AFN560
Library AF
(Link to library)
Clone ID AFN560
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10734-1
Original site URL
Representative seq. ID AFN560Z
(Link to Original site)
Representative DNA sequence
>AFN560 (AFN560Q) /CSM/AF/AFN5-C/AFN560Q.Seq.d/
XXXXXXXXXXCGAAGATGTAAAGAAAATCGCTACCTCACAAAAAGGTAATGCCGTTTTCT
GTTGGGTCGATATGAAGAAATTCCCACAACAAGCAACTCATATGGGTCTCTCTGGTAAAG
TTGTTCCAGCCATCTCTGTTGATTCAGTTGCCAATAAAGCTCGTTACAATTTCGATGAAA
AAGAAACCTTCTCATTCGATACCGTCTCCAAATGGATCCAAGATGTCATTGGTGGTAAAG
TTTCTCCATTTGTTAAATCTCAACCAGAACCAGAATCAAATGATGCTCCAGTTAAGGTTG
CCGTTGGTACCACTTTCAAAAAGTTGGTTTTAGACTCACCAAAGGATGTTTTGGTTGAAT
TCTACGCTCCATGGTGCGGTCATTGCAAGAATCTTGCTCCAATCTACGATAAATTAGGTG
AATACTTAAAAGACGTTGAATCTGTCTCAATCGTAAAGATTGATGCCGACTCAAATGATG
TACCAAGTGATATCGAAATTAGAGGTTACCCAACCATCATGCTCTTCAAAGCTGATGACA
AAGAAAATCCAATCTCTTATGAAGGTCAAAGAAATGATCATATGAACTTTGTTGAATTCA
TTCAAGATAACGCTGCCATTGAATTCNAATTACCATCATCTCAAACTGATGATAATGTGA
ATCTAAAAAAGATTCTTCTGCTCAACAT
sequence update 2001. 6. 1
Translated Amino Acid sequence
---EDVKKIATSQKGNAVFCWVDMKKFPQQATHMGLSGKVVPAISVDSVANKARYNFDEK
ETFSFDTVSKWIQDVIGGKVSPFVKSQPEPESNDAPVKVAVGTTFKKLVLDSPKDVLVEF
YAPWCGHCKNLAPIYDKLGEYLKDVESVSIVKIDADSNDVPSDIEIRGYPTIMLFKADDK
ENPISYEGQRNDHMNFVEFIQDNAAIEFXLPSSQTDDNVNLKKILLLN


Translated Amino Acid sequence (All Frames)
Frame A:
---EDVKKIATSQKGNAVFCWVDMKKFPQQATHMGLSGKVVPAISVDSVANKARYNFDEK
ETFSFDTVSKWIQDVIGGKVSPFVKSQPEPESNDAPVKVAVGTTFKKLVLDSPKDVLVEF
YAPWCGHCKNLAPIYDKLGEYLKDVESVSIVKIDADSNDVPSDIEIRGYPTIMLFKADDK
ENPISYEGQRNDHMNFVEFIQDNAAIEFXLPSSQTDDNVNLKKILLLN


Frame B:
---km*rkslphkkvmpfsvgsi*rnshnkqliwvslvklfqpslliqlpiklvtismkk
kpshsipspngskmslvvkflhllnlnqnqnqmmlqlrlplvplskswf*thqrmfwlns
tlhgaviarillqstin*vnt*ktlnlsqs*rlmptqmmyqvisklevtqpscssklmtk
kiqslmkvkemii*tllnsfkitlplnsnyhhlklmim*i*krffcst


Frame C:
---rckenryltkr*crfllgryeeipttsnsygslw*scsshlc*fscq*sslqfr*kr
nlliryrlqmdprchww*sfsic*istrtrik*css*gcrwyhfqkvgfrltkgcfg*il
rsmvrslqescsnlr*ir*ilkrr*iclnrkd*crlk*ctk*yrn*rlpnhhalqs**qr
ksnll*rskk*syelc*ihsr*rch*ixitiisn***ceskkdssaqh


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFN560 (AFN560Q) /CSM/AF/AFN5-C/AFN560Q.Seq.d/ 1338 0.0
SFK855 (SFK855Q) /CSM/SF/SFK8-C/SFK855Q.Seq.d/ 1330 0.0
AFN855 (AFN855Q) /CSM/AF/AFN8-C/AFN855Q.Seq.d/ 1330 0.0
AFO686 (AFO686Q) /CSM/AF/AFO6-D/AFO686Q.Seq.d/ 1328 0.0
AFN679 (AFN679Q) /CSM/AF/AFN6-D/AFN679Q.Seq.d/ 1328 0.0
AFN674 (AFN674Q) /CSM/AF/AFN6-D/AFN674Q.Seq.d/ 1328 0.0
AFN461 (AFN461Q) /CSM/AF/AFN4-C/AFN461Q.Seq.d/ 1328 0.0
AFN128 (AFN128Q) /CSM/AF/AFN1-B/AFN128Q.Seq.d/ 1328 0.0
AFM768 (AFM768Q) /CSM/AF/AFM7-C/AFM768Q.Seq.d/ 1328 0.0
AFM464 (AFM464Q) /CSM/AF/AFM4-C/AFM464Q.Seq.d/ 1328 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BJ171852|BJ171852.1 Physcomitrella patens subsp. patens cDNA clone:pph30f12, 3' end,single read. 599 e-167 1
CN206669|CN206669.1 Tor7097 Gametophyte rehydration Library Tortula ruralis cDNA, mRNA sequence. 78 2e-10 1
CN591465|CN591465.1 TTE00010235 Normalized large Tetrahymena thermophila cDNA, mRNA sequence. 74 3e-09 1
BM398179|BM398179.1 5009-0-41-G11.t.1 Chilcoat/Turkewitz cDNA (large fraction) Tetrahymena thermophila cDNA, mRNA sequence. 74 3e-09 1
CN597971|CN597971.1 TTE00009997 Normalized large Tetrahymena thermophila cDNA, mRNA sequence. 74 3e-09 1
CN590755|CN590755.1 TTE00006978 Normalized large Tetrahymena thermophila cDNA, mRNA sequence. 74 3e-09 1
CB176061|CB176061.1 pl17e07.y3 Ancylostoma ceylanicum adult Ancylostoma ceylanicum cDNA 5' similar to TR:O17908 O17908 H06O01.1 PROTEIN. [1] ;, mRNA sequence. 70 5e-08 1
CN206834|CN206834.1 Tor7258 Gametophyte rehydration Library Tortula ruralis cDNA, mRNA sequence. 70 5e-08 1
CK030146|CK030146.1 AGENCOURT_16621384 NIH_ZGC_7 Danio rerio cDNA clone IMAGE:7052631 5', mRNA sequence. 70 5e-08 1
AL924030|AL924030.1 Danio rerio EST sequence, clone 134-B07-2. 70 5e-08 1
dna update 2004. 8.15
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q12730) RecName: Full=Protein disulfide-isomerase; Sho... 173 5e-42
EU016183_1(EU016183|pid:none) Haemaphysalis longicornis strain G... 171 2e-41
(Q00248) RecName: Full=Protein disulfide-isomerase; Sho... 169 9e-41
DQ066336_1(DQ066336|pid:none) Ixodes scapularis isolate IS-6-12-... 166 6e-40
CU633901_146(CU633901|pid:none) Podospora anserina genomic DNA c... 162 8e-39
DQ377176_1(DQ377176|pid:none) Amblyomma variegatum protein disul... 161 2e-38
AE013599_1413(AE013599|pid:none) Drosophila melanogaster chromos... 152 7e-36
AK290971_1(AK290971|pid:none) Homo sapiens cDNA FLJ78033 complet... 150 2e-35
BC046707_1(BC046707|pid:none) Xenopus laevis glucose regulated p... 150 2e-35
(P13667) RecName: Full=Protein disulfide-isomerase A4; ... 150 2e-35
protein update 2009. 4.25
PSORT

psg: 0.86 gvh: 0.36 alm: 0.43 top: 0.60 tms: 0.00 mit: 0.14 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
40.0 %: nuclear
8.0 %: cytoskeletal
8.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for AFN560 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFN560Z
3' end seq.
>AFN560Z.Seq
----------CGAAGATGTAAAGAAAATCGCTACCTCACAAAAAGGTAATGCCGTTTTCT
GTTGGGTCGATATGAAGAAATTCCCACAACAAGCAACTCATATGGGTCTCTCTGGTAAAG
TTGTTCCAGCCATCTCTGTTGATTCAGTTGCCAATAAAGCTCGTTACAATTTCGATGAAA
AAGAAACCTTCTCATTCGATACCGTCTCCAAATGGATCCAAGATGTCATTGGTGGTAAAG
TTTCTCCATTTGTTAAATCTCAACCAGAACCAGAATCAAATGATGCTCCAGTTAAGGTTG
CCGTTGGTACCACTTTCAAAAAGTTGGTTTTAGACTCACCAAAGGATGTTTTGGTTGAAT
TCTACGCTCCATGGTGCGGTCATTGCAAGAATCTTGCTCCAATCTACGATAAATTAGGTG
AATACTTAAAAGACGTTGAATCTGTCTCAATCGTAAAGATTGATGCCGACTCAAATGATG
TACCAAGTGATATCGAAATTAGAGGTTACCCAACCATCATGCTCTTCAAAGCTGATGACA
AAGAAAATCCAATCTCTTATGAAGGTCAAAGAAATGATCATATGAACTTTGTTGAATTCA
TTCAAGATAACGCTGCCATTGAATTCNAATTACCATCATCTCAAACTGATGATAATGTGA
ATCTAAAAAAGATTCTTCTGCTCAACAT
Length of 3' end seq. 678
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -