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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHC596
Library VH
(Link to library)
Clone ID VHC596
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U11418-1|Contig-U13539-1
Original site URL
Representative seq. ID VHC596P
(Link to Original site)
Representative DNA sequence 
>VHC596 (VHC596Q) /CSM/VH/VHC5-D/VHC596Q.Seq.d/
ACTTTCGGTACATCAACATTAAGTTGTCAATCATGTATTTTAACAGTTGCTAATAAAGCG
ATCGATTATAAACTANATTCAAGATATGCAACATCACCAAAATCAGTTATGGTAGGATCT
NTCAGTCAACCAANAATTACATTTACAAATGANGGAATAACTATAATTTATAGCGCAATA
NCAGGCTTCACTGAANGCTCATCAAANGGTAACAAATATTCATCAAAGTATATTTTAATT
TGGGATCCATTCNCANAATATTATGTANATAAATTTACATTAAAATCACXXXXXXXXXXA
TATTCAGATGGAGCAATTACATAAACTTTTATCAACATCAACTGGAGGTCTTGCAATTAT
TAAATACAAAAATTTGCTATGCTACTATTCAATAGTCCCAAATTTACAAACTTTAATTAT
TGGGAGTTATTTGCTTTCTTGCCCATATTATTCACTACCAACTATACAGTGCACAGTTTA
ACACCATCAATAGGGAAAGTTGGAGATACTATCACAATTAATGGTCAAAATTTAGATACA
GATATATATGATGTTTATTTCAACATTATTGATGACAACAGTAAAATTAAAGCAACAATA
ACATCAAGAACCGTAAGTTTTGTAAAAGTAATTGTTCCAAATGGTTTTGGTTATGCATTA
GTCTACACTCAAAATATACTTAATCCAACTACCTCTGATAAACTTTCATTTTCATATCCA
TCACCAGCGATTGTCAAAGTAATTAGTCAACCATTTAGTACAGATATCATCAATAGATTC
TTTGTTATTGGTCAAAACCATCGTTCTTTAATAACCAATATTGTTATTAATCCATACATC
GATAATATTGAAAAAGAAGCAATTTATTGTGAAATTGTTGTCGGTAAACAAGCGTCAAAG
ACTATATATCCAAGTGATTTAGATGAAAATCCAACAAATTATAATTTATATTATTATCCC
CCAGCAGTTGTTGACATATCAGAAGTTTCAACTGATGGTGGGAAGTTATAATAAAAGGTA
CAAATTTTATTCCAGCCTCGCCTAAAG
sequence update 2002.10.25
Translated Amino Acid sequence 
TFGTSTLSCQSCILTVANKAIDYKLXSRYATSPKSVMVGSXSQPXITFTNXGITIIYSAI
XGFTEXSSXGNKYSSKYILIWDPFXXYYVXKFTLKS---

---IQMEQLHKLLSTSTGGLAIIKYKNLLCYYSIVPNLQTLIIGSYLLSCPYYSLPTIQC
TV*hhq*gkleilsqlmvki*iqiymmfistllmttvklkqq*hqep*vl*k*lfqmvlv
mh*stlkiyliqlplinfhfhihhqrlsk*lvnhlvqissidslllvktivl**pillli
htsiilkkkqfivkllsvnkrqrlyiqvi*mkiqqiiiyiiipqqlltyqkfqlmvgsyn
krykfyssla*
Translated Amino Acid sequence (All Frames) 
Frame A:
TFGTSTLSCQSCILTVANKAIDYKLXSRYATSPKSVMVGSXSQPXITFTNXGITIIYSAI
XGFTEXSSXGNKYSSKYILIWDPFXXYYVXKFTLKS---

---ifrwsnyinfyqhqlevlqllntkicyatiq*sqiykl*llgvicflahiihyqlys
aqfntinreswryyhn*wskfryryi*clfqhy**qq*n*snnniknrkfcksncskwfw
lcislhskyt*snyl**tfifisitsdcqsn*sti*yryhq*ilcywskpsffnnqycy*
sihr*y*krsnll*nccr*tsvkdyisk*fr*ksnkl*fillspssc*hirsfn*wwevi
ikgtnfipaspk

Frame B:
lsvhqh*vvnhvf*qllikrsiinxiqdmqhhqnqlw*dlsvnqxlhlqmxe*l*fiaqx
qaslxahqxvtnihqsif*fgihsxnimxinlh*nh---

---ysdgait*tfininwrscny*iqkfamllfnspkftnfnywelfaflpilfttnytv
hsltpsigkvgdtitingqnldtdiydvyfniiddnskikatitsrtvsfvkvivpngfg
yalvytqnilnpttsdklsfsypspaivkvisqpfstdiinrffvigqnhrslitnivin
pyidniekeaiyceivvgkqasktiypsdldenptnynlyyyppavvdisevstdggkl*
*kvqilfqprlk

Frame C:
fryiniklsimyfnsc**sdrl*txfkicnitkisygrixqstxnyiyk*xnnynl*rnx
rlh*xlikx*qifikvyfnlgsixxilcx*iyiki---

---IQMEQLHKLLSTSTGGLAIIKYKNLLCYYSIVPNLQTLIIGSYLLSCPYYSLPTIQC
TV*hhq*gkleilsqlmvki*iqiymmfistllmttvklkqq*hqep*vl*k*lfqmvlv
mh*stlkiyliqlplinfhfhihhqrlsk*lvnhlvqissidslllvktivl**pillli
htsiilkkkqfivkllsvnkrqrlyiqvi*mkiqqiiiyiiipqqlltyqkfqlmvgsyn
krykfyssla*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHC596 (VHC596Q) /CSM/VH/VHC5-D/VHC596Q.Seq.d/                       1957   0.0
VHE714 (VHE714Q) /CSM/VH/VHE7-A/VHE714Q.Seq.d/                        547   e-154
VHN859 (VHN859Q) /CSM/VH/VHN8-C/VHN859Q.Seq.d/                        420   e-116
VHL279 (VHL279Q) /CSM/VH/VHL2-D/VHL279Q.Seq.d/                        396   e-109
VHB491 (VHB491Q) /CSM/VH/VHB4-D/VHB491Q.Seq.d/                        396   e-109
VHB141 (VHB141Q) /CSM/VH/VHB1-B/VHB141Q.Seq.d/                        396   e-109
VHA689 (VHA689Q) /CSM/VH/VHA6-D/VHA689Q.Seq.d/                        396   e-109
AHQ549 (AHQ549Q) /CSM/AH/AHQ5-C/AHQ549Q.Seq.d/                        396   e-109
AHJ355 (AHJ355Q) /CSM/AH/AHJ3-C/AHJ355Q.Seq.d/                        396   e-109
VHA774 (VHA774Q) /CSM/VH/VHA7-D/VHA774Q.Seq.d/                        389   e-107
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BW998607|BW998607.1 Bombyx mori mRNA, clone:SES0480, expressed in fertilized egg.    54   0.008  1
AB140664|AB140664.1 Homo sapiens DNA, STS on chromosome 18, D18S0159i, sequence tagged site.    48   0.51   1
CS459563|CS459563.1 Sequence 44 from Patent WO2006117596.          48   0.51   1
AC040963|AC040963.6 Homo sapiens chromosome 18, clone RP11-685A21, complete sequence.    48   0.51   1
BD460411|BD460411.1 Diagnosis of Diseases Associated with Cell Cycle.    40   1.1    4
BD452333|BD452333.1 Diagnosis of Diseases Associated with Cell Cycle.    40   1.1    4
AX251947|AX251947.1 Sequence 208 from Patent WO0168911.            40   1.1    4
CR343357|CR343357.1 mte1-76D1FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula.    34   1.4    2
AC069188|AC069188.3 Homo sapiens chromosome 4 clone RP11-566O13 map 4, WORKING DRAFT SEQUENCE, 23 unordered pieces.    40   1.8    5
AC013928|AC013928.1 Drosophila melanogaster, WORKING DRAFT SEQUENCE, in ordered pieces.    44   1.8    4
dna update 2007. 4.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BA000045_213(BA000045|pid:none) Gloeobacter violaceus PCC 7421 D...    44   0.009
CP000473_3528(CP000473|pid:none) Solibacter usitatus Ellin6076, ...    40   0.14
BA000045_1790(BA000045|pid:none) Gloeobacter violaceus PCC 7421 ...    40   0.18
AM933612_1(AM933612|pid:none) Paenibacillus sp. C36 cgt gene for...    38   0.51
FN357428_6(FN357428|pid:none) Schistosoma mansoni genome sequenc...    35   4.3
AM180355_630(AM180355|pid:none) Clostridium difficile 630 comple...    35   4.3
CP000360_3226(CP000360|pid:none) Acidobacteria bacterium Ellin34...    35   4.3
AY688678_1(AY688678|pid:none) Mus musculus plexin D1 (Plxnd1) mR...    35   5.7
EU305539_1(EU305539|pid:none) Paenibacillus graminis strain MC22...    35   5.7
AM910991_143(AM910991|pid:none) Plasmodium knowlesi strain H chr...    34   9.6
protein update 2009. 6.28
PSORT 

 psg: 0.89  gvh: 0.55  alm: 0.39  top: 0.60  tms: 0.00  mit: 0.31  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 32.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system
	  4.0 %: extracellular, including cell wall
	  4.0 %: endoplasmic reticulum

>> prediction for VHC596 is nuc
5' end seq. ID VHC596F
5' end seq. 
>VHC596F.Seq
ACTTTCGGTACATCAACATTAAGTTGTCAATCATGTATTTTAACAGTTGCTAATAAAGCG
ATCGATTATAAACTANATTCAAGATATGCAACATCACCAAAATCAGTTATGGTAGGATCT
NTCAGTCAACCAANAATTACATTTACAAATGANGGAATAACTATAATTTATAGCGCAATA
NCAGGCTTCACTGAANGCTCATCAAANGGTAACAAATATTCATCAAAGTATATTTTAATT
TGGGATCCATTCNCANAATATTATGTANATAAATTTACATTAAAATCACNNNNNNNNNN
Length of 5' end seq. 299
3' end seq. ID VHC596Z
3' end seq. 
>VHC596Z.Seq
NNNNNNNNNNATATTCAGATGGAGCAATTACATAAACTTTTATCAACATCAACTGGAGGT
CTTGCAATTATTAAATACAAAAATTTGCTATGCTACTATTCAATAGTCCCAAATTTACAA
ACTTTAATTATTGGGAGTTATTTGCTTTCTTGCCCATATTATTCACTACCAACTATACAG
TGCACAGTTTAACACCATCAATAGGGAAAGTTGGAGATACTATCACAATTAATGGTCAAA
ATTTAGATACAGATATATATGATGTTTATTTCAACATTATTGATGACAACAGTAAAATTA
AAGCAACAATAACATCAAGAACCGTAAGTTTTGTAAAAGTAATTGTTCCAAATGGTTTTG
GTTATGCATTAGTCTACACTCAAAATATACTTAATCCAACTACCTCTGATAAACTTTCAT
TTTCATATCCATCACCAGCGATTGTCAAAGTAATTAGTCAACCATTTAGTACAGATATCA
TCAATAGATTCTTTGTTATTGGTCAAAACCATCGTTCTTTAATAACCAATATTGTTATTA
ATCCATACATCGATAATATTGAAAAAGAAGCAATTTATTGTGAAATTGTTGTCGGTAAAC
AAGCGTCAAAGACTATATATCCAAGTGATTTAGATGAAAATCCAACAAATTATAATTTAT
ATTATTATCCCCCAGCAGTTGTTGACATATCAGAAGTTTCAACTGATGGTGGGAAGTTAT
AATAAAAGGTACAAATTTTATTCCAGCCTCGCCTAAAG
Length of 3' end seq. 758
Connected seq. ID VHC596P
Connected seq. 
>VHC596P.Seq
ACTTTCGGTACATCAACATTAAGTTGTCAATCATGTATTTTAACAGTTGCTAATAAAGCG
ATCGATTATAAACTANATTCAAGATATGCAACATCACCAAAATCAGTTATGGTAGGATCT
NTCAGTCAACCAANAATTACATTTACAAATGANGGAATAACTATAATTTATAGCGCAATA
NCAGGCTTCACTGAANGCTCATCAAANGGTAACAAATATTCATCAAAGTATATTTTAATT
TGGGATCCATTCNCANAATATTATGTANATAAATTTACATTAAAATCAC----------A
TATTCAGATGGAGCAATTACATAAACTTTTATCAACATCAACTGGAGGTCTTGCAATTAT
TAAATACAAAAATTTGCTATGCTACTATTCAATAGTCCCAAATTTACAAACTTTAATTAT
TGGGAGTTATTTGCTTTCTTGCCCATATTATTCACTACCAACTATACAGTGCACAGTTTA
ACACCATCAATAGGGAAAGTTGGAGATACTATCACAATTAATGGTCAAAATTTAGATACA
GATATATATGATGTTTATTTCAACATTATTGATGACAACAGTAAAATTAAAGCAACAATA
ACATCAAGAACCGTAAGTTTTGTAAAAGTAATTGTTCCAAATGGTTTTGGTTATGCATTA
GTCTACACTCAAAATATACTTAATCCAACTACCTCTGATAAACTTTCATTTTCATATCCA
TCACCAGCGATTGTCAAAGTAATTAGTCAACCATTTAGTACAGATATCATCAATAGATTC
TTTGTTATTGGTCAAAACCATCGTTCTTTAATAACCAATATTGTTATTAATCCATACATC
GATAATATTGAAAAAGAAGCAATTTATTGTGAAATTGTTGTCGGTAAACAAGCGTCAAAG
ACTATATATCCAAGTGATTTAGATGAAAATCCAACAAATTATAATTTATATTATTATCCC
CCAGCAGTTGTTGACATATCAGAAGTTTCAACTGATGGTGGGAAGTTATAATAAAAGGTA
CAAATTTTATTCCAGCCTCGCCTAAAG
Length of connected seq. 1037
Full length Seq ID -
Full length Seq. -
Length of full length seq. -