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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHC575
Library VH
(Link to library)
Clone ID VHC575
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12327-1
Original site URL
Representative seq. ID VHC575P
(Link to Original site)
Representative DNA sequence 
>VHC575 (VHC575Q) /CSM/VH/VHC5-D/VHC575Q.Seq.d/
ACTTCTCAATCTTATCAAGAATATAGCGTTAAACCAAAATCATTATATTTCAATGGTAGA
TCATTAGGTGATGAAGTTAATTACATTTTAAATAGAAAAACTAGTAAAAAACTATTACCT
GGTAATTCATTAAAGAAACCAAGTCTATTGGTTCAACCATGGTCAATTGGTAAAACTACA
AACTCTACAAACACACTCAAACAAGCAAGTAAATACAATGAATCTGAAGTAAAGGATGAA
AAATCAATGAGAAATAGACAAGTTGAAAAGAGAAGAGTTTCTTCAACAAATCGTTCACCA
TTTTTAGAGTTTCTTTCACATCCATCAATTTTACTTTTAAATCTTGAACCATCATCAACT
GATGGTATAGTAAATATTGATCTCTCTCAATTAGTAGAAGCTGGTTCAACAATTCATATC
CATGCCGTTGATAATGATTCTATCTTTACAAAAGXXXXXXXXXXAAAATTNATGAAGAGA
ATTGGTAAACATCCAGTTTCAATTNCCAAAATTAATTTCTTCTTCAACCACTACAGATTC
AAAATCAACTCATTCATCAGTAATTTCTTCTTCTTCCTCTTCAAATTTATCAACCACTAN
TGATAGTTCAAAAGATAAAAAGNAACTGAAAAAGAAGAAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
TSQSYQEYSVKPKSLYFNGRSLGDEVNYILNRKTSKKLLPGNSLKKPSLLVQPWSIGKTT
NSTNTLKQASKYNESEVKDEKSMRNRQVEKRRVSSTNRSPFLEFLSHPSILLLNLEPSST
DGIVNIDLSQLVEAGSTIHIHAVDNDSIFTK---

---KXMKRIGKHPVSIXKINFFFNHYRFKINSFISNFFFFLFKFINHX**fkr*kxteke
e
Translated Amino Acid sequence (All Frames) 
Frame A:
TSQSYQEYSVKPKSLYFNGRSLGDEVNYILNRKTSKKLLPGNSLKKPSLLVQPWSIGKTT
NSTNTLKQASKYNESEVKDEKSMRNRQVEKRRVSSTNRSPFLEFLSHPSILLLNLEPSST
DGIVNIDLSQLVEAGSTIHIHAVDNDSIFTK---

---kixeenw*tssfnxqn*fllqplqiqnqlihq*flllplqiyqplxivqkikxn*kr
rk

Frame B:
llnliknialnqnhyismvdh*vmklitf*ieklvknyylvih*rnqvywfnhgqlvklq
tlqthsnkqvntmnlk*rmknq*eidklkreeflqqivhhf*sffhihqfyf*ilnhhql
mv**ilisln**klvqqfismplimilslqk---

---KXMKRIGKHPVSIXKINFFFNHYRFKINSFISNFFFFLFKFINHX**fkr*kxteke
e

Frame C:
fsilsri*r*tkiiifqw*iir**s*lhfk*kn**ktitw*fiketksigstmvnw*nyk
lykhtqtsk*iq*i*skg*kinek*ts*keksffnksftifrvsftsinftfks*tiin*
wysky*slsisrswfnnsypcr***fylyk---

---nx*relvniqfqxpklissstttdsksthssvissssssnlsttxdsskdkkxlkkk
k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHC575 (VHC575Q) /CSM/VH/VHC5-D/VHC575Q.Seq.d/                       1187   0.0
VHM706 (VHM706Q) /CSM/VH/VHM7-A/VHM706Q.Seq.d/                        894   0.0
VHM472 (VHM472Q) /CSM/VH/VHM4-C/VHM472Q.Seq.d/                        884   0.0
VHG415 (VHG415Q) /CSM/VH/VHG4-A/VHG415Q.Seq.d/                        884   0.0
VHB392 (VHB392Q) /CSM/VH/VHB3-D/VHB392Q.Seq.d/                        815   0.0
VHC626 (VHC626Q) /CSM/VH/VHC6-B/VHC626Q.Seq.d/                        813   0.0
VHA602 (VHA602Q) /CSM/VH/VHA6-A/VHA602Q.Seq.d/                        773   0.0
VHC649 (VHC649Q) /CSM/VH/VHC6-C/VHC649Q.Seq.d/                        617   e-176
VHG535 (VHG535Q) /CSM/VH/VHG5-B/VHG535Q.Seq.d/                        498   e-140
SHH172 (SHH172Q) /CSM/SH/SHH1-C/SHH172Q.Seq.d/                        472   e-132
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BG226304|BG226304.1 kq20a02.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5', mRNAsequence.    44   0.004  2
ES222874|ES222874.1 MpHnorm_ag1_G13 Myzus persicae, tobacco lineage, aphid head normalized library Myzus persicae cDNA clone MpHnorm_ag1_G13, mRNA sequence.    52   0.020  1
ES220333|ES220333.1 MpGnorm_ag6_F06 Myzus persicae, tobacco lineage, aphid digestive tract normalized library Myzus persicae cDNA clone MpGnorm_ag6_F06, mRNA sequence.    52   0.020  1
ES217936|ES217936.1 MpFVN_ag2_E24 Myzus persicae, line F001, PLRV free, whole female aphid library Myzus persicae cDNA clone MpFVN_ag2_E24, mRNA sequence.    52   0.020  1
ES222874|ES222874.1 MpHnorm_ag1_G13 Myzus persicae, tobacco lineage, aphid head normalized library Myzus persicae cDNA clone MpHnorm_ag1_G13, mRNA sequence.    52   0.020  1
ES220333|ES220333.1 MpGnorm_ag6_F06 Myzus persicae, tobacco lineage, aphid digestive tract normalized library Myzus persicae cDNA clone MpGnorm_ag6_F06, mRNA sequence.    52   0.020  1
ES217936|ES217936.1 MpFVN_ag2_E24 Myzus persicae, line F001, PLRV free, whole female aphid library Myzus persicae cDNA clone MpFVN_ag2_E24, mRNA sequence.    52   0.020  1
DW014230|DW014230.1 w7l15_M13F Myzus persicae, tobacco lineage, whole aphid library Myzus persicae cDNA clone w7l15_M13F, mRNA sequence.    52   0.020  1
DW013855|DW013855.1 w6j1_M13F Myzus persicae, tobacco lineage, whole aphid library Myzus persicae cDNA clone w6j1_M13F, mRNA sequence.    52   0.020  1
DW013658|DW013658.1 w6a21_M13F Myzus persicae, tobacco lineage, whole aphid library Myzus persicae cDNA clone w6a21_M13F, mRNA sequence.    52   0.020  1
dna update 2007. 4.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL844506_148(AL844506|pid:none) Plasmodium falciparum 3D7 chromo...    37   0.63
BC090886_1(BC090886|pid:none) Homo sapiens chromosome 1 open rea...    36   0.82
AC007592_6(AC007592|pid:none) Genomic sequence for Arabidopsis t...    36   0.82
CP000084_162(CP000084|pid:none) Candidatus Pelagibacter ubique H...    36   1.1
AL133320_3(AL133320|pid:none) Human DNA sequence from clone RP4-...    36   1.1
AM502220_44(AM502220|pid:none) Leishmania infantum chromosome 2.       35   1.8
AP006725_4292(AP006725|pid:none) Klebsiella pneumoniae NTUH-K204...    34   3.1
CP000964_663(CP000964|pid:none) Klebsiella pneumoniae 342, compl...    34   3.1
CP000647_3383(CP000647|pid:none) Klebsiella pneumoniae subsp. pn...    34   4.1
T34342(T34342) hypothetical protein T08H4.1 - Caenorhabditis ele...    34   4.1
protein update 2009. 6.28
PSORT 

 psg: 0.69  gvh: 0.36  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 24.0 %: nuclear
	 20.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for VHC575 is cyt
5' end seq. ID VHC575F
5' end seq. 
>VHC575F.Seq
ACTTCTCAATCTTATCAAGAATATAGCGTTAAACCAAAATCATTATATTTCAATGGTAGA
TCATTAGGTGATGAAGTTAATTACATTTTAAATAGAAAAACTAGTAAAAAACTATTACCT
GGTAATTCATTAAAGAAACCAAGTCTATTGGTTCAACCATGGTCAATTGGTAAAACTACA
AACTCTACAAACACACTCAAACAAGCAAGTAAATACAATGAATCTGAAGTAAAGGATGAA
AAATCAATGAGAAATAGACAAGTTGAAAAGAGAAGAGTTTCTTCAACAAATCGTTCACCA
TTTTTAGAGTTTCTTTCACATCCATCAATTTTACTTTTAAATCTTGAACCATCATCAACT
GATGGTATAGTAAATATTGATCTCTCTCAATTAGTAGAAGCTGGTTCAACAATTCATATC
CATGCCGTTGATAATGATTCTATCTTTACAAAAGNNNNNNNNNN
Length of 5' end seq. 464
3' end seq. ID VHC575Z
3' end seq. 
>VHC575Z.Seq
NNNNNNNNNNAAAATTNATGAAGAGAATTGGTAAACATCCAGTTTCAATTNCCAAAATTA
ATTTCTTCTTCAACCACTACAGATTCAAAATCAACTCATTCATCAGTAATTTCTTCTTCT
TCCTCTTCAAATTTATCAACCACTANTGATAGTTCAAAAGATAAAAAGNAACTGAAAAAG
AAGAAAA
Length of 3' end seq. 187
Connected seq. ID VHC575P
Connected seq. 
>VHC575P.Seq
ACTTCTCAATCTTATCAAGAATATAGCGTTAAACCAAAATCATTATATTTCAATGGTAGA
TCATTAGGTGATGAAGTTAATTACATTTTAAATAGAAAAACTAGTAAAAAACTATTACCT
GGTAATTCATTAAAGAAACCAAGTCTATTGGTTCAACCATGGTCAATTGGTAAAACTACA
AACTCTACAAACACACTCAAACAAGCAAGTAAATACAATGAATCTGAAGTAAAGGATGAA
AAATCAATGAGAAATAGACAAGTTGAAAAGAGAAGAGTTTCTTCAACAAATCGTTCACCA
TTTTTAGAGTTTCTTTCACATCCATCAATTTTACTTTTAAATCTTGAACCATCATCAACT
GATGGTATAGTAAATATTGATCTCTCTCAATTAGTAGAAGCTGGTTCAACAATTCATATC
CATGCCGTTGATAATGATTCTATCTTTACAAAAG----------AAAATTNATGAAGAGA
ATTGGTAAACATCCAGTTTCAATTNCCAAAATTAATTTCTTCTTCAACCACTACAGATTC
AAAATCAACTCATTCATCAGTAATTTCTTCTTCTTCCTCTTCAAATTTATCAACCACTAN
TGATAGTTCAAAAGATAAAAAGNAACTGAAAAAGAAGAAAA
Length of connected seq. 631
Full length Seq ID -
Full length Seq. -
Length of full length seq. -