VHC580
Library VH
(Link to library)
Clone ID VHC580
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12390-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VHC580 (VHC580Q) /CSM/VH/VHC5-D/VHC580Q.Seq.d/
XXXXXXXXXXATCCAAATGCAACTCTTCATTCAAATAACACTTTTATAATTTCAAATAGT
AGTGTACAAGGTAGTGGTGTAATTAATTCATCAATTTCATCAAATGGTGGATCAAGTTAT
GGTAACGATACAATCACAAACTTGGATATTAATGGTAATTTAGAATCAAATGAAGATGAA
TTTATATTTACATTGGATGGTAAAAACTCTACAACTATTAATATTGGTAATAATGCAACC
ATTACAAATGCTACTTTAATCATTAGAGTTAGTAATGATATTGTAAATTCAACCCAAAAT
ACAACATTGGTAACAAGTTCAAATTTGGATGCAACCTTTTCAAAAATTGTTTTTCAATCA
TATGATCCAGAAACTGGAATTCAAAAACAATTGGATGATTGTGCTCATAAAATTAAAAAT
GATAAAGGTACTCTTGGATTATTATTAAATTCAAATGCTAAACAATGTGTAATAGTTTCC
ACTACAAGTAGTGGTACAGGTGGTGGCACAGGTGGTGGTACAGGTGGTAGTACAGGTGGT
GGTACAAGTGGTAGTACAGGTGGAGGTACAGGTGGTACAGGTGGAGGTACAGGCCAAACT
GTTGTGGTTGTTGAAGAAGATCAAAAGAGCTCATTAAGTGCTGGTGCAATTGCTGGTATT
ATTGTAGGTATCGTTTGTGTTGCTGGTATTGTA
sequence update 2002. 9.10
Translated Amino Acid sequence
---PNATLHSNNTFIISNSSVQGSGVINSSISSNGGSSYGNDTITNLDINGNLESNEDEF
IFTLDGKNSTTINIGNNATITNATLIIRVSNDIVNSTQNTTLVTSSNLDATFSKIVFQSY
DPETGIQKQLDDCAHKIKNDKGTLGLLLNSNAKQCVIVSTTSSGTGGGTGGGTGGSTGGG
TSGSTGGGTGGTGGGTGQTVVVVEEDQKSSLSAGAIAGIIVGIVCVAGIV


Translated Amino Acid sequence (All Frames)
Frame A:
---skcnssfk*hfynfk**ctr*wcn*finfikwwiklw*rynhklgy*w*frik*r*i
yiyigw*klyny*yw**cnhykcyfnh*s***yckfnpkynignkfkfgcnlfkncfsii
*srnwnsktig*lcs*n*k**ryswiiikfkc*tmcnsfhyk*wyrwwhrwwyrw*yrww
ykw*yrwryrwyrwryrpnccgc*rrskelikcwcncwyycryrlccwyc


Frame B:
---PNATLHSNNTFIISNSSVQGSGVINSSISSNGGSSYGNDTITNLDINGNLESNEDEF
IFTLDGKNSTTINIGNNATITNATLIIRVSNDIVNSTQNTTLVTSSNLDATFSKIVFQSY
DPETGIQKQLDDCAHKIKNDKGTLGLLLNSNAKQCVIVSTTSSGTGGGTGGGTGGSTGGG
TSGSTGGGTGGTGGGTGQTVVVVEEDQKSSLSAGAIAGIIVGIVCVAGIV


Frame C:
---qmqlfiqitll*fqivvykvvv*lihqfhqmvdqvmvtiqsqtwilmvi*nqmkmnl
ylhwmvktlqllilvimqplqmll*slelvmil*iqpkiqhw*qvqiwmqpfqklffnhm
iqklefknnwmivliklkmikvlldyy*iqmlnnv**fplqvvvqvvaqvvvqvvvqvvv
qvvvqvevqvvqvevqakllwllkkikrah*vlvqllvll*vsfvllvl


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHH521 (VHH521Q) /CSM/VH/VHH5-A/VHH521Q.Seq.d/ 944 0.0
VHC580 (VHC580Q) /CSM/VH/VHC5-D/VHC580Q.Seq.d/ 944 0.0
VHA340 (VHA340Q) /CSM/VH/VHA3-B/VHA340Q.Seq.d/ 944 0.0
VHD329 (VHD329Q) /CSM/VH/VHD3-B/VHD329Q.Seq.d/ 940 0.0
VHH794 (VHH794Q) /CSM/VH/VHH7-D/VHH794Q.Seq.d/ 938 0.0
VHE339 (VHE339Q) /CSM/VH/VHE3-B/VHE339Q.Seq.d/ 938 0.0
VHJ262 (VHJ262Q) /CSM/VH/VHJ2-C/VHJ262Q.Seq.d/ 928 0.0
VHH520 (VHH520Q) /CSM/VH/VHH5-A/VHH520Q.Seq.d/ 924 0.0
VHK596 (VHK596Q) /CSM/VH/VHK5-D/VHK596Q.Seq.d/ 902 0.0
VHL427 (VHL427Q) /CSM/VH/VHL4-B/VHL427Q.Seq.d/ 886 0.0

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence. 32 0.002 9
AZ682951|AZ682951.1 ENTHL32TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 54 0.005 1
AZ541475|AZ541475.1 ENTGK77TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 54 0.005 1
AC147950|AC147950.2 Papio anubis clone RP41-263L16, WORKING DRAFT SEQUENCE, 3 ordered pieces. 38 0.017 7
AM479829|AM479829.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X007751.19, clone ENTAV 115. 42 0.22 5
AZ679768|AZ679768.1 ENTJB51TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 38 0.24 2
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 48 0.33 1
AL389914|AL389914.3 Human chromosome 14 DNA sequence BAC C-2307P3 of library CalTech-D from chromosome 14 of Homo sapiens (Human). 38 0.55 4
AC124970|AC124970.21 Medicago truncatula clone mth2-7j19, complete sequence. 38 0.68 5
DU356160|DU356160.1 1098312053302 CHORI-243 Ovis aries genomic clone CH243-31D22, genomic survey sequence. 38 0.71 2
dna update 2007. 4.30
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CP000647_1382(CP000647|pid:none) Klebsiella pneumoniae subsp. pn... 34 3.7
CP000568_3082(CP000568|pid:none) Clostridium thermocellum ATCC 2... 34 4.8
AY698035_1(AY698035|pid:none) Desmognathus marmoratus isolate 69... 33 6.2
AY612344_1(AY612344|pid:none) Desmognathus marmoratus voucher KH... 33 8.2
AC116957_68(AC116957|pid:none) Dictyostelium discoideum chromoso... 33 8.2

protein update 2009. 2.24
PSORT

psg: 0.85 gvh: 0.39 alm: 0.18 top: 0.67 tms: 0.07 mit: 0.32 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.02 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 1.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

20.0 %: cytoplasmic
20.0 %: nuclear
16.0 %: vesicles of secretory system
12.0 %: mitochondrial
8.0 %: Golgi
8.0 %: endoplasmic reticulum
4.0 %: extracellular, including cell wall
4.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: plasma membrane

>> prediction for VHC580 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VHC580Z
3' end seq.
>VHC580Z.Seq
NNNNNNNNNNATCCAAATGCAACTCTTCATTCAAATAACACTTTTATAATTTCAAATAGT
AGTGTACAAGGTAGTGGTGTAATTAATTCATCAATTTCATCAAATGGTGGATCAAGTTAT
GGTAACGATACAATCACAAACTTGGATATTAATGGTAATTTAGAATCAAATGAAGATGAA
TTTATATTTACATTGGATGGTAAAAACTCTACAACTATTAATATTGGTAATAATGCAACC
ATTACAAATGCTACTTTAATCATTAGAGTTAGTAATGATATTGTAAATTCAACCCAAAAT
ACAACATTGGTAACAAGTTCAAATTTGGATGCAACCTTTTCAAAAATTGTTTTTCAATCA
TATGATCCAGAAACTGGAATTCAAAAACAATTGGATGATTGTGCTCATAAAATTAAAAAT
GATAAAGGTACTCTTGGATTATTATTAAATTCAAATGCTAAACAATGTGTAATAGTTTCC
ACTACAAGTAGTGGTACAGGTGGTGGCACAGGTGGTGGTACAGGTGGTAGTACAGGTGGT
GGTACAAGTGGTAGTACAGGTGGAGGTACAGGTGGTACAGGTGGAGGTACAGGCCAAACT
GTTGTGGTTGTTGAAGAAGATCAAAAGAGCTCATTAAGTGCTGGTGCAATTGCTGGTATT
ATTGTAGGTATCGTTTGTGTTGCTGGTATTGTA
Length of 3' end seq. 693
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -