VHC552
Library VH
(Link to library)
Clone ID VHC552
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12463-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VHC552 (VHC552Q) /CSM/VH/VHC5-C/VHC552Q.Seq.d/
XXXXXXXXXXACCGTTATCAATTACAATATGCCAAATAATATGGCAAATTACATTCACAG
AGTTGGTCGTACTGCTCGTGCTGGTATGGATGGTAAATCTTGCTCTTTTATCACTGATAA
TGATCGTAAACTCTTAAAAGATATTGTTACAAAAGCAAGAAATAAAGCAAAATCAAGATC
TGTTTCACAAGATAATGTAAATTTCTGGAGAAATAGAATTGAAGAATTAACAGAAGATAT
TAAATCAATTGTTAGAGAAGAAATGAAAGAAGCAGATTTAAGAAAAGCAGAGAAAACATT
AGATAAAGCAGAGAAAATCATTTCGAATGCTGATGCAAATGTTGAAACACCAAAAGTTTG
GTATAAAACAAAACAAGAAGAAGATAAATCAAAAGAGTTATGGAAGATTGAAAATAACAT
TGTTAATCCAGGTAAAAAATTAAAGGCACCAATCGATGTTACCGGTGTAAATAATGTACC
ATCAATTAAAAAATTAAAACAAAAGAAAGATCCATACTATGGTTTATCTAGAAAACAAAG
AAGACATAGACAATTTAAAGAAGAGTTTGAACGTGAACAACAAGAGGAGAGAAAGAGAAA
AGGTGGTGACGATGGTGA
sequence update 2002. 9.10
Translated Amino Acid sequence
---VINYNMPNNMANYIHRVGRTARAGMDGKSCSFITDNDRKLLKDIVTKARNKAKSRSV
SQDNVNFWRNRIEELTEDIKSIVREEMKEADLRKAEKTLDKAEKIISNADANVETPKVWY
KTKQEEDKSKELWKIENNIVNPGKKLKAPIDVTGVNNVPSIKKLKQKKDPYYGLSRKQRR
HRQFKEEFEREQQEERKRKGGDDG


Translated Amino Acid sequence (All Frames)
Frame A:
---plsiticqiiwqitftelvvllvlvwmvnlallslimivns*killqkqeikqnqdl
fhkim*isgeielkn*qkilnqllekk*kkqi*ekqrkh*ikqrksfrmlmqmlkhqkfg
ikqnkkkinqksygrlkitlliqvkn*rhqsmlpv*imyhqlkn*nkrkihtmvylenke
didnlkkslnvnnkrrerekvvtmv


Frame B:
---ryqlqyak*ygklhsqswsycscwygw*illfyh***s*tlkrycykskk*skikic
ftr*ckflek*n*rinrry*inc*rrnersrfkksrenir*srenhfec*ckc*ntkslv
*nktrrr*ikrvmed*k*hc*sr*kikgtnrcyrck*ctin*kiktkersilwfi*ktkk
t*ti*rrv*t*ttrgekekrw*rw*


Frame C:
---VINYNMPNNMANYIHRVGRTARAGMDGKSCSFITDNDRKLLKDIVTKARNKAKSRSV
SQDNVNFWRNRIEELTEDIKSIVREEMKEADLRKAEKTLDKAEKIISNADANVETPKVWY
KTKQEEDKSKELWKIENNIVNPGKKLKAPIDVTGVNNVPSIKKLKQKKDPYYGLSRKQRR
HRQFKEEFEREQQEERKRKGGDDG


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHC552 (VHC552Q) /CSM/VH/VHC5-C/VHC552Q.Seq.d/ 597 e-170
VHE367 (VHE367Q) /CSM/VH/VHE3-C/VHE367Q.Seq.d/ 589 e-167
VHL131 (VHL131Q) /CSM/VH/VHL1-B/VHL131Q.Seq.d/ 585 e-166
AHF536 (AHF536Q) /CSM/AH/AHF5-B/AHF536Q.Seq.d/ 575 e-163
VHG292 (VHG292Q) /CSM/VH/VHG2-D/VHG292Q.Seq.d/ 502 e-141
VSK145 (VSK145Q) /CSM/VS/VSK1-B/VSK145Q.Seq.d/ 42 0.010
VFM737 (VFM737Q) /CSM/VF/VFM7-B/VFM737Q.Seq.d/ 42 0.010
VHI651 (VHI651Q) /CSM/VH/VHI6-C/VHI651Q.Seq.d/ 40 0.039
VSF216 (VSF216Q) /CSM/VS/VSF2-A/VSF216Q.Seq.d/ 38 0.15
VSB141 (VSB141Q) /CSM/VS/VSB1-B/VSB141Q.Seq.d/ 38 0.15

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

DT712144|DT712144.1 s13dFA25G03SD024_503012 Tall fescue, Festuca arundinacea Schreb,young seedlings Festuca arundinacea cDNA, mRNA sequence. 58 3e-04 1
DT690405|DT690405.1 s13dFA75H06FM060_505320 Tall fescue, Festuca arundinacea Schreb, Floral meristem Festuca arundinacea cDNA, mRNA sequence. 58 3e-04 1
DT684731|DT684731.1 s13dFA10H12FS104_518610 Tall fescue, Festuca arundinacea Schreb, Field Stress Festuca arundinacea cDNA, mRNA sequence. 58 3e-04 1
DT684149|DT684149.1 s13dFA0CD11DS094_520736 Tall fescue, Festuca arundinacea Schreb, Drought Stress Festuca arundinacea cDNA, mRNA sequence. 58 3e-04 1
CJ845953|CJ845953.1 Triticum aestivum cDNA clone:whatlal39n16, 3' end. 58 3e-04 1
CJ787559|CJ787559.1 Triticum aestivum cDNA clone:whatl18a10, 3' end. 58 3e-04 1
CJ787558|CJ787558.1 Triticum aestivum cDNA clone:whatl18a09, 3' end. 58 3e-04 1
CK208782|CK208782.1 FGAS020501 Triticum aestivum FGAS: Library 5 GATE 7 Triticum aestivum cDNA, mRNA sequence. 58 3e-04 1
CK156776|CK156776.1 FGAS037798 Triticum aestivum FGAS: TaLt4 Triticum aestivum cDNA, mRNA sequence. 58 3e-04 1
CJ713691|CJ713691.1 Triticum aestivum cDNA clone whva19k18 5', Y.Ogihara unpublished cDNA library Wh_VABA, mRNA sequence. 58 3e-04 1
dna update 2007. 4.30
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54TJ4) RecName: Full=Probable ATP-dependent RNA helicase ddx27... 355 4e-97
AC147407_28(AC147407|pid:none) Medicago truncatula clone mth2-15... 112 1e-23
(Q0INC5) RecName: Full=DEAD-box ATP-dependent RNA helicase 28; ... 110 4e-23
BC088338_1(BC088338|pid:none) Rattus norvegicus DEAD (Asp-Glu-Al... 108 9e-23
BC011321_1(BC011321|pid:none) Mus musculus DEAD (Asp-Glu-Ala-Asp... 108 9e-23
(Q921N6) RecName: Full=Probable ATP-dependent RNA helicase DDX27... 108 9e-23
AY648729_1(AY648729|pid:none) Danio rerio DEAD box polypeptide 2... 107 3e-22
BC011927_1(BC011927|pid:none) Homo sapiens DEAD (Asp-Glu-Ala-Asp... 105 1e-21
EU718675_1(EU718675|pid:none) Homo sapiens DEAD box polypeptide ... 105 1e-21
AF336851_1(AF336851|pid:none) Homo sapiens RNA helicase-like pro... 105 1e-21
protein update 2009. 6.28
PSORT

psg: 0.69 gvh: 0.27 alm: 0.57 top: 0.53 tms: 0.00 mit: 0.37 mip: 0.05
nuc: 0.33 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: nuclear
16.0 %: mitochondrial
12.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for VHC552 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VHC552Z
3' end seq.
>VHC552Z.Seq
NNNNNNNNNNACCGTTATCAATTACAATATGCCAAATAATATGGCAAATTACATTCACAG
AGTTGGTCGTACTGCTCGTGCTGGTATGGATGGTAAATCTTGCTCTTTTATCACTGATAA
TGATCGTAAACTCTTAAAAGATATTGTTACAAAAGCAAGAAATAAAGCAAAATCAAGATC
TGTTTCACAAGATAATGTAAATTTCTGGAGAAATAGAATTGAAGAATTAACAGAAGATAT
TAAATCAATTGTTAGAGAAGAAATGAAAGAAGCAGATTTAAGAAAAGCAGAGAAAACATT
AGATAAAGCAGAGAAAATCATTTCGAATGCTGATGCAAATGTTGAAACACCAAAAGTTTG
GTATAAAACAAAACAAGAAGAAGATAAATCAAAAGAGTTATGGAAGATTGAAAATAACAT
TGTTAATCCAGGTAAAAAATTAAAGGCACCAATCGATGTTACCGGTGTAAATAATGTACC
ATCAATTAAAAAATTAAAACAAAAGAAAGATCCATACTATGGTTTATCTAGAAAACAAAG
AAGACATAGACAATTTAAAGAAGAGTTTGAACGTGAACAACAAGAGGAGAGAAAGAGAAA
AGGTGGTGACGATGGTGA
Length of 3' end seq. 618
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -