGTTACCATTTCA
AATTGGGATTTCGCAAGTGAAACTAATAATTTACAAGCAGTCTATTACTCTAAAACCGGT
TTAGTAACAAAACATAAATGTGATGAAATAGTTTCATCATCAATAGTTGGTACCAATGAT
TATCAAATTAATACTGGCGAAGCAGAGTTTAATGCTAAATTTGCAAGTAAAGTAATTGTA
GATAAAAACCTTTATTCCTCAACATATATTACTGCACTTCAATCAGATGATCCACTTTAT
AATGATATTGGTTCAAATGTAGATTCCGACTATAGTTTATTAACTGCAATTATGACTCCA
TATTTCCGTAAACAAGTTGAATTAGATCCACTCTTTTCAAGTTTAATTAAAACAAGTGAA
AAAGTTTCAGAATGTGAAACAACTGAAAAATGGAAAATTCCTGTAATTGTAGTTCTTTCA
GTTGTTGGTGGTGTTTCTGTTGCAACTGCTGGCTTTTTCGTTACAAAACATAAATTAGCT
TCTAAAAAAGCTAAAGATTCAATCTCAATGTCAACAAGAAGTTAAATTTAAATAAATATA
ATAATTAAATAATTAAAAATAAAAAAATAAAAAAAAAA
Length of 3' end seq. 758
Connected seq. ID VHC609P
Connected seq. 
>VHC609P.Seq
CACTGTTGGCTCTACTGGTATATAAAGTAGATGCAACTGGTAAAGCAATTGCCTTGGATT
TCTATTATCAATTTACAACCGTTGAGAATACACCAGCAAAATTATTAGATTGTACTTCAT
CTGTTGAGAATAAATATGTTTGTAGTATGGTTTCAGGTTATGGTTATTTCAATATTTATG
CAATTAGTGATGGTACAATTAAAACTAATGTAATTAGTGGTTTACAATATGTTTCACCAA
TTGTTGGTAATGTTTCATCCATTTATTATCAAGAACCTGGTATTGTTAAAGTTAATGTTT
CAAATATTGCAACTGGTCAAACTAAAATTANTATTGGTGGTGATGATTGNTCAAGTGTTA
CAATTATCGA----------AAAGATCAAATATTTCATCAAATTATTTCTATTATAAAGG
TACATTCAAAAATGATTCAGCAATATTTGAATTGGTTATTAAATATTTCCAAAATGCCGA
TACAATTACATTTGCAGGTGAACAATTAGATATGCCTGATAACTCTATCAAATATCAAGT
TACCATTTCAAATTGGGATTTCGCAAGTGAAACTAATAATTTACAAGCAGTCTATTACTC
TAAAACCGGTTTAGTAACAAAACATAAATGTGATGAAATAGTTTCATCATCAATAGTTGG
TACCAATGATTATCAAATTAATACTGGCGAAGCAGAGTTTAATGCTAAATTTGCAAGTAA
AGTAATTGTAGATAAAAACCTTTATTCCTCAACATATATTACTGCACTTCAATCAGATGA
TCCACTTTATAATGATATTGGTTCAAATGTAGATTCCGACTATAGTTTATTAACTGCAAT
TATGACTCCATATTTCCGTAAACAAGTTGAATTAGATCCACTCTTTTCAAGTTTAATTAA
AACAAGTGAAAAAGTTTCAGAATGTGAAACAACTGAAAAATGGAAAATTCCTGTAATTGT
AGTTCTTTCAGTTGTTGGTGGTGTTTCTGTTGCAACTGCTGGCTTTTTCGTTACAAAACA
TAAATTAGCTTCTAAAAAAGCTAAAGATTCAATCTCAATGTCAACAAGAAGTTAAATTTA
AATAAATATAATAATTAAATAATTAAAAATAAAAAAATAAAAAAAAAA
Length of connected seq. 1118
Full length Seq ID -
Full length Seq. -
Length of full length seq. -